Guide to the Human Genome
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Name: KCNH8 Sequence: fasta or formatted (1107aa) NCBI GI: 27886667
Description:

potassium voltage-gated channel, subfamily H, member 8

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         59           2
 C cysteine            2.0         22           1
 D aspartate           4.7         52           2
 E glutamate           6.4         71           6
 F phenylalanine       4.3         48           1
 G glycine             5.2         58           2
 H histidine           2.7         30           2
 I isoleucine          6.1         68           2
 K lysine              6.1         67           2
 L leucine            11.4        126           2
 M methionine          1.7         19           1
 N asparagine          4.6         51           3
 P proline             4.2         46           2
 Q glutamine           4.1         45           2
 R arginine            4.3         48           3
 S serine             10.9        121           3
 T threonine           5.9         65           2
 V valine              6.2         69           2
 W tryptophan          1.2         13           1
 Y tyrosine            2.6         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, subfamily H, member... 
KCNH4                 0.473   potassium voltage-gated channel, subfamily H, member ...
KCNH3                 0.424   potassium voltage-gated channel, subfamily H (eag-re...
KCNH6                 0.263   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.233   potassium voltage-gated channel, subfamily H, member ...
KCNH5                 0.230   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.228   potassium voltage-gated channel, subfamily H, member...
KCNH7                 0.218   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.209   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.208   voltage-gated potassium channel, subfamily H, member ...
KCNH2                 0.207   voltage-gated potassium channel, subfamily H, member...
KCNH6                 0.207   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.203   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.184   voltage-gated potassium channel, subfamily H, member...
KCNH7                 0.149   potassium voltage-gated channel, subfamily H, member...
HCN2                  0.062   hyperpolarization activated cyclic nucleotide-gated...
HCN4                  0.062   hyperpolarization activated cyclic nucleotide-gated p...
HCN1                  0.061   hyperpolarization activated cyclic nucleotide-gated...
CNGA1                 0.059   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.059   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CNGA3                 0.059   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.058   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
HCN3                  0.054   hyperpolarization activated cyclic nucleotide-gated ...
CNGA2                 0.053   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.050   cyclic nucleotide gated channel alpha 4 
CNGB1                 0.033   cyclic nucleotide gated channel beta 1 isoform a [H...
CNGB3                 0.031   cyclic nucleotide gated channel beta 3 
KCNK17                0.009   potassium channel, subfamily K, member 17 isoform 2...
KCNK17                0.009   potassium channel, subfamily K, member 17 isoform 1 ...
KCND1                 0.007   potassium voltage-gated channel, Shal-related subfam...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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