Guide to the Human Genome
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Name: KCNH6 Sequence: fasta or formatted (994aa) NCBI GI: 13540549
Description:

potassium voltage-gated channel, subfamily H, member 6 isoform 1

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [905aa] potassium voltage-gated channel, subfamily H, member 6 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         72           2
 C cysteine            2.3         23           1
 D aspartate           4.9         49           2
 E glutamate           4.5         45           2
 F phenylalanine       4.6         46           2
 G glycine             7.0         70           2
 H histidine           3.2         32           1
 I isoleucine          5.0         50           2
 K lysine              3.4         34           1
 L leucine            11.6        115           3
 M methionine          1.7         17           1
 N asparagine          2.9         29           1
 P proline             7.2         72           2
 Q glutamine           4.8         48           2
 R arginine            5.3         53           2
 S serine              9.0         89           3
 T threonine           4.5         45           3
 V valine              6.1         61           3
 W tryptophan          1.3         13           1
 Y tyrosine            3.1         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, subfamily H, member... 
KCNH6                 0.877   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.459   voltage-gated potassium channel, subfamily H, member ...
KCNH7                 0.446   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.433   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.389   voltage-gated potassium channel, subfamily H, member...
KCNH7                 0.324   potassium voltage-gated channel, subfamily H, member...
KCNH8                 0.286   potassium voltage-gated channel, subfamily H, member...
KCNH4                 0.284   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.264   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.259   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.256   potassium voltage-gated channel, subfamily H, member...
KCNH3                 0.255   potassium voltage-gated channel, subfamily H (eag-re...
KCNH5                 0.228   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.226   potassium voltage-gated channel, subfamily H, member...
HCN4                  0.080   hyperpolarization activated cyclic nucleotide-gated p...
HCN2                  0.077   hyperpolarization activated cyclic nucleotide-gated...
HCN1                  0.076   hyperpolarization activated cyclic nucleotide-gated...
HCN3                  0.074   hyperpolarization activated cyclic nucleotide-gated ...
CNGA3                 0.068   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.068   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA1                 0.066   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.066   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CNGA2                 0.062   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.056   cyclic nucleotide gated channel alpha 4 
CNGB1                 0.034   cyclic nucleotide gated channel beta 1 isoform a [H...
CNGB3                 0.032   cyclic nucleotide gated channel beta 3 
KCNK17                0.009   potassium channel, subfamily K, member 17 isoform 2...
KCNK17                0.009   potassium channel, subfamily K, member 17 isoform 1 ...
PRKG1                 0.007   protein kinase, cGMP-dependent, type I isoform 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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