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Name: CNGA1 Sequence: fasta or formatted (759aa) NCBI GI: 217035093
Description:

cyclic nucleotide gated channel alpha 1 isoform 1

Referenced in:

Calcium and TRP Cation Channels
Photoreceptors and Related Functions

Other entries for this name:
alt prot [690aa] cyclic nucleotide gated channel alpha 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         36           2
 C cysteine            1.2          9           1
 D aspartate           6.6         50           3
 E glutamate           7.9         60           3
 F phenylalanine       4.5         34           2
 G glycine             5.1         39           2
 H histidine           1.1          8           2
 I isoleucine          7.2         55           3
 K lysine              9.6         73           6
 L leucine             9.6         73           2
 M methionine          2.8         21           1
 N asparagine          5.0         38           2
 P proline             3.7         28           3
 Q glutamine           2.9         22           2
 R arginine            4.3         33           2
 S serine              8.0         61           2
 T threonine           4.3         33           2
 V valine              6.1         46           3
 W tryptophan          1.2          9           1
 Y tyrosine            4.1         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclic nucleotide gated channel alpha 1 isoform 1 [... 
CNGA1                 0.909   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CNGA3                 0.553   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA3                 0.552   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA2                 0.515   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.384   cyclic nucleotide gated channel alpha 4 
CNGB1                 0.194   cyclic nucleotide gated channel beta 1 isoform a [H...
CNGB3                 0.187   cyclic nucleotide gated channel beta 3 
HCN1                  0.103   hyperpolarization activated cyclic nucleotide-gated...
HCN4                  0.101   hyperpolarization activated cyclic nucleotide-gated p...
HCN2                  0.095   hyperpolarization activated cyclic nucleotide-gated...
HCN3                  0.093   hyperpolarization activated cyclic nucleotide-gated ...
KCNH7                 0.092   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.089   potassium voltage-gated channel, subfamily H, member...
KCNH8                 0.087   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.083   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.083   voltage-gated potassium channel, subfamily H, member ...
KCNH4                 0.081   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.081   potassium voltage-gated channel, subfamily H, member ...
KCNH5                 0.080   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.079   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.077   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.075   potassium voltage-gated channel, subfamily H, member...
KCNH3                 0.075   potassium voltage-gated channel, subfamily H (eag-re...
KCNH2                 0.071   voltage-gated potassium channel, subfamily H, member...
KCNH5                 0.069   potassium voltage-gated channel, subfamily H, member...
KCNH7                 0.052   potassium voltage-gated channel, subfamily H, member...
LOC100294364          0.024   PREDICTED: hypothetical protein 
LOC100294088          0.023   PREDICTED: hypothetical protein, partial 
C16orf89              0.022   hypothetical protein LOC146556 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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