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Name: CNGA3 Sequence: fasta or formatted (676aa) NCBI GI: 120433600
Description:

cyclic nucleotide gated channel alpha 3 isoform 2

Referenced in:

Calcium and TRP Cation Channels
Photoreceptors and Related Functions

Other entries for this name:
alt prot [694aa] cyclic nucleotide gated channel alpha 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         43           2
 C cysteine            0.9          6           1
 D aspartate           6.5         44           2
 E glutamate           6.2         42           2
 F phenylalanine       4.3         29           2
 G glycine             6.1         41           3
 H histidine           1.5         10           2
 I isoleucine          5.8         39           3
 K lysine              7.1         48           3
 L leucine            11.2         76           2
 M methionine          1.9         13           1
 N asparagine          3.8         26           1
 P proline             3.3         22           3
 Q glutamine           4.0         27           2
 R arginine            6.2         42           2
 S serine              7.1         48           3
 T threonine           5.6         38           3
 V valine              6.7         45           3
 W tryptophan          1.5         10           1
 Y tyrosine            4.0         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclic nucleotide gated channel alpha 3 isoform 2 [... 
CNGA3                 0.990   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA1                 0.623   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.623   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CNGA2                 0.611   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.434   cyclic nucleotide gated channel alpha 4 
CNGB1                 0.220   cyclic nucleotide gated channel beta 1 isoform a [H...
CNGB3                 0.214   cyclic nucleotide gated channel beta 3 
HCN4                  0.126   hyperpolarization activated cyclic nucleotide-gated p...
HCN1                  0.122   hyperpolarization activated cyclic nucleotide-gated...
HCN2                  0.118   hyperpolarization activated cyclic nucleotide-gated...
HCN3                  0.118   hyperpolarization activated cyclic nucleotide-gated ...
KCNH7                 0.105   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.104   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.100   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.100   voltage-gated potassium channel, subfamily H, member ...
KCNH1                 0.098   potassium voltage-gated channel, subfamily H, member ...
KCNH8                 0.097   potassium voltage-gated channel, subfamily H, member...
KCNH4                 0.097   potassium voltage-gated channel, subfamily H, member ...
KCNH3                 0.096   potassium voltage-gated channel, subfamily H (eag-re...
KCNH5                 0.095   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.093   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.092   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.089   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.086   voltage-gated potassium channel, subfamily H, member...
KCNH5                 0.082   potassium voltage-gated channel, subfamily H, member...
KCNH7                 0.052   potassium voltage-gated channel, subfamily H, member...
PRKG1                 0.014   protein kinase, cGMP-dependent, type I isoform 1 [H...
PRKG1                 0.014   protein kinase, cGMP-dependent, type I isoform 2 [Ho...
PRKG2                 0.013   protein kinase, cGMP-dependent, type II 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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