Guide to the Human Genome
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Name: CNGB3 Sequence: fasta or formatted (809aa) NCBI GI: 116642889
Description:

cyclic nucleotide gated channel beta 3

Referenced in:

Calcium and TRP Cation Channels
Photoreceptors and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         47           2
 C cysteine            1.2         10           2
 D aspartate           5.1         41           2
 E glutamate           8.2         66           3
 F phenylalanine       3.7         30           2
 G glycine             5.7         46           3
 H histidine           1.6         13           2
 I isoleucine          5.6         45           2
 K lysine              8.8         71           3
 L leucine            10.1         82           3
 M methionine          2.1         17           1
 N asparagine          4.9         40           2
 P proline             5.7         46           2
 Q glutamine           4.1         33           2
 R arginine            4.8         39           2
 S serine              5.6         45           2
 T threonine           6.3         51           2
 V valine              5.4         44           2
 W tryptophan          1.1          9           1
 Y tyrosine            4.2         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclic nucleotide gated channel beta 3 
CNGB1                 0.435   cyclic nucleotide gated channel beta 1 isoform a [H...
CNGA3                 0.176   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA3                 0.176   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA1                 0.173   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.173   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CNGA2                 0.172   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.137   cyclic nucleotide gated channel alpha 4 
HCN4                  0.071   hyperpolarization activated cyclic nucleotide-gated p...
HCN3                  0.068   hyperpolarization activated cyclic nucleotide-gated ...
HCN2                  0.068   hyperpolarization activated cyclic nucleotide-gated...
HCN1                  0.067   hyperpolarization activated cyclic nucleotide-gated...
KCNH1                 0.055   potassium voltage-gated channel, subfamily H, member ...
KCNH5                 0.051   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.051   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.048   potassium voltage-gated channel, subfamily H, member...
KCNH7                 0.048   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.047   voltage-gated potassium channel, subfamily H, member ...
KCNH5                 0.046   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.044   voltage-gated potassium channel, subfamily H, member...
KCNH8                 0.042   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.040   voltage-gated potassium channel, subfamily H, member...
KCNH6                 0.040   potassium voltage-gated channel, subfamily H, member...
KCNH4                 0.039   potassium voltage-gated channel, subfamily H, member ...
KCNH3                 0.034   potassium voltage-gated channel, subfamily H (eag-re...
KCNH6                 0.034   potassium voltage-gated channel, subfamily H, member...
TAF3                  0.021   RNA polymerase II transcription factor TAFII140 [Ho...
RGAG4                 0.019   retrotransposon gag domain containing 4 
PRKG2                 0.015   protein kinase, cGMP-dependent, type II 
CHAF1A                0.014   chromatin assembly factor 1, subunit A (p150) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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