Guide to the Human Genome
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Name: GUCA1B Sequence: fasta or formatted (200aa) NCBI GI: 153945858
Description:

guanylate cyclase activator 1B (retina)

Referenced in:

Cyclic Nucleotides
Photoreceptors and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         12           2
 C cysteine            1.5          3           1
 D aspartate           7.0         14           2
 E glutamate          11.5         23           2
 F phenylalanine       6.5         13           2
 G glycine             6.5         13           1
 H histidine           1.0          2           1
 I isoleucine          3.5          7           1
 K lysine              7.0         14           2
 L leucine            10.5         21           2
 M methionine          4.5          9           1
 N asparagine          4.0          8           1
 P proline             1.5          3           1
 Q glutamine           5.5         11           2
 R arginine            5.5         11           2
 S serine              3.5          7           2
 T threonine           3.5          7           1
 V valine              6.0         12           2
 W tryptophan          2.5          5           1
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanylate cyclase activator 1B (retina) 
GUCA1A                0.374   guanylate cyclase activator 1A (retina) 
HPCAL1                0.343   hippocalcin-like 1 
HPCAL1                0.343   hippocalcin-like 1 
NCALD                 0.338   neurocalcin delta 
NCALD                 0.338   neurocalcin delta 
NCALD                 0.338   neurocalcin delta 
NCALD                 0.338   neurocalcin delta 
NCALD                 0.338   neurocalcin delta 
NCALD                 0.338   neurocalcin delta 
NCALD                 0.338   neurocalcin delta 
NCALD                 0.338   neurocalcin delta 
VSNL1                 0.327   visinin-like 1 
HPCA                  0.327   hippocalcin 
HPCAL4                0.322   hippocalcin-like protein 4 
FREQ                  0.288   frequenin homolog isoform 2 
FREQ                  0.288   frequenin homolog isoform 1 
GUCA1C                0.270   guanylate cyclase activator 1C 
RCVRN                 0.239   recoverin 
KCNIP1                0.229   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.229   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.229   Kv channel interacting protein 1 isoform 2 
KCNIP2                0.229   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.229   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.229   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.229   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.229   Kv channel interacting protein 2 isoform 2 
KCNIP4                0.216   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.216   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.216   Kv channel interacting protein 4 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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