Guide to the Human Genome
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Name: KCNK17 Sequence: fasta or formatted (332aa) NCBI GI: 17025230
Description:

potassium channel, subfamily K, member 17 isoform 1

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [271aa] potassium channel, subfamily K, member 17 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         25           2
 C cysteine            2.4          8           2
 D aspartate           3.3         11           1
 E glutamate           3.6         12           1
 F phenylalanine       5.1         17           3
 G glycine             9.3         31           2
 H histidine           2.4          8           2
 I isoleucine          3.9         13           2
 K lysine              2.4          8           1
 L leucine            13.9         46           4
 M methionine          2.7          9           1
 N asparagine          3.0         10           1
 P proline             5.4         18           2
 Q glutamine           4.2         14           2
 R arginine            5.7         19           1
 S serine              9.0         30           2
 T threonine           4.5         15           2
 V valine              4.8         16           2
 W tryptophan          3.3         11           1
 Y tyrosine            3.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel, subfamily K, member 17 isoform 1 ... 
KCNK17                0.664   potassium channel, subfamily K, member 17 isoform 2...
KCNK16                0.306   potassium channel, subfamily K, member 16 isoform 3...
KCNK16                0.306   potassium channel, subfamily K, member 16 isoform 2 ...
KCNK16                0.255   potassium channel, subfamily K, member 16 isoform 4...
KCNK16                0.255   potassium channel, subfamily K, member 16 isoform 1...
KCNK5                 0.230   potassium channel, subfamily K, member 5 
KCNK4                 0.214   TRAAK 
KCNK10                0.193   potassium channel, subfamily K, member 10 isoform 3 ...
KCNK10                0.193   potassium channel, subfamily K, member 10 isoform 2 ...
KCNK10                0.193   potassium channel, subfamily K, member 10 isoform 1 ...
KCNK2                 0.188   potassium channel, subfamily K, member 2 isoform b [...
KCNK2                 0.188   potassium channel, subfamily K, member 2 isoform c ...
KCNK2                 0.188   potassium channel, subfamily K, member 2 isoform a [...
KCNK6                 0.167   potassium channel, subfamily K, member 6 
KCNK1                 0.143   potassium channel, subfamily K, member 1 
KCNK15                0.137   potassium family, subfamily K, member 15 
KCNK3                 0.131   potassium channel, subfamily K, member 3 
KCNK9                 0.120   potassium channel, subfamily K, member 9 
KCNK7                 0.108   potassium channel, subfamily K, member 7 isoform A [...
KCNK7                 0.105   potassium channel, subfamily K, member 7 isoform B [...
KCNK7                 0.105   potassium channel, subfamily K, member 7 isoform B [...
KCNK7                 0.104   potassium channel, subfamily K, member 7 isoform C [H...
KCNK13                0.089   potassium channel, subfamily K, member 13 
KCNK12                0.087   potassium channel, subfamily K, member 12 
KCNK18                0.036   potassium channel, subfamily K, member 18 
KCNH8                 0.030   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.030   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.030   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.030   potassium voltage-gated channel, subfamily H, member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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