Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC729595 Sequence: fasta or formatted (204aa) NCBI GI: 169168462
Description:

PREDICTED: similar to high mobility group box 3

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [201aa] PREDICTED: similar to high mobility group box 3 isoform 1
alt mRNA [204aa] PREDICTED: similar to high mobility group box 3
alt prot [183aa] PREDICTED: similar to high mobility group box 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         11           1
 C cysteine            2.0          4           1
 D aspartate           5.9         12           1
 E glutamate           9.3         19           3
 F phenylalanine       4.4          9           2
 G glycine             6.4         13           2
 H histidine           0.5          1           1
 I isoleucine          2.5          5           1
 K lysine             22.1         45           4
 L leucine             2.5          5           1
 M methionine          3.9          8           1
 N asparagine          3.9          8           2
 P proline             5.9         12           2
 Q glutamine           1.5          3           1
 R arginine            4.4          9           3
 S serine              8.3         17           2
 T threonine           2.9          6           1
 V valine              4.9         10           1
 W tryptophan          1.5          3           1
 Y tyrosine            2.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to high mobility group box 3 [Ho... 
LOC729595             1.000   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.985   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.793   PREDICTED: similar to high mobility group box 3 iso...
HMGB3                 0.788   high-mobility group box 3 
LOC441795             0.710   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.710   PREDICTED: high mobility group protein B3-like prot...
LOC646993             0.702   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.702   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.702   PREDICTED: similar to high mobility group box 3 [Ho...
LOC203510             0.662   PREDICTED: similar to hCG1644442 
LOC203510             0.662   PREDICTED: similar to hCG1644442 
LOC203510             0.662   PREDICTED: hypothetical protein LOC203510 
HMGB2                 0.573   high-mobility group box 2 
HMGB2                 0.573   high-mobility group box 2 
HMGB2                 0.573   high-mobility group box 2 
HMGB1                 0.571   high-mobility group box 1 
HMGB1L1               0.545   high-mobility group box 1-like 1 
LOC645490             0.409   PREDICTED: similar to hCG1991922 
LOC645490             0.409   PREDICTED: similar to hCG1991922 
LOC645490             0.409   PREDICTED: similar to hCG1991922 
SP100                 0.404   nuclear antigen Sp100 isoform 2 
HMGB4                 0.245   HMG2 like isoform 1 
LOC644129             0.237   PREDICTED: similar to hCG1647425 
LOC644129             0.237   PREDICTED: similar to hCG1647425 
LOC644129             0.217   PREDICTED: similar to hCG1647425 
SSRP1                 0.144   structure specific recognition protein 1 
TOX4                  0.116   epidermal Langerhans cell protein LCP1 
TOX                   0.114   thymus high mobility group box protein TOX 
TOX2                  0.114   TOX high mobility group box family member 2 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press