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Name: CNGA1 Sequence: fasta or formatted (690aa) NCBI GI: 71143141
Description:

cyclic nucleotide gated channel alpha 1 isoform 2

Referenced in:

Calcium and TRP Cation Channels
Photoreceptors and Related Functions

Other entries for this name:
alt prot [759aa] cyclic nucleotide gated channel alpha 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         31           2
 C cysteine            1.0          7           1
 D aspartate           6.7         46           3
 E glutamate           8.1         56           3
 F phenylalanine       4.3         30           2
 G glycine             4.9         34           2
 H histidine           0.6          4           1
 I isoleucine          7.4         51           3
 K lysine             10.6         73           6
 L leucine             9.3         64           2
 M methionine          2.8         19           1
 N asparagine          5.5         38           2
 P proline             3.6         25           3
 Q glutamine           2.8         19           2
 R arginine            4.5         31           2
 S serine              7.0         48           2
 T threonine           4.5         31           2
 V valine              6.2         43           3
 W tryptophan          1.3          9           1
 Y tyrosine            4.5         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclic nucleotide gated channel alpha 1 isoform 2 [H... 
CNGA1                 1.000   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA3                 0.608   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA3                 0.608   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA2                 0.566   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.422   cyclic nucleotide gated channel alpha 4 
CNGB1                 0.213   cyclic nucleotide gated channel beta 1 isoform a [H...
CNGB3                 0.205   cyclic nucleotide gated channel beta 3 
HCN1                  0.113   hyperpolarization activated cyclic nucleotide-gated...
HCN4                  0.111   hyperpolarization activated cyclic nucleotide-gated p...
HCN2                  0.104   hyperpolarization activated cyclic nucleotide-gated...
HCN3                  0.102   hyperpolarization activated cyclic nucleotide-gated ...
KCNH7                 0.101   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.098   potassium voltage-gated channel, subfamily H, member...
KCNH8                 0.095   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.091   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.091   voltage-gated potassium channel, subfamily H, member ...
KCNH4                 0.089   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.089   potassium voltage-gated channel, subfamily H, member ...
KCNH5                 0.088   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.086   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.084   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.083   potassium voltage-gated channel, subfamily H, member...
KCNH3                 0.083   potassium voltage-gated channel, subfamily H (eag-re...
KCNH2                 0.078   voltage-gated potassium channel, subfamily H, member...
KCNH5                 0.075   potassium voltage-gated channel, subfamily H, member...
KCNH7                 0.058   potassium voltage-gated channel, subfamily H, member...
LOC100294364          0.026   PREDICTED: hypothetical protein 
LOC100294088          0.025   PREDICTED: hypothetical protein, partial 
UPF2                  0.024   UPF2 regulator of nonsense transcripts homolog [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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