Guide to the Human Genome
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Name: KCND1 Sequence: fasta or formatted (647aa) NCBI GI: 27436981
Description:

potassium voltage-gated channel, Shal-related subfamily, member 1

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         59           3
 C cysteine            2.8         18           2
 D aspartate           4.2         27           2
 E glutamate           5.4         35           2
 F phenylalanine       6.0         39           2
 G glycine             7.1         46           4
 H histidine           1.9         12           3
 I isoleucine          4.2         27           3
 K lysine              2.9         19           2
 L leucine             9.9         64           2
 M methionine          1.5         10           1
 N asparagine          2.9         19           1
 P proline             5.7         37           2
 Q glutamine           3.4         22           2
 R arginine            8.2         53           2
 S serine              9.4         61           2
 T threonine           5.7         37           2
 V valine              6.2         40           2
 W tryptophan          0.8          5           1
 Y tyrosine            2.6         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, Shal-related subfam... 
KCND2                 0.630   potassium voltage-gated channel, Shal-related subfami...
KCND3                 0.620   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.611   potassium voltage-gated channel, Shal-related subfam...
KCNB1                 0.199   potassium voltage-gated channel, Shab-related subfami...
KCNB2                 0.199   potassium voltage-gated channel, Shab-related subfam...
KCNA3                 0.199   potassium voltage-gated channel, shaker-related subf...
KCNA2                 0.196   potassium voltage-gated channel, shaker-related subfa...
KCNA7                 0.195   potassium voltage-gated channel, shaker-related subf...
KCNA1                 0.192   potassium voltage-gated channel subfamily A member ...
KCNA10                0.192   potassium voltage-gated channel, shaker-related subfa...
KCNC1                 0.190   Shaw-related voltage-gated potassium channel protein ...
KCNC1                 0.190   Shaw-related voltage-gated potassium channel protei...
KCNA4                 0.189   potassium voltage-gated channel, shaker-related subfa...
KCNA5                 0.188   potassium voltage-gated channel, shaker-related subf...
KCNC4                 0.188   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.188   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.188   Shaw-related voltage-gated potassium channel protein...
KCNC3                 0.185   Shaw-related voltage-gated potassium channel protein...
KCNA6                 0.181   potassium voltage-gated channel, shaker-related subfa...
KCNC2                 0.177   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.177   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.177   Shaw-related voltage-gated potassium channel protein...
KCNV1                 0.177   potassium channel, subfamily V, member 1 
KCNS3                 0.168   potassium voltage-gated channel delayed-rectifier pr...
KCNG1                 0.166   potassium voltage-gated channel, subfamily G, member...
KCNG2                 0.165   potassium voltage-gated channel, subfamily G, member ...
KCNF1                 0.163   potassium voltage-gated channel, subfamily F, member...
KCNS1                 0.158   potassium voltage-gated channel delayed-rectifier pr...
KCNS2                 0.151   potassium voltage-gated channel, delayed-rectifier, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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