Guide to the Human Genome
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Name: KCNH2 Sequence: fasta or formatted (1159aa) NCBI GI: 4557729
Description:

voltage-gated potassium channel, subfamily H, member 2 isoform a

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [888aa] voltage-gated potassium channel, subfamily H, member 2 isoform b
alt prot [819aa] voltage-gated potassium channel, subfamily H, member 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         93           3
 C cysteine            2.1         24           1
 D aspartate           4.7         55           2
 E glutamate           5.2         60           2
 F phenylalanine       4.0         46           1
 G glycine             8.0         93           2
 H histidine           2.4         28           1
 I isoleucine          4.8         56           2
 K lysine              3.0         35           1
 L leucine            10.9        126           3
 M methionine          2.1         24           1
 N asparagine          3.0         35           1
 P proline             8.3         96           4
 Q glutamine           2.9         34           1
 R arginine            7.3         85           3
 S serine              8.9        103           3
 T threonine           5.1         59           2
 V valine              5.8         67           3
 W tryptophan          1.0         12           1
 Y tyrosine            2.4         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-gated potassium channel, subfamily H, member ... 
KCNH2                 0.683   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.678   voltage-gated potassium channel, subfamily H, member...
KCNH7                 0.521   potassium voltage-gated channel, subfamily H, member...
KCNH7                 0.390   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.388   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.340   potassium voltage-gated channel, subfamily H, member...
KCNH4                 0.195   potassium voltage-gated channel, subfamily H, member ...
KCNH8                 0.195   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.192   potassium voltage-gated channel, subfamily H, member ...
KCNH5                 0.189   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.189   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.188   potassium voltage-gated channel, subfamily H, member...
KCNH3                 0.182   potassium voltage-gated channel, subfamily H (eag-re...
KCNH5                 0.165   potassium voltage-gated channel, subfamily H, member...
HCN1                  0.065   hyperpolarization activated cyclic nucleotide-gated...
HCN4                  0.064   hyperpolarization activated cyclic nucleotide-gated p...
HCN2                  0.064   hyperpolarization activated cyclic nucleotide-gated...
HCN3                  0.063   hyperpolarization activated cyclic nucleotide-gated ...
CNGA3                 0.057   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.057   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA1                 0.053   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.053   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CNGA2                 0.050   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.047   cyclic nucleotide gated channel alpha 4 
CNGB3                 0.032   cyclic nucleotide gated channel beta 3 
CNGB1                 0.031   cyclic nucleotide gated channel beta 1 isoform a [H...
WNK4                  0.010   WNK lysine deficient protein kinase 4 
HSF1                  0.009   heat shock transcription factor 1 
MAGEC1                0.008   melanoma antigen family C, 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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