Guide to the Human Genome
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Name: S100A13 Sequence: fasta or formatted (98aa) NCBI GI: 66737368
Description:

S100 calcium binding protein A13

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt mRNA [98aa] S100 calcium binding protein A13
alt mRNA [98aa] S100 calcium binding protein A13
alt mRNA [98aa] S100 calcium binding protein A13
alt mRNA [98aa] S100 calcium binding protein A13
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          4           2
 C cysteine            0.0          0           0
 D aspartate           6.1          6           1
 E glutamate          13.3         13           2
 F phenylalanine       5.1          5           2
 G glycine             3.1          3           1
 H histidine           1.0          1           1
 I isoleucine          4.1          4           1
 K lysine             13.3         13           3
 L leucine            13.3         13           2
 M methionine          2.0          2           1
 N asparagine          3.1          3           1
 P proline             2.0          2           1
 Q glutamine           4.1          4           2
 R arginine            5.1          5           1
 S serine              6.1          6           1
 T threonine           6.1          6           2
 V valine              6.1          6           2
 W tryptophan          1.0          1           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein A13 
S100A13               1.000   S100 calcium binding protein A13 
S100A13               1.000   S100 calcium binding protein A13 
S100A13               1.000   S100 calcium binding protein A13 
S100A13               1.000   S100 calcium binding protein A13 
S100A14               0.299   S100 calcium binding protein A14 
S100A16               0.210   S100 calcium binding protein A16 
S100A5                0.204   S100 calcium binding protein A5 
S100A1                0.198   S100 calcium binding protein A1 
S100A9                0.192   S100 calcium-binding protein A9 
S100A12               0.192   S100 calcium-binding protein A12 
S100A11               0.186   S100 calcium binding protein A11 
S100A4                0.180   S100 calcium-binding protein A4 
S100A4                0.180   S100 calcium-binding protein A4 
S100A2                0.162   S100 calcium binding protein A2 
S100G                 0.150   calbindin 3 
FLG2                  0.150   filaggrin family member 2 
S100P                 0.150   S100 calcium binding protein P 
S100B                 0.144   S100 calcium-binding protein, beta 
S100A6                0.132   S100 calcium-binding protein A6 
S100Z                 0.132   S100 calcium binding protein Z 
HRNR                  0.132   hornerin 
FLG                   0.114   filaggrin 
S100A8                0.108   S100 calcium-binding protein A8 
CRNN                  0.084   cornulin 
S100A3                0.072   S100 calcium binding protein A3 
S100A7                0.060   S100 calcium binding protein A7 
S100A7A               0.048   S100 calcium binding protein A7-like 1 
GOLGA4                0.036   golgi autoantigen, golgin subfamily a, 4 
MYH9                  0.030   myosin, heavy polypeptide 9, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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