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Search of human proteins with 27777636
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27777636 transcription factor 3 isoform E12 [Homo sapiens]
(654 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27777636 transcription factor 3 isoform E12 [Homo sapiens] 1321 0.0
gi|209915594 transcription factor 3 isoform E47 [Homo sapiens] 1268 0.0
gi|46370084 transcription factor 12 isoform b [Homo sapiens] 597 e-170
gi|4507391 transcription factor 12 isoform b [Homo sapiens] 597 e-170
gi|46370082 transcription factor 12 isoform a [Homo sapiens] 586 e-167
gi|46370080 transcription factor 12 isoform a [Homo sapiens] 586 e-167
gi|145312267 transcription factor 4 isoform a [Homo sapiens] 583 e-166
gi|4507399 transcription factor 4 isoform b [Homo sapiens] 578 e-165
gi|46370086 transcription factor 12 isoform c [Homo sapiens] 437 e-122
gi|57864582 hornerin [Homo sapiens] 61 3e-09
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 59 2e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 59 2e-08
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 58 3e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 58 3e-08
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 57 4e-08
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 57 7e-08
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 56 1e-07
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 55 3e-07
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 54 5e-07
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 54 5e-07
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 54 5e-07
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 54 5e-07
gi|5031805 insulin receptor substrate 1 [Homo sapiens] 54 6e-07
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 54 6e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 53 1e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 53 1e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 53 1e-06
gi|28559039 mediator complex subunit 1 [Homo sapiens] 52 1e-06
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 52 1e-06
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 51 3e-06
>gi|27777636 transcription factor 3 isoform E12 [Homo sapiens]
Length = 654
Score = 1321 bits (3420), Expect = 0.0
Identities = 654/654 (100%), Positives = 654/654 (100%)
Query: 1 MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWG 60
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWG
Sbjct: 1 MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWG 60
Query: 61 SGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGL 120
SGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGL
Sbjct: 61 SGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGL 120
Query: 121 TQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGL 180
TQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGL
Sbjct: 121 TQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGL 180
Query: 181 PSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPML 240
PSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPML
Sbjct: 181 PSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPML 240
Query: 241 GGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGAT 300
GGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGAT
Sbjct: 241 GGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGAT 300
Query: 301 YGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSP 360
YGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSP
Sbjct: 301 YGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSP 360
Query: 361 QGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLP 420
QGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLP
Sbjct: 361 QGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLP 420
Query: 421 GHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPD 480
GHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPD
Sbjct: 421 GHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPD 480
Query: 481 SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPDEDEDDLLPP 540
SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPDEDEDDLLPP
Sbjct: 481 SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPDEDEDDLLPP 540
Query: 541 EQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVIL 600
EQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVIL
Sbjct: 541 EQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVIL 600
Query: 601 NLEQQVRERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM 654
NLEQQVRERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM
Sbjct: 601 NLEQQVRERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM 654
>gi|209915594 transcription factor 3 isoform E47 [Homo sapiens]
Length = 651
Score = 1268 bits (3282), Expect = 0.0
Identities = 630/654 (96%), Positives = 640/654 (97%), Gaps = 3/654 (0%)
Query: 1 MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWG 60
MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWG
Sbjct: 1 MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWG 60
Query: 61 SGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGL 120
SGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGL
Sbjct: 61 SGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGL 120
Query: 121 TQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGL 180
TQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGL
Sbjct: 121 TQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGL 180
Query: 181 PSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPML 240
PSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPML
Sbjct: 181 PSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPML 240
Query: 241 GGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGAT 300
GGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGAT
Sbjct: 241 GGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGAT 300
Query: 301 YGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSP 360
YGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSP
Sbjct: 301 YGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSP 360
Query: 361 QGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLP 420
QGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLP
Sbjct: 361 QGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLP 420
Query: 421 GHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPD 480
GHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPD
Sbjct: 421 GHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPD 480
Query: 481 SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPDEDEDDLLPP 540
SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTS D++L
Sbjct: 481 SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTS---STDEVLSL 537
Query: 541 EQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVIL 600
E+K R++ERR+ANNARER+RVRDINEAF+ELGRMCQ+HL S+K QTKLLIL QAV VIL
Sbjct: 538 EEKDLRDRERRMANNARERVRVRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVIL 597
Query: 601 NLEQQVRERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM 654
LEQQVRERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM
Sbjct: 598 GLEQQVRERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM 651
>gi|46370084 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 597 bits (1539), Expect = e-170
Identities = 353/699 (50%), Positives = 449/699 (64%), Gaps = 67/699 (9%)
Query: 3 QPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSG 62
Q QRMA +GTDKELSDLLDFS MF PV +GK RP +L +QF GSG+++R + SWG+
Sbjct: 4 QQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERGGTTSWGTS 63
Query: 63 DQSSSSFDPSRTFSEGTHFTE--------SHSSLSSSTFLGPGLGGKSGERGAYASFGRD 114
Q S S+D SR F++ H+++ +H LS + F+ L GK+ ERG+++ + RD
Sbjct: 64 GQPSPSYDSSRGFTDSPHYSDHLNDSRLGAHEGLSPTPFMNSNLMGKTSERGSFSLYSRD 123
Query: 115 AGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQP---K 171
G+ G Q+ L +L L SP LS SG GT+ YY + SSRRR S P K
Sbjct: 124 TGLPGC-QSSLLRQDLGLGSPAQLSSSGKPGTA-YYSFSATSSRRRPLHDSAALDPLQAK 181
Query: 172 KVRKVPPGLPSSVYPPS-SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSP 230
KVRKVPPGLPSSVY PS + +D+ R++ +YPS K P+S + + F++ DG+ H S++LWS
Sbjct: 182 KVRKVPPGLPSSVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGT-HNSSDLWSS 240
Query: 231 PG---QAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGA---EVN 284
Q GFG +LG +S + SS++G LH H+R+ Y H ++N
Sbjct: 241 SNGMSQPGFGGILGTSTSHM------------SQSSSYGNLHSHDRLSYPPHSVSPTDIN 288
Query: 285 GGLPSASSFSSAPGATYGGVS-SHTPPVSGADSLLGSRGTTAGSS--GDALGKALASIYS 341
LP SSF ++ V+ SHTPP++G+DS+LG+RG AGSS GDALGKALASIYS
Sbjct: 289 TSLPPMSSFHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYS 348
Query: 342 PDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLD--- 398
PDH+S++F S+PSTPVGSP L GTSQWPR G SPSY+ LH LQS++ED LD
Sbjct: 349 PDHTSSSFPSNPSTPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLQSRMEDRLDRLD 408
Query: 399 EAIHVLRSHAVGTA-------GDMHTLL-PGH----GALASGFTGPMSLGGRHAGLVGGS 446
+AIHVLR+HAVG + D+H+LL P H G+L S + G + + + G+
Sbjct: 409 DAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAPIGSLNSNYGGSSLVASSRSASMVGT 468
Query: 447 HPEDGLAGSTSLMHNHAALPSQPGTLP-DLS-RPPDSY-SGLGRAGATAAASEIKREEKE 503
H ED S SL NH+ L S T DL+ + ++Y GL T +EIK E KE
Sbjct: 469 HRED----SVSLNGNHSVLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKTENKE 524
Query: 504 DEENTSAADHSEEEK-------KELK-APRARTSPDEDEDDLLPPEQKAEREKERRVANN 555
+EN S++ K K++K + R RTS +++DL PEQK EREKERR+ANN
Sbjct: 525 KDENLHEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDL-NPEQKIEREKERRMANN 583
Query: 556 ARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNLNPKA 615
ARERLRVRDINEAFKELGRMCQLHL SEKPQTKLLILHQAV+VIL+LEQQVRERNLNPKA
Sbjct: 584 ARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKA 643
Query: 616 ACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM 654
ACLKRREEEKVS V +P L HPGLSE NP GHM
Sbjct: 644 ACLKRREEEKVSAVSAEPPTTLPGTHPGLSETTNPMGHM 682
>gi|4507391 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 597 bits (1539), Expect = e-170
Identities = 353/699 (50%), Positives = 449/699 (64%), Gaps = 67/699 (9%)
Query: 3 QPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSG 62
Q QRMA +GTDKELSDLLDFS MF PV +GK RP +L +QF GSG+++R + SWG+
Sbjct: 4 QQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERGGTTSWGTS 63
Query: 63 DQSSSSFDPSRTFSEGTHFTE--------SHSSLSSSTFLGPGLGGKSGERGAYASFGRD 114
Q S S+D SR F++ H+++ +H LS + F+ L GK+ ERG+++ + RD
Sbjct: 64 GQPSPSYDSSRGFTDSPHYSDHLNDSRLGAHEGLSPTPFMNSNLMGKTSERGSFSLYSRD 123
Query: 115 AGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQP---K 171
G+ G Q+ L +L L SP LS SG GT+ YY + SSRRR S P K
Sbjct: 124 TGLPGC-QSSLLRQDLGLGSPAQLSSSGKPGTA-YYSFSATSSRRRPLHDSAALDPLQAK 181
Query: 172 KVRKVPPGLPSSVYPPS-SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSP 230
KVRKVPPGLPSSVY PS + +D+ R++ +YPS K P+S + + F++ DG+ H S++LWS
Sbjct: 182 KVRKVPPGLPSSVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGT-HNSSDLWSS 240
Query: 231 PG---QAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGA---EVN 284
Q GFG +LG +S + SS++G LH H+R+ Y H ++N
Sbjct: 241 SNGMSQPGFGGILGTSTSHM------------SQSSSYGNLHSHDRLSYPPHSVSPTDIN 288
Query: 285 GGLPSASSFSSAPGATYGGVS-SHTPPVSGADSLLGSRGTTAGSS--GDALGKALASIYS 341
LP SSF ++ V+ SHTPP++G+DS+LG+RG AGSS GDALGKALASIYS
Sbjct: 289 TSLPPMSSFHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYS 348
Query: 342 PDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLD--- 398
PDH+S++F S+PSTPVGSP L GTSQWPR G SPSY+ LH LQS++ED LD
Sbjct: 349 PDHTSSSFPSNPSTPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLQSRMEDRLDRLD 408
Query: 399 EAIHVLRSHAVGTA-------GDMHTLL-PGH----GALASGFTGPMSLGGRHAGLVGGS 446
+AIHVLR+HAVG + D+H+LL P H G+L S + G + + + G+
Sbjct: 409 DAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAPIGSLNSNYGGSSLVASSRSASMVGT 468
Query: 447 HPEDGLAGSTSLMHNHAALPSQPGTLP-DLS-RPPDSY-SGLGRAGATAAASEIKREEKE 503
H ED S SL NH+ L S T DL+ + ++Y GL T +EIK E KE
Sbjct: 469 HRED----SVSLNGNHSVLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKTENKE 524
Query: 504 DEENTSAADHSEEEK-------KELK-APRARTSPDEDEDDLLPPEQKAEREKERRVANN 555
+EN S++ K K++K + R RTS +++DL PEQK EREKERR+ANN
Sbjct: 525 KDENLHEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDL-NPEQKIEREKERRMANN 583
Query: 556 ARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNLNPKA 615
ARERLRVRDINEAFKELGRMCQLHL SEKPQTKLLILHQAV+VIL+LEQQVRERNLNPKA
Sbjct: 584 ARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKA 643
Query: 616 ACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM 654
ACLKRREEEKVS V +P L HPGLSE NP GHM
Sbjct: 644 ACLKRREEEKVSAVSAEPPTTLPGTHPGLSETTNPMGHM 682
>gi|46370082 transcription factor 12 isoform a [Homo sapiens]
Length = 706
Score = 586 bits (1510), Expect = e-167
Identities = 351/723 (48%), Positives = 449/723 (62%), Gaps = 91/723 (12%)
Query: 3 QPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSG 62
Q QRMA +GTDKELSDLLDFS MF PV +GK RP +L +QF GSG+++R + SWG+
Sbjct: 4 QQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERGGTTSWGTS 63
Query: 63 DQSSSSFDPSRTFSEGTHFTE--------SHSSLSSSTFLGPGLGGKSGERGAYASFGRD 114
Q S S+D SR F++ H+++ +H LS + F+ L GK+ ERG+++ + RD
Sbjct: 64 GQPSPSYDSSRGFTDSPHYSDHLNDSRLGAHEGLSPTPFMNSNLMGKTSERGSFSLYSRD 123
Query: 115 AGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQP---K 171
G+ G Q+ L +L L SP LS SG GT+ YY + SSRRR S P K
Sbjct: 124 TGLPGC-QSSLLRQDLGLGSPAQLSSSGKPGTA-YYSFSATSSRRRPLHDSAALDPLQAK 181
Query: 172 KVRKVPPGLPSSVYPPS-SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSP 230
KVRKVPPGLPSSVY PS + +D+ R++ +YPS K P+S + + F++ DG+ H S++LWS
Sbjct: 182 KVRKVPPGLPSSVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGT-HNSSDLWSS 240
Query: 231 PG---QAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGA---EVN 284
Q GFG +LG +S + SS++G LH H+R+ Y H ++N
Sbjct: 241 SNGMSQPGFGGILGTSTSHM------------SQSSSYGNLHSHDRLSYPPHSVSPTDIN 288
Query: 285 GGLPSASSFSSAPGATYGGVS-SHTPPVSGADSLLGSRGTTAGSS--GDALGKALASIYS 341
LP SSF ++ V+ SHTPP++G+DS+LG+RG AGSS GDALGKALASIYS
Sbjct: 289 TSLPPMSSFHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYS 348
Query: 342 PDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIE------- 394
PDH+S++F S+PSTPVGSP L GTSQWPR G SPSY+ LH L++++E
Sbjct: 349 PDHTSSSFPSNPSTPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLKNRVEQQLHEHL 408
Query: 395 --------------------DHLDEAIHVLRSHAVGTA-------GDMHTLL-PGH---- 422
D LD+AIHVLR+HAVG + D+H+LL P H
Sbjct: 409 QDAMSFLKDVCEQSRMEDRLDRLDDAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAPI 468
Query: 423 GALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLP-DLS-RPPD 480
G+L S + G + + + G+H ED S SL NH+ L S T DL+ + +
Sbjct: 469 GSLNSNYGGSSLVASSRSASMVGTHRED----SVSLNGNHSVLSSTVTTSSTDLNHKTQE 524
Query: 481 SY-SGLGRAGATAAASEIKREEKEDEENTSAADHSEEEK-------KELK-APRARTSPD 531
+Y GL T +EIK E KE +EN S++ K K++K + R RTS
Sbjct: 525 NYRGGLQSQSGTVVTTEIKTENKEKDENLHEPPSSDDMKSDDESSQKDIKVSSRGRTSST 584
Query: 532 EDEDDLLPPEQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLI 591
+++DL PEQK EREKERR+ANNARERLRVRDINEAFKELGRMCQLHL SEKPQTKLLI
Sbjct: 585 NEDEDL-NPEQKIEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLI 643
Query: 592 LHQAVSVILNLEQQVRERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPA 651
LHQAV+VIL+LEQQVRERNLNPKAACLKRREEEKVS V +P L HPGLSE NP
Sbjct: 644 LHQAVAVILSLEQQVRERNLNPKAACLKRREEEKVSAVSAEPPTTLPGTHPGLSETTNPM 703
Query: 652 GHM 654
GHM
Sbjct: 704 GHM 706
>gi|46370080 transcription factor 12 isoform a [Homo sapiens]
Length = 706
Score = 586 bits (1510), Expect = e-167
Identities = 351/723 (48%), Positives = 449/723 (62%), Gaps = 91/723 (12%)
Query: 3 QPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSG 62
Q QRMA +GTDKELSDLLDFS MF PV +GK RP +L +QF GSG+++R + SWG+
Sbjct: 4 QQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERGGTTSWGTS 63
Query: 63 DQSSSSFDPSRTFSEGTHFTE--------SHSSLSSSTFLGPGLGGKSGERGAYASFGRD 114
Q S S+D SR F++ H+++ +H LS + F+ L GK+ ERG+++ + RD
Sbjct: 64 GQPSPSYDSSRGFTDSPHYSDHLNDSRLGAHEGLSPTPFMNSNLMGKTSERGSFSLYSRD 123
Query: 115 AGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQP---K 171
G+ G Q+ L +L L SP LS SG GT+ YY + SSRRR S P K
Sbjct: 124 TGLPGC-QSSLLRQDLGLGSPAQLSSSGKPGTA-YYSFSATSSRRRPLHDSAALDPLQAK 181
Query: 172 KVRKVPPGLPSSVYPPS-SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSP 230
KVRKVPPGLPSSVY PS + +D+ R++ +YPS K P+S + + F++ DG+ H S++LWS
Sbjct: 182 KVRKVPPGLPSSVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGT-HNSSDLWSS 240
Query: 231 PG---QAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGA---EVN 284
Q GFG +LG +S + SS++G LH H+R+ Y H ++N
Sbjct: 241 SNGMSQPGFGGILGTSTSHM------------SQSSSYGNLHSHDRLSYPPHSVSPTDIN 288
Query: 285 GGLPSASSFSSAPGATYGGVS-SHTPPVSGADSLLGSRGTTAGSS--GDALGKALASIYS 341
LP SSF ++ V+ SHTPP++G+DS+LG+RG AGSS GDALGKALASIYS
Sbjct: 289 TSLPPMSSFHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYS 348
Query: 342 PDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIE------- 394
PDH+S++F S+PSTPVGSP L GTSQWPR G SPSY+ LH L++++E
Sbjct: 349 PDHTSSSFPSNPSTPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLKNRVEQQLHEHL 408
Query: 395 --------------------DHLDEAIHVLRSHAVGTA-------GDMHTLL-PGH---- 422
D LD+AIHVLR+HAVG + D+H+LL P H
Sbjct: 409 QDAMSFLKDVCEQSRMEDRLDRLDDAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAPI 468
Query: 423 GALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLP-DLS-RPPD 480
G+L S + G + + + G+H ED S SL NH+ L S T DL+ + +
Sbjct: 469 GSLNSNYGGSSLVASSRSASMVGTHRED----SVSLNGNHSVLSSTVTTSSTDLNHKTQE 524
Query: 481 SY-SGLGRAGATAAASEIKREEKEDEENTSAADHSEEEK-------KELK-APRARTSPD 531
+Y GL T +EIK E KE +EN S++ K K++K + R RTS
Sbjct: 525 NYRGGLQSQSGTVVTTEIKTENKEKDENLHEPPSSDDMKSDDESSQKDIKVSSRGRTSST 584
Query: 532 EDEDDLLPPEQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLI 591
+++DL PEQK EREKERR+ANNARERLRVRDINEAFKELGRMCQLHL SEKPQTKLLI
Sbjct: 585 NEDEDL-NPEQKIEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLI 643
Query: 592 LHQAVSVILNLEQQVRERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPA 651
LHQAV+VIL+LEQQVRERNLNPKAACLKRREEEKVS V +P L HPGLSE NP
Sbjct: 644 LHQAVAVILSLEQQVRERNLNPKAACLKRREEEKVSAVSAEPPTTLPGTHPGLSETTNPM 703
Query: 652 GHM 654
GHM
Sbjct: 704 GHM 706
>gi|145312267 transcription factor 4 isoform a [Homo sapiens]
Length = 671
Score = 583 bits (1502), Expect = e-166
Identities = 360/700 (51%), Positives = 463/700 (66%), Gaps = 75/700 (10%)
Query: 1 MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWG 60
M+ QRMA +GTDKELSDLLDFS MF PV++GK P SLA F GS +EDR SSGSWG
Sbjct: 1 MHHQQRMAALGTDKELSDLLDFSAMFSPPVSSGKNGPTSLASGHFTGSNVEDRSSSGSWG 60
Query: 61 SGDQSSSSFDPSRTFSEGT---HFTE----SHSSLSSSTFLGPGLGGKSGERGAYASFGR 113
+G S PSR + +GT H T SH +LS F+ + K+ ERG+Y+S+GR
Sbjct: 61 NGGHPS----PSRNYGDGTPYDHMTSRDLGSHDNLSPP-FVNSRIQSKT-ERGSYSSYGR 114
Query: 114 DAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGS-LDTQPKK 172
++ + G Q L G++ + +PG LSP+ K SQYY S + RRR S ++ Q KK
Sbjct: 115 ESNLQGCHQQSLLGGDMDMGNPGTLSPT--KPGSQYYQYSSNNPRRRPLHSSAMEVQTKK 172
Query: 173 VRKVPPGLPSSVYPPS-SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPP 231
VRKVPPGLPSSVY PS S DY RD+ YPS+K +ST+P+ F++ DG H S++ WS
Sbjct: 173 VRKVPPGLPSSVYAPSASTADYNRDSPGYPSSKPATSTFPSSFFMQDG--HHSSDPWSSS 230
Query: 232 G---QAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHG-AEVNGGL 287
Q G+ MLG SS +P SS++ LH HER+ Y H A++N L
Sbjct: 231 SGMNQPGYAGMLGN-SSHIP------------QSSSYCSLHPHERLSYPSHSSADINSSL 277
Query: 288 PSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT-TAGSS--GDALGKALASIYSPDH 344
P S+F + G + SS TPP +G DS++ +RG+ AGSS GDALGKALASIYSPDH
Sbjct: 278 PPMSTFHRS-GTNHYSTSSCTPPANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDH 336
Query: 345 SSNNFSSSPSTPVGSPQGL-AGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHL---DEA 400
++N+FSS+PSTPVGSP L AGT+ W R G + SP+Y+G LH LQS+IED L D+A
Sbjct: 337 TNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDA 396
Query: 401 IHVLRSHAVGTA-------GDMHTLL-PGH----GALASGFTGPMSLGGRHAGLVGGSHP 448
IHVLR+HAVG + GDMH ++ P H G L SG+ + RH+ +VG +H
Sbjct: 397 IHVLRNHAVGPSTAMPGGHGDMHGIIGPSHNGAMGGLGSGYGTGLLSANRHSLMVG-THR 455
Query: 449 EDGLA--GSTSLMHNHAALPSQP---GTLPDLSRPPDSYSGL--GRAG--ATAAASEIKR 499
EDG+A GS SL+ N +P P T PDL+ P D Y G+ G G ++ +SEIK
Sbjct: 456 EDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKS 515
Query: 500 EEKEDE--ENTSAADHS--EEEKKELKA-PRARTSPDEDEDDLLPPEQKAEREKERRVAN 554
+++ DE ++T +++ +++KK++K+ R+R+S ++DED L PEQKAEREKERR+AN
Sbjct: 516 DDEGDENLQDTKSSEDKKLDDDKKDIKSITRSRSSNNDDED--LTPEQKAEREKERRMAN 573
Query: 555 NARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNLNPK 614
NARERLRVRDINEAFKELGRM QLHL S+KPQTKLLILHQAV+VIL+LEQQVRERNLNPK
Sbjct: 574 NARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPK 633
Query: 615 AACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM 654
AACLKRREEEKVS P + L+ PHPG+ +A N G M
Sbjct: 634 AACLKRREEEKVSS--EPPPLSLAGPHPGMGDASNHMGQM 671
>gi|4507399 transcription factor 4 isoform b [Homo sapiens]
Length = 667
Score = 578 bits (1491), Expect = e-165
Identities = 359/699 (51%), Positives = 460/699 (65%), Gaps = 77/699 (11%)
Query: 1 MNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWG 60
M+ QRMA +GTDKELSDLLDFS MF PV++GK P SLA F GS +EDR SSGSWG
Sbjct: 1 MHHQQRMAALGTDKELSDLLDFSAMFSPPVSSGKNGPTSLASGHFTGSNVEDRSSSGSWG 60
Query: 61 SGDQSSSSFDPSRTFSEGT---HFTE----SHSSLSSSTFLGPGLGGKSGERGAYASFGR 113
+G S PSR + +GT H T SH +LS F+ + K+ ERG+Y+S+GR
Sbjct: 61 NGGHPS----PSRNYGDGTPYDHMTSRDLGSHDNLSPP-FVNSRIQSKT-ERGSYSSYGR 114
Query: 114 DAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGS-LDTQPKK 172
++ + G Q L G++ + +PG LSP+ K SQYY S + RRR S ++ Q KK
Sbjct: 115 ESNLQGCHQQSLLGGDMDMGNPGTLSPT--KPGSQYYQYSSNNPRRRPLHSSAMEVQTKK 172
Query: 173 VRKVPPGLPSSVYPPS-SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPP 231
VRKVPPGLPSSVY PS S DY RD+ YPS+K +ST+P+ F++ DG H S++ WS
Sbjct: 173 VRKVPPGLPSSVYAPSASTADYNRDSPGYPSSKPATSTFPSSFFMQDG--HHSSDPWSSS 230
Query: 232 G---QAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHG-AEVNGGL 287
Q G+ MLG SS +P SS++ LH HER+ Y H A++N L
Sbjct: 231 SGMNQPGYAGMLGN-SSHIP------------QSSSYCSLHPHERLSYPSHSSADINSSL 277
Query: 288 PSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT-TAGSS--GDALGKALASIYSPDH 344
P S+F + G + SS TPP +G DS++ +RG+ AGSS GDALGKALASIYSPDH
Sbjct: 278 PPMSTFHRS-GTNHYSTSSCTPPANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDH 336
Query: 345 SSNNFSSSPSTPVGSPQGL-AGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHL---DEA 400
++N+FSS+PSTPVGSP L AGT+ W R G + SP+Y+G LH LQS+IED L D+A
Sbjct: 337 TNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDA 396
Query: 401 IHVLRSHAVGTA-------GDMHTLL-PGH----GALASGFTGPMSLGGRHAGLVGGSHP 448
IHVLR+HAVG + GDMH ++ P H G L SG+ + RH+ +VG +H
Sbjct: 397 IHVLRNHAVGPSTAMPGGHGDMHGIIGPSHNGAMGGLGSGYGTGLLSANRHSLMVG-THR 455
Query: 449 EDGLA--GSTSLMHNHAALPSQP---GTLPDLSRPPDSYSGL--GRAG--ATAAASEIKR 499
EDG+A GS SL+ N +P P T PDL+ P D Y G+ G G ++ +SEIK
Sbjct: 456 EDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKS 515
Query: 500 EEKEDE--ENTSAADHS--EEEKKELKAPRARTSPDEDEDDLLPPEQKAEREKERRVANN 555
+++ DE ++T +++ +++KK++K+ TS ++DED L PEQKAEREKERR+ANN
Sbjct: 516 DDEGDENLQDTKSSEDKKLDDDKKDIKSI---TSNNDDED--LTPEQKAEREKERRMANN 570
Query: 556 ARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNLNPKA 615
ARERLRVRDINEAFKELGRM QLHL S+KPQTKLLILHQAV+VIL+LEQQVRERNLNPKA
Sbjct: 571 ARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPKA 630
Query: 616 ACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM 654
ACLKRREEEKVS P + L+ PHPG+ +A N G M
Sbjct: 631 ACLKRREEEKVSS--EPPPLSLAGPHPGMGDASNHMGQM 667
>gi|46370086 transcription factor 12 isoform c [Homo sapiens]
Length = 512
Score = 437 bits (1124), Expect = e-122
Identities = 261/508 (51%), Positives = 330/508 (64%), Gaps = 54/508 (10%)
Query: 183 SVYPPS-SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPG---QAGFGP 238
+VY PS + +D+ R++ +YPS K P+S + + F++ DG+ H S++LWS Q GFG
Sbjct: 23 TVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGT-HNSSDLWSSSNGMSQPGFGG 81
Query: 239 MLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGA---EVNGGLPSASSFSS 295
+LG +S + SS++G LH H+R+ Y H ++N LP SSF
Sbjct: 82 ILGTSTSHM------------SQSSSYGNLHSHDRLSYPPHSVSPTDINTSLPPMSSFHR 129
Query: 296 APGATYGGVS-SHTPPVSGADSLLGSRGTTAGSS--GDALGKALASIYSPDHSSNNFSSS 352
++ V+ SHTPP++G+DS+LG+RG AGSS GDALGKALASIYSPDH+S++F S+
Sbjct: 130 GSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSSSFPSN 189
Query: 353 PSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLD---EAIHVLRSHAV 409
PSTPVGSP L GTSQWPR G SPSY+ LH LQS++ED LD +AIHVLR+HAV
Sbjct: 190 PSTPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAV 249
Query: 410 GTA-------GDMHTLL-PGH----GALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTS 457
G + D+H+LL P H G+L S + G + + + G+H ED S S
Sbjct: 250 GPSTSLPAGHSDIHSLLGPSHNAPIGSLNSNYGGSSLVASSRSASMVGTHRED----SVS 305
Query: 458 LMHNHAALPSQPGTLP-DLS-RPPDSY-SGLGRAGATAAASEIKREEKEDEENTSAADHS 514
L NH+ L S T DL+ + ++Y GL T +EIK E KE +EN S
Sbjct: 306 LNGNHSVLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKTENKEKDENLHEPPSS 365
Query: 515 EEEK-------KELK-APRARTSPDEDEDDLLPPEQKAEREKERRVANNARERLRVRDIN 566
++ K K++K + R RTS +++DL PEQK EREKERR+ANNARERLRVRDIN
Sbjct: 366 DDMKSDDESSQKDIKVSSRGRTSSTNEDEDL-NPEQKIEREKERRMANNARERLRVRDIN 424
Query: 567 EAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLEQQVRERNLNPKAACLKRREEEKV 626
EAFKELGRMCQLHL SEKPQTKLLILHQAV+VIL+LEQQVRERNLNPKAACLKRREEEKV
Sbjct: 425 EAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRREEEKV 484
Query: 627 SGVVGDPQMVLSAPHPGLSEAHNPAGHM 654
S V +P L HPGLSE NP GHM
Sbjct: 485 SAVSAEPPTTLPGTHPGLSETTNPMGHM 512
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 61.2 bits (147), Expect = 3e-09
Identities = 114/439 (25%), Positives = 154/439 (35%), Gaps = 55/439 (12%)
Query: 32 NGKGRPASLAGAQFG-GSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSS 90
+G G SL Q G GSG PS G GSG SSS+ P R+ G+ ++ S S
Sbjct: 986 HGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYRS---GSGWSSSRGPYES 1042
Query: 91 STFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYY 150
+ GLG + G + +G+ G + G ++ G S G G S
Sbjct: 1043 GSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHG----STSGQSSSCGQHGAS--- 1095
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTY 210
SG S GS +Q + G SG+ G S ++PS
Sbjct: 1096 ---SGQSSSHGQHGSGSSQSSGYGRQGSG---------SGQSPGHGQRGSGSRQSPSYGR 1143
Query: 211 PAPFYVADGSLHPSAELWSPPGQ-AGFG-PMLGGGSSPLPLPPGSGPVGSSGSSSTFGGL 268
G S + S G+ +GFG G S GSG SG SS +G
Sbjct: 1144 HGS---GSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSG----SGHSSGYG-- 1194
Query: 269 HQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSS 328
QH Q E +G +SS G+ S H SG+ + G
Sbjct: 1195 -QHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSRQSSGHGRQGSGS-----GHSPSRGRH 1248
Query: 329 GDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDG---- 384
G LG S H S + SS P S G + +G+ + + S G
Sbjct: 1249 GSGLGH---SSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSG 1305
Query: 385 -----GLHGLQSKIEDHLD-EAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGR 438
G HG S D E +S + G G + G+G +G +G GR
Sbjct: 1306 HFCSQGQHGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGYGRHGAG-SGQSPSRGR 1364
Query: 439 HAGLVGGSHPEDGLAGSTS 457
H G G G GS S
Sbjct: 1365 H-GSGSGHSSSYGQHGSGS 1382
Score = 61.2 bits (147), Expect = 3e-09
Identities = 117/510 (22%), Positives = 174/510 (34%), Gaps = 70/510 (13%)
Query: 47 GSGLEDRPSSGSWGSGDQSSSSF-----DPSRTFSEGTHFTES-HSSLSSSTFLGPGLGG 100
GS S G GSG SSS+ ++ S G H + S HSS G G
Sbjct: 1797 GSSTGQSSSHGQHGSGSSQSSSYGQQGSGSGQSPSRGRHGSGSGHSSSYGQHGSGSGWSS 1856
Query: 101 KSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRR 160
SG G + G+ +G G + + S + G SG + + + S SG S R
Sbjct: 1857 SSGRHG--SGSGQSSGFGHHESSSWQSSGYTQHGSG----SGHSSSYEQHGSRSGQSSRG 1910
Query: 161 AADGSLDTQPKKVRKVPPGLPSSV----YPPSSGEDYGRDATAYPSAKTPSSTYPAPFYV 216
GS + G S+ + SG+ + S SS+Y P+
Sbjct: 1911 EQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSY-GPYGS 1969
Query: 217 ADGSLHPSAELWSP---PGQAGFGPM--LGGGSSPLPLPPGSGPVG-SSGSSSTFG---- 266
G WS P ++G G LG S G G G SSG SST G
Sbjct: 1970 GSG--------WSSSRGPYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGS 2021
Query: 267 --------GLHQHERMGYQLHGAEVNGGLPSA------SSFSSAPGATYGGVSSHTPPVS 312
G H HG +G S+ S +PG G S P
Sbjct: 2022 ASGQSSSCGQHGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSY 2081
Query: 313 GADSLLGSRGTTAGSSGDALGKA-------LASIYSPDHSSNNFSSSPSTPVGSPQGLAG 365
G R +++G G LG++ +S S +S + S S+ G +G
Sbjct: 2082 GRHGSGSGRSSSSGQHGPGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSG 2141
Query: 366 -TSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGA 424
+S+ R G+ S Y G HG S+ H +G H+ G
Sbjct: 2142 QSSRGERHGSSSGSSSRY--GQHGSGSRQSS----------GHGRQGSGSGHSPSRGRHG 2189
Query: 425 LASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSG 484
SG + G +G P + +G +S+ H + +
Sbjct: 2190 SGSGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCS 2249
Query: 485 LGRAGATAA-ASEIKREEKEDEENTSAADH 513
G+ G+T+ +S +E +++S H
Sbjct: 2250 QGQHGSTSGQSSTFDQEGSSTGQSSSHGQH 2279
Score = 60.8 bits (146), Expect = 4e-09
Identities = 113/439 (25%), Positives = 154/439 (35%), Gaps = 55/439 (12%)
Query: 32 NGKGRPASLAGAQFG-GSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSS 90
+G G SL Q G GSG PS G GSG SSS+ P + G+ ++ S S
Sbjct: 2396 HGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSP---YGSGSGWSSSRGPYES 2452
Query: 91 STFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYY 150
+ GLG + G + +G+ G + G ++ G S G G S
Sbjct: 2453 GSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHG----STSGQSSSCGQHGAS--- 2505
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTY 210
SG S GS +Q + G SG+ G S ++PS
Sbjct: 2506 ---SGQSSSHGQHGSGSSQSSGYGRQGSG---------SGQSPGHGQRGSGSRQSPSYGR 2553
Query: 211 PAPFYVADGSLHPSAELWSPPGQ-AGFG-PMLGGGSSPLPLPPGSGPVGSSGSSSTFGGL 268
G S + S G+ +GFG G S GSG SG SS +G
Sbjct: 2554 HGS---GSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSG----SGHSSGYG-- 2604
Query: 269 HQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSS 328
QH Q E +G +SS G+ S H SG+ + + G
Sbjct: 2605 -QHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSRQSSGHGRQGSGS-----GQSPSRGRH 2658
Query: 329 GDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDG---- 384
G LG S H S + SS P S G + +G+ + + S G
Sbjct: 2659 GSGLGH---SSSHGQHGSGSGRSSSRGPYESRLGHSSVFGQHESGSGHSSAYSQHGSGSG 2715
Query: 385 -----GLHGLQSKIEDHLD-EAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGR 438
G HG S D E +S + G G + G+G +G +G GR
Sbjct: 2716 HFCSQGQHGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGYGRHGAG-SGQSLSHGR 2774
Query: 439 HAGLVGGSHPEDGLAGSTS 457
H G G G GS S
Sbjct: 2775 H-GSGSGQSSSYGQHGSGS 2792
Score = 60.1 bits (144), Expect = 6e-09
Identities = 127/511 (24%), Positives = 172/511 (33%), Gaps = 53/511 (10%)
Query: 32 NGKGRPASLAGAQFG-GSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSS 90
+G G SL Q G GSG PS G GSG SSS+ P + G+ ++ S S
Sbjct: 1926 HGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGP---YGSGSGWSSSRGPYES 1982
Query: 91 STFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYY 150
+ GLG + G + +G+ G + G ++ G S G G S
Sbjct: 1983 GSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHG----SASGQSSSCGQHGAS--- 2035
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTY 210
SG S GS +Q + G SG+ G S ++PS
Sbjct: 2036 ---SGQSSSHGQHGSGSSQSSGYGRQGSG---------SGQSPGHGQRGSGSRQSPSYGR 2083
Query: 211 PAPFYVADGSLHPSAELWSPPG---QAGFG-PMLGGGSSPLPLPPGSGPVGSSG---SSS 263
GS S+ PG +GFG G S GSG SSG S
Sbjct: 2084 H-----GSGSGRSSSSGQHGPGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGS 2138
Query: 264 TFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTP------PVSGADSL 317
G + ER G + G S S SS G G S H+P SG S
Sbjct: 2139 RSGQSSRGERHGSSSGSSSRYGQHGSGSRQSSGHG-RQGSGSGHSPSRGRHGSGSGHSSS 2197
Query: 318 LGSRGTTAG---SSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGA 374
G G+ +G S G ++ S H S + SS + GS G SQ
Sbjct: 2198 HGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSG-HFCSQGQHGST 2256
Query: 375 PGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMS 434
G S G QS H +S + G G P G SG +G S
Sbjct: 2257 SGQSSTFDQEGSSTGQS--SSHGQHGSGSSQSSSYGQQGSGSGQSPSRGRHGSG-SGHSS 2313
Query: 435 LGGRHAGLVGGSHPE----DGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGA 490
G+H G S G S+ H+ ++ G S S S
Sbjct: 2314 SYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQHGSR 2373
Query: 491 TAAASEIKREEKEDEENTSAADHSEEEKKEL 521
+ +S +R ++S H ++ L
Sbjct: 2374 SGQSSRGERHGSSSGSSSSYGQHGSGSRQSL 2404
Score = 59.7 bits (143), Expect = 8e-09
Identities = 106/402 (26%), Positives = 140/402 (34%), Gaps = 53/402 (13%)
Query: 32 NGKGRPASLAGAQFG-GSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSS 90
+G G SL Q G GSG PS G GSG SSS+ P + G+ ++ S S
Sbjct: 1456 HGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSP---YGSGSGWSSSRGPYES 1512
Query: 91 STFLGPGLG---GKSGERGAYASFGRDAGVGGL-TQAGFLSGELAL-----NSPGPLSPS 141
+ GLG +SG+ Y G +G Q G SG+ + S G S
Sbjct: 1513 GSSHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSH 1572
Query: 142 GMKGTSQYYP-------SYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYG 194
G G+ S SG S GS Q + G S G G
Sbjct: 1573 GQHGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLG 1632
Query: 195 RDA--TAYPSAKTPSSTYPAPFYVADGSLHPS--AELWSPPGQAGFGPMLGGGS------ 244
+ + S+ SS+Y GS H S + S GQ+ G G S
Sbjct: 1633 ESSGFGHHESSSGQSSSYSQH---GSGSGHSSGYGQHGSRSGQSSRGERHGSSSRSSSRY 1689
Query: 245 ----SPLPLPPGSGPVGSSGSSSTFGGLH--------QHERMGYQLHGAEVNGGLPSASS 292
S G G GS S G H H + G + G S S
Sbjct: 1690 GQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSG 1749
Query: 293 FSSA-----PGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSN 347
SS G+ + S SG G G+T+G S + ++ S H +
Sbjct: 1750 HSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQH 1809
Query: 348 NFSSSPSTPVGSPQGLAGTSQWPRAGAPGALS-PSYDGGLHG 388
SS S+ G QG +G+ Q P G G+ S S G HG
Sbjct: 1810 GSGSSQSSSYGQ-QG-SGSGQSPSRGRHGSGSGHSSSYGQHG 1849
Score = 58.2 bits (139), Expect = 2e-08
Identities = 122/521 (23%), Positives = 172/521 (33%), Gaps = 64/521 (12%)
Query: 41 AGAQFGGSGLEDRPS--SGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGL 98
A F G S S S G D SS +H S + PG
Sbjct: 834 ASGHFSSQGRHGSTSGQSSSSGQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGH 893
Query: 99 GGKSGERGAYASFGR-DAGVGGLTQAG-FLSGELALNSPGPLSPSGMKGTSQYYPSYSGS 156
G + G S+GR +G G + +G SG + G S SG + S SG
Sbjct: 894 GQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGH 953
Query: 157 SRRRAADGSLDTQPKKVRK--VPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPF 214
S GS Q + + G SS SG R + + + S P+P
Sbjct: 954 SSSYEQHGSRSGQSSRSEQHGSSSGSSSSYGQHGSG---SRQSLGHGQHGSGSGQSPSPS 1010
Query: 215 YVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERM 274
GS + + P + G SS P GSG G + G +
Sbjct: 1011 RGRHGSGSGQSSSYGP-----YRSGSGWSSSRGPYESGSGHSSGLGHRESRSG----QSS 1061
Query: 275 GYQLHGAE--------VNGGLPSASSFSSAPGATYGGVSSHTPPVSGA--DSLLGSRGTT 324
GY HG+ +G SS GA+ G SSH SG+ S G +G+
Sbjct: 1062 GYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGSSQSSGYGRQGSG 1121
Query: 325 AGSSGDALGKALASIYSPD---HSSNNFSSSPSTPVGSPQGLAG-----------TSQWP 370
+G S + S SP H S + SS S GS G + +S +
Sbjct: 1122 SGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYS 1181
Query: 371 RAGAPGALSPSY--DGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASG 428
+ G+ S Y G G S+ E H + S G G GHG SG
Sbjct: 1182 QHGSGSGHSSGYGQHGSRSGQSSRGERHGSSS---GSSSHYGQHGSGSRQSSGHGRQGSG 1238
Query: 429 FTGPMSLGGRHAGLVG-----GSH-----------PEDGLAGSTSLMHNHAALPSQPGTL 472
+G GRH +G G H P + +G +S+ H +
Sbjct: 1239 -SGHSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAY 1297
Query: 473 PDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADH 513
+ G+ G+T+ S +E +S+ H
Sbjct: 1298 SQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSYGH 1338
Score = 58.2 bits (139), Expect = 2e-08
Identities = 121/502 (24%), Positives = 170/502 (33%), Gaps = 80/502 (15%)
Query: 47 GSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERG 106
G+G PS G GSG SSS+ G H + S S SSS G G G SG
Sbjct: 1353 GAGSGQSPSRGRHGSGSGHSSSY--------GQHGSGSGWS-SSSGRHGSGSGQSSGFGH 1403
Query: 107 AYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSL 166
+S + + G TQ G SG + S SG + + S SGSS GS
Sbjct: 1404 HESSSWQSS---GCTQHGSGSGHSSSYEQHG-SRSGQSSRGERHGSSSGSSSSYGQHGSG 1459
Query: 167 DTQ----------------PKKVRKVPPGLPSSVYPP-SSGEDYGRDATAYPSAKTPSST 209
Q P + R SS Y P SG + Y S + SS
Sbjct: 1460 SRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSSHSS- 1518
Query: 210 YPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLH 269
G H + G G G S+ G GS+ S+ G H
Sbjct: 1519 ---------GLGHRESRSGQSSGYGQHGSSSGHSST-------HGQHGSTSGQSSSCGQH 1562
Query: 270 QHERMGYQLHGAEVNGGLPSA------SSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT 323
HG +G S+ S +PG G S P G R +
Sbjct: 1563 GASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSS 1622
Query: 324 TAGSSGDALGKA-------LASIYSPDHSSNNFSSSPSTPVGSPQGLAG-TSQWPRAGAP 375
++G G LG++ +S S +S + S S+ G +G +S+ R G+
Sbjct: 1623 SSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSS 1682
Query: 376 GALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSL 435
S Y G HG S+ +S G G P G SG G S
Sbjct: 1683 SRSSSRY--GQHGSGSR------------QSSGHGRQGSGSGQSPSRGRHGSGL-GHSSS 1727
Query: 436 GGRHAGLVGGSH---PEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATA 492
G+H G S P + +G +S+ H + + G+ G+T+
Sbjct: 1728 HGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQHGSTS 1787
Query: 493 A-ASEIKREEKEDEENTSAADH 513
+S +E +++S H
Sbjct: 1788 GQSSTFDQEGSSTGQSSSHGQH 1809
Score = 57.8 bits (138), Expect = 3e-08
Identities = 122/476 (25%), Positives = 162/476 (34%), Gaps = 65/476 (13%)
Query: 47 GSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERG 106
GSG P+ G GSG SSS D T G+ + S SS SG+
Sbjct: 196 GSGSGQSPNYGQHGSGSGQSSSND---THGSGSGQSSGFSQHKSS----------SGQSS 242
Query: 107 AYASFGRDAG-VGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRR----RA 161
Y+ G +G G Q G SG+ +S G S +S Y SGS + R
Sbjct: 243 GYSQHGSGSGHSSGYGQHGSRSGQ---SSRGERHRSSSGSSSSYGQHGSGSRQSLGHGRQ 299
Query: 162 ADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSL 221
GS + G SS SG Y Y S +S + GS
Sbjct: 300 GSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQTSGFGQH---ESGSG 356
Query: 222 HPSAELWSPPGQ-AGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLH----------- 269
S +S G +G G S SG GSS S+ G H
Sbjct: 357 QSSG--YSKHGSGSGHSSSQGQHGSTSGQASSSGQHGSSSRQSSSYGQHESASRHSSGRG 414
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSG 329
QH Q G G S S G +G SS P VSG+ G ++G
Sbjct: 415 QHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGS-------GYSSGFGH 467
Query: 330 DALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGL 389
+S Y+ H S + SS GS G +S+ R G+ S SY G HG
Sbjct: 468 HESSSEHSSGYT-QHGSGSGHSSGHGQHGSRSG--QSSRGERQGSSAGSSSSY--GQHGS 522
Query: 390 QSKIEDHLDEAIHVLRS----------HAVGTAGDMHTLLPGHGALASGFTGPMSLGGRH 439
S+ L + H S H G+ G+G+ S GP G H
Sbjct: 523 GSR--QSLGHSRHGSGSGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYESGSGH 580
Query: 440 AGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAAS 495
+ +G ++ +G +S H + T S G+ GAT+ S
Sbjct: 581 SSGLG---HQESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGATSGQS 633
Score = 57.4 bits (137), Expect = 4e-08
Identities = 130/505 (25%), Positives = 170/505 (33%), Gaps = 84/505 (16%)
Query: 47 GSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLG------- 99
GSG P G GSG + S S+ G H + S S SS GPGLG
Sbjct: 2059 GSGSGQSPGHGQRGSGSRQSPSY--------GRHGSGSGRSSSSGQH-GPGLGESSGFGH 2109
Query: 100 --GKSGERGAYASFGRDAG-VGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGS 156
SG+ +Y+ G +G G Q G SG+ +S G S +S+Y SGS
Sbjct: 2110 HESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQ---SSRGERHGSSSGSSSRYGQHGSGS 2166
Query: 157 SRR----RAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPA 212
+ R GS + + G SS SG Y S SS +
Sbjct: 2167 RQSSGHGRQGSGSGHSPSRGRHGSGSGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQ 2226
Query: 213 PFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFG----GL 268
GS H SA G F GS+ S+G SS+ G G
Sbjct: 2227 H---ESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGSGS 2283
Query: 269 HQHERMGYQLHGAEVNGGLPSASSFSSAPG--ATYGGVSSHTPPVSGADSLLGSRGTTAG 326
Q G Q G+ G PS S G ++YG S SG S G G+ +G
Sbjct: 2284 SQSSSYGQQGSGS---GQSPSRGRHGSGSGHSSSYGQHGSG----SGWSSSSGRHGSGSG 2336
Query: 327 SS---GDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYD 383
S G + S H S + SS GS G + S+ R G+ S SY
Sbjct: 2337 QSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQHGSRSGQS--SRGERHGSSSGSSSSY- 2393
Query: 384 GGLHGLQSKIEDHLDEAIHVLRS----------HAVGTAGDMHTLLPGHGALASGFTGPM 433
G HG S+ L H S H G+ G G+ S GP
Sbjct: 2394 -GQHGSGSR--QSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPY 2450
Query: 434 SLGGRHAGLVG----------------------GSHPEDG-LAGSTSLMHNHAALPSQPG 470
G H+ +G +H + G +G +S H A Q
Sbjct: 2451 ESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSS 2510
Query: 471 TLPDLSRPPDSYSGLGRAGATAAAS 495
+ SG GR G+ + S
Sbjct: 2511 SHGQHGSGSSQSSGYGRQGSGSGQS 2535
Score = 57.0 bits (136), Expect = 5e-08
Identities = 139/590 (23%), Positives = 202/590 (34%), Gaps = 108/590 (18%)
Query: 31 TNGKGRPASLAGAQFG--GSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSL 88
++G+ S +++G GSG PS G GS SSS+ + S + H S+
Sbjct: 635 SHGQHGSGSSQSSRYGQQGSGSGQSPSRGRHGSDFGHSSSYGQHGSGSGWSSSNGPHGSV 694
Query: 89 SSSTFLGPGLGGKSGERGAYASFGRDAG-VGGLTQAGFLSGELAL-----NSPGPLSPSG 142
S + G G SG+ Y+ G + G + G SG+ + +S G S G
Sbjct: 695 SGQS-SGFGHKSGSGQSSGYSQHGSGSSHSSGYRKHGSRSGQSSRSEQHGSSSGLSSSYG 753
Query: 143 MKGTSQYYP-------SYSGSSRRRAADGSLDTQPKKVRKVPPGLPSS------------ 183
G+ + S SG S R GS + G S
Sbjct: 754 QHGSGSHQSSGHGRQGSGSGHSPSRVRHGSSSGHSSSHGQHGSGTSCSSSCGHYESGSGQ 813
Query: 184 -----VYPPSSGEDYGRDATA----------------------YPSAKTPSSTY----PA 212
+ SG+ Y + +A + S+ SS+Y A
Sbjct: 814 ASGFGQHESGSGQGYSQHGSASGHFSSQGRHGSTSGQSSSSGQHDSSSGQSSSYGQHESA 873
Query: 213 PFYVADGSLHPSAELWSP-PGQAGFG----PMLGGGSSPLPLPPGSGPVGS-SGSSSTFG 266
+ + H S SP GQ G G P G S SG GS SG SS FG
Sbjct: 874 SHHASGRGRHGSGSGQSPGHGQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFG 933
Query: 267 GLHQH-ERMGYQLHGA--------EVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSL 317
+ GY HG+ E +G SS S G++ G SS+ SG+
Sbjct: 934 HKSSSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRSEQHGSSSGSSSSYGQHGSGSRQS 993
Query: 318 L--GSRGTTAGSSGD------ALGKALASIYSPDHSSNNFSSS---------PSTPVGSP 360
L G G+ +G S G +S Y P S + +SSS S+ +G
Sbjct: 994 LGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYRSGSGWSSSRGPYESGSGHSSGLGHR 1053
Query: 361 QGLAGTSQW-----------PRAGAPGALS-PSYDGGLHGLQS-KIEDHLDEAIHVLRSH 407
+ +G S G G+ S S G HG S + H +S
Sbjct: 1054 ESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGSSQSS 1113
Query: 408 AVGTAGDMHTLLPGHGALASGFTGPMSLG--GRHAGLVGGSHPEDGLAGSTSLMHNHAAL 465
G G PGHG SG S G G +G S G +S +H +
Sbjct: 1114 GYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESS 1173
Query: 466 PSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHSE 515
Q + SG G+ G+ + S R E+ + S++ + +
Sbjct: 1174 SGQSSSYSQHGSGSGHSSGYGQHGSRSGQS--SRGERHGSSSGSSSHYGQ 1221
Score = 55.5 bits (132), Expect = 2e-07
Identities = 114/451 (25%), Positives = 148/451 (32%), Gaps = 79/451 (17%)
Query: 41 AGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGG 100
A G G S S G G + S S + GT F S SS GP + G
Sbjct: 406 ASRHSSGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSS-------GPYVSG 458
Query: 101 KSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRR 160
G G TQ G SG + + S SG + S +GSS
Sbjct: 459 SGYSSGFGHHESSSEHSSGYTQHGSGSGHSSGHGQHG-SRSGQSSRGERQGSSAGSSSSY 517
Query: 161 AADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGS 220
GS Q L S + SG+ + S SS+Y
Sbjct: 518 GQHGSGSRQ---------SLGHSRHGSGSGQSPSPSRGRHESGSRQSSSY---------- 558
Query: 221 LHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHG 280
G G+G G SS P GSG G + G + GY HG
Sbjct: 559 -----------GPHGYGS--GRSSSRGPYESGSGHSSGLGHQESRSG----QSSGYGQHG 601
Query: 281 AE--------VNGGLPSASSFSSAPGATYGGVSSHTPPVSGA--DSLLGSRGTTAGSS-- 328
+ +G SS GAT G SSH SG+ S G +G+ +G S
Sbjct: 602 SSSGHSSTHGQHGSTSGQSSSCGQHGATSGQSSSHGQHGSGSSQSSRYGQQGSGSGQSPS 661
Query: 329 ----GDALGKALASIYSPDHSSNNFSSS---------PSTPVGSPQGLAGTSQWPRAGAP 375
G G +S Y S + +SSS S+ G G +S + + G+
Sbjct: 662 RGRHGSDFGH--SSSYGQHGSGSGWSSSNGPHGSVSGQSSGFGHKSGSGQSSGYSQHGSG 719
Query: 376 GALSPSY--DGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPM 433
+ S Y G G S+ E H + S + G G GHG SG +G
Sbjct: 720 SSHSSGYRKHGSRSGQSSRSEQHGSSS---GLSSSYGQHGSGSHQSSGHGRQGSG-SGHS 775
Query: 434 SLGGRHAGLVG--GSHPEDGLAGSTSLMHNH 462
RH G SH + G S S H
Sbjct: 776 PSRVRHGSSSGHSSSHGQHGSGTSCSSSCGH 806
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 58.5 bits (140), Expect = 2e-08
Identities = 103/414 (24%), Positives = 134/414 (32%), Gaps = 47/414 (11%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PG GK GE+G G G + GF PGP P G G P G
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA----PGNDG 707
Query: 156 SSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFY 215
+ A G+ +Q + PG + P D G DA + +P
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG-DAGPKGADGSPGKDGVRGL- 765
Query: 216 VADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGS----GPVGSSGSSSTFGGLHQH 271
G + P +P + GP G + PG GP G +G + G Q
Sbjct: 766 --TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQP 823
Query: 272 ERMGYQLH-GAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGD 330
G GA+ + G P + + PG G V GA G+RG+
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGPAGPPG-PIGNV--------GAPGAKGARGSAGPPGAT 874
Query: 331 ALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQ 390
A + P S N P P G G + AG PG + P G G +
Sbjct: 875 GFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK 934
Query: 391 SKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHA--GLVG--GS 446
A G AG T PG +A G G + L G+ G G G
Sbjct: 935 GS-------------PGADGPAGAPGT--PGPQGIA-GQRGVVGLPGQRGERGFPGLPGP 978
Query: 447 HPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKRE 500
E G G + P P P L+ PP GR GA A R+
Sbjct: 979 SGEPGKQGPSGASGERG--PPGPMGPPGLAGPPGE---SGREGAPGAEGSPGRD 1027
Score = 48.1 bits (113), Expect = 2e-05
Identities = 80/326 (24%), Positives = 106/326 (32%), Gaps = 38/326 (11%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKG----TSQYYP 151
PG G G GA + G G GF A GP P G +G + P
Sbjct: 316 PGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGP 375
Query: 152 SYSGSSRRRAADGSLDTQP-KKVRKVPPGLPSSV-YPPSSGEDYGRDATAYPSAKTPSST 209
+ A + D QP K PG+ + +P + G + P K S
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE 435
Query: 210 YPAPFYVAD----GSLHPSAELWSPPGQAGFGPMLGGGSSP----LPLPPG--------- 252
AP D G P + PPG AG G P LP PPG
Sbjct: 436 PGAPGSKGDTGAKGEPGP-VGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRG 494
Query: 253 -------SGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVS 305
+GP G +G + G G G GLP A + +PG+
Sbjct: 495 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEA--GRPGEAGLPGAKGLTGSPGSPGPDGK 552
Query: 306 SHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAG 365
+ P +G D G G G+ G A + P ++ + V P G G
Sbjct: 553 TGPPGPAGQDGRPGPPG-PPGARGQA---GVMGFPGPKGAAGEPGKAGERGVPGPPGAVG 608
Query: 366 -TSQWPRAGAPGALSPSYDGGLHGLQ 390
+ AGA G P+ G G Q
Sbjct: 609 PAGKDGEAGAQGPPGPAGPAGERGEQ 634
Score = 47.4 bits (111), Expect = 4e-05
Identities = 81/295 (27%), Positives = 101/295 (34%), Gaps = 46/295 (15%)
Query: 97 GLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGS 156
G G+ G RG GR G G A PGP P+G G +P G+
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG----FPGAVGA 351
Query: 157 SRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYV 216
G ++ + + PG P + G D P AK + AP +
Sbjct: 352 KGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD--GQPGAKGANG---AP-GI 405
Query: 217 ADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGS-GPVGSSGSSSTFGGLHQHERMG 275
A P A S P G GP G+S P PGS G G+ G G G
Sbjct: 406 AGAPGFPGARGPSGPQGPG-GPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAG 464
Query: 276 YQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKA 335
+ G G P + PG G S P GAD + G +G AG G
Sbjct: 465 EE--GKRGARGEPGPTGLPGPPGERGGPGSRGFP---GADGVAGPKG-PAGERG------ 512
Query: 336 LASIYSPDHSSNNFSSSPSTPVGSP--QGLAGTSQWPRA----GAPGALSPSYDG 384
S P+ P GSP G G + P A G+PG SP DG
Sbjct: 513 --------------SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG--SPGPDG 551
Score = 43.5 bits (101), Expect = 6e-04
Identities = 79/316 (25%), Positives = 106/316 (33%), Gaps = 33/316 (10%)
Query: 95 GPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGT-------- 146
G G G++G G G G + G + +PG P G+ G
Sbjct: 906 GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPG 965
Query: 147 ---SQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSA 203
+ +P G S G ++ P G P PP + GR+ P A
Sbjct: 966 QRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG---ESGREGA--PGA 1020
Query: 204 KTPSSTYPAPFYVAD-GSLHPSAELWSP--PGQAG-FGPMLGGGSSPLPLPPG-SGPVGS 258
+ +P D G P+ +P PG G GP G P G +GPVG
Sbjct: 1021 EGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGP 1080
Query: 259 SGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLL 318
G+ G Q R G + + G+ FS G S SGA
Sbjct: 1081 VGARGPAG--PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA 1138
Query: 319 GSRGT--TAGSSG-DALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAP 375
G RG +AG+ G D L I P + P P G P G G P AG
Sbjct: 1139 GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPG-PPGPPGPPGPPSAGFD 1197
Query: 376 GALSP------SYDGG 385
+ P ++DGG
Sbjct: 1198 FSFLPQPPQEKAHDGG 1213
Score = 41.6 bits (96), Expect = 0.002
Identities = 80/326 (24%), Positives = 101/326 (30%), Gaps = 72/326 (22%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PG G +G G G++ G G + G + PGP P+G KG+
Sbjct: 886 PGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP-------- 937
Query: 156 SSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFY 215
ADG P G P + P G R P + +P
Sbjct: 938 -----GADG------------PAGAPGT--PGPQGIAGQRGVVGLPGQRGERG-FP---- 973
Query: 216 VADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPL-PPG-SGPVGSSGSSSTFGGLHQHER 273
G PS E PG+ G G P P+ PPG +GP G SG G R
Sbjct: 974 ---GLPGPSGE----PGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 1026
Query: 274 MGYQL----HGAEVNGGLPSASSFSSAPG----ATYGGVSSHTPPVSGADSL--LGSRGT 323
G G G P A APG A G T P A + +G+RG
Sbjct: 1027 DGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGP 1086
Query: 324 TA-----------GSSGDALGKALASIY----------SPDHSSNNFSSSPSTPVGSPQG 362
G GD K SP + +S P+ P G P
Sbjct: 1087 AGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGS 1146
Query: 363 LAGTSQWPRAGAPGALSPSYDGGLHG 388
+ G PG + P G G
Sbjct: 1147 AGAPGKDGLNGLPGPIGPPGPRGRTG 1172
Score = 37.0 bits (84), Expect = 0.057
Identities = 73/298 (24%), Positives = 96/298 (32%), Gaps = 48/298 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PGLGG + +Y + G ++ PGP+ PSG +G P G
Sbjct: 153 PGLGGNFAPQLSYGYDEKSTG--------------GISVPGPMGPSGPRG----LPGPPG 194
Query: 156 SSRRRAADGSLDTQPKKVRKVPPGLPSSVYPP-SSGEDYGRDATAYPSAKTPSSTYPAPF 214
+ + G + P G PP +G+D P + P P P
Sbjct: 195 APGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGP----PGP- 249
Query: 215 YVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERM 274
L +A L G GF + G P +GP G GS G Q
Sbjct: 250 -QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP----AGPKGEPGSPGENGAPGQMGPR 304
Query: 275 GYQLHGAEVNGGLPSASSFSSAPGAT-YGGVSSHTPPVS--GADSLLGSRGTTAGSSGDA 331
G L G G P + GAT G T P G +G++G AG G
Sbjct: 305 G--LPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG-EAGPQGP- 360
Query: 332 LGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRA-GAPGALSPSYDGGLHG 388
P P P G AG + P A G PGA + G+ G
Sbjct: 361 ---------RGSEGPQGVRGEPGPP--GPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Score = 36.2 bits (82), Expect = 0.098
Identities = 38/138 (27%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 57 GSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAG 116
G+ G D T +G + H S PG G GE+G + G AG
Sbjct: 1082 GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQG-PPGPPGSPGEQGPSGASG-PAG 1139
Query: 117 VGGLTQAGFLSGELALNS-PGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRK 175
G + G+ LN PGP+ P G +G R D P
Sbjct: 1140 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRG--------------RTGDAGPVGPPG---- 1181
Query: 176 VPPGLPSSVYPPSSGEDY 193
PPG P PPS+G D+
Sbjct: 1182 -PPGPPGPPGPPSAGFDF 1198
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 58.5 bits (140), Expect = 2e-08
Identities = 83/306 (27%), Positives = 98/306 (32%), Gaps = 32/306 (10%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PG GG GE G G G G G+ +PG P G+ G P G
Sbjct: 644 PGTGGPPGENGKPGEPGPKGDAGA---PGAPGGKGDAGAPGERGPPGLAGA----PGLRG 696
Query: 156 SSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPS-SGEDYGRDATAYPSAKTPSSTYPAP- 213
+ +G K PPG P + P G R P K P
Sbjct: 697 GAGPPGPEGG------KGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPG 750
Query: 214 ---FYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQ 270
DG P+ + PPG AG G G +P LP +GP GS G G
Sbjct: 751 ADGVPGKDGPRGPTGPI-GPPGPAGQPGDKGEGGAP-GLPGIAGPRGSPGERGETGPPGP 808
Query: 271 HERMGYQLHGAEVNG----GLPSASSFSSAPGAT--YGGVSSHTPPVSGADSLLGSRGTT 324
G E G G P PG GG PP G + G RG+
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPP--GPQGVKGERGSP 866
Query: 325 AGSSGDALGKALASIYSPDHSSNNFSSSPSTPVG--SPQGLAGTSQWPRAGAPGALSPSY 382
G A P + N PS G P G AG + P G+PG P
Sbjct: 867 GGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAP--GSPGVSGPKG 924
Query: 383 DGGLHG 388
D G G
Sbjct: 925 DAGQPG 930
Score = 47.8 bits (112), Expect = 3e-05
Identities = 105/378 (27%), Positives = 132/378 (34%), Gaps = 79/378 (20%)
Query: 27 PLPVTNGKGRPASLAGAQFGGS-GLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESH 85
P V +G P A F G+ GL P GS G+ S P + G +
Sbjct: 856 PQGVKGERGSPGGPGAAGFPGARGLPGPP--GSNGNPGPPGPSGSPGKDGPPGP--AGNT 911
Query: 86 SSLSSSTFLGP-GLGGKSGERGAYASFGRDA-----GVGGLTQAGFLSGELALNSP-GPL 138
+ S GP G G+ GE+G+ + G G+ G+T A L+G + P G
Sbjct: 912 GAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSP 971
Query: 139 SPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDAT 198
P G+KG S P +G S R G P GLP ++GE GRD
Sbjct: 972 GPQGVKGESG-KPGANGLSGERGPPG------------PQGLPG--LAGTAGEP-GRDG- 1014
Query: 199 AYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPG-SGPVG 257
P S DG P + SP G+ G G+ P PG GPVG
Sbjct: 1015 ------NPGS---------DGL--PGRD-GSPGGKGDRGENGSPGAPGAPGHPGPPGPVG 1056
Query: 258 SSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSL 317
+G S G G G P + APG GA +
Sbjct: 1057 PAGKSGDRGE-----------SGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGI 1105
Query: 318 LGSRG-----TTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVG--SPQGLAGTSQWP 370
G RG GS G A +I SP + P PVG P G GTS
Sbjct: 1106 KGHRGFPGNPGAPGSPGPA--GQQGAIGSPG------PAGPRGPVGPSGPPGKDGTS--- 1154
Query: 371 RAGAPGALSPSYDGGLHG 388
G PG + P G G
Sbjct: 1155 --GHPGPIGPPGPRGNRG 1170
Score = 47.0 bits (110), Expect = 6e-05
Identities = 116/456 (25%), Positives = 140/456 (30%), Gaps = 69/456 (15%)
Query: 97 GLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGS 156
G G +G RGA GRD GG G S G P G +G S P G
Sbjct: 510 GAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG-RPGPPGP 568
Query: 157 SRRRAADGSL--------DTQP-KKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAK--- 204
S R G + D P K + PG P PP + G P+
Sbjct: 569 SGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGD 628
Query: 205 --TPSSTYPAPFYVADGSLHPSAELWSP--PGQAG--FGPMLGGGSSPLPLPPGSGPVGS 258
P G+ P E P PG G P GG P GP G
Sbjct: 629 KGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGL 688
Query: 259 SGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPG--ATYGGVSSHTPPVS---- 312
+G+ GG G + GA G P A+ G GG+ S P
Sbjct: 689 AGAPGLRGGAGPPGPEGGK--GAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEP 746
Query: 313 ---GADSLLGS---RGTTA-----------GSSGDALGKALASIYSPDHS-SNNFSSSPS 354
GAD + G RG T G G+ L I P S + P
Sbjct: 747 GGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP 806
Query: 355 TPVGSPQGLAGTSQWP----RAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVG 410
P G P G G + P GAPG G+ G ++
Sbjct: 807 GPAGFP-GAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGS 865
Query: 411 TAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVG--GSHPEDGLAG-----------STS 457
G PG A G GP G + G G GS +DG G S
Sbjct: 866 PGGPGAAGFPG----ARGLPGPPGSNG-NPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVS 920
Query: 458 LMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAA 493
A P + G+ P PP + LG AG T A
Sbjct: 921 GPKGDAGQPGEKGS-PGAQGPPGAPGPLGIAGITGA 955
Score = 42.7 bits (99), Expect = 0.001
Identities = 121/486 (24%), Positives = 146/486 (30%), Gaps = 153/486 (31%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGF-----LSGEL-------------------- 130
PG G G GA S G+ G AGF GE+
Sbjct: 314 PGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP 373
Query: 131 -----ALNSPGP------------LSPSGMKGT--------------SQYYPSYSGSSRR 159
A PGP + P+G+ G + P G +
Sbjct: 374 QGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGE 433
Query: 160 RAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRD-------ATAYPSAK----TPSS 208
+G+ + + G+P P + GED G+D A P A P
Sbjct: 434 PGKNGAKGEPGPRGERGEAGIPG--VPGAKGED-GKDGSPGEPGANGLPGAAGERGAPGF 490
Query: 209 TYPAPFYVADGSLHPSAELWSP-----------PGQAGF--GPML--------GGGSSPL 247
PA G P+ E +P PG+ G GP + G GS
Sbjct: 491 RGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGK 550
Query: 248 PLPPGS-GPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSS 306
P PPGS G G G G Q MG+ G + N G P + PG G
Sbjct: 551 PGPPGSQGESGRPGPPGPSGPRGQPGVMGFP--GPKGNDGAPGKNGERGGPG---GPGPQ 605
Query: 307 HTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGT 366
P +G G G T G GD + P P G QGL GT
Sbjct: 606 GPPGKNGETGPQGPPGPT-GPGGD-----------------KGDTGPPGPQGL-QGLPGT 646
Query: 367 SQWP-RAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGAL 425
P G PG P D G G A G GD A
Sbjct: 647 GGPPGENGKPGEPGPKGDAGAPG-------------------APGGKGD---------AG 678
Query: 426 ASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGT--LPDLSRPPDSYS 483
A G GP L G GL GG+ P G + A P PG P L P
Sbjct: 679 APGERGPPGLAGA-PGLRGGAGPPGPEGGKGA-----AGPPGPPGAAGTPGLQGMPGERG 732
Query: 484 GLGRAG 489
GLG G
Sbjct: 733 GLGSPG 738
Score = 36.2 bits (82), Expect = 0.098
Identities = 67/249 (26%), Positives = 83/249 (33%), Gaps = 53/249 (21%)
Query: 96 PGLGGKSGERGAYASFGRDA---------GVGGLTQAGFLSGELALNSPGPLSPSGMKGT 146
PGL G +GE G + G D G G + G A PGP P G G
Sbjct: 1001 PGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1060
Query: 147 SQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAK-- 204
S SG + A G ++ + P G GE R A +
Sbjct: 1061 SG-DRGESGPAGPAGAPGPAGSRGAPGPQGPRG--------DKGETGERGAAGIKGHRGF 1111
Query: 205 -----TPSSTYPAPFYVADGSLHPSAELWSPPGQAG-FGPMLGGGSSPLPLPPG-SGPVG 257
P S PA A GS P+ P G G GP G+S P P G GP G
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPGPA----GPRGPVGPSGPPGKDGTSGHPGPIGPPGPRG 1167
Query: 258 SSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSL 317
+ G + G+ + G P APG GGV GA ++
Sbjct: 1168 NRGERGS--------------EGSPGHPGQPGPPGPPGAPGPCCGGV--------GAAAI 1205
Query: 318 LGSRGTTAG 326
G G AG
Sbjct: 1206 AGIGGEKAG 1214
Score = 34.3 bits (77), Expect = 0.37
Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 14/156 (8%)
Query: 29 PVTNGKGRPASLAG--AQFGGSGLEDRPS-SGSWGSGDQSSSSFDPSRTFSEGTHFTESH 85
P G PA +G + G +G P +GS G+ D T G + H
Sbjct: 1049 PGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGH 1108
Query: 86 SSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKG 145
+ PG G +G++GA S G G + +G + PGP+ P G +
Sbjct: 1109 RGFPGNPG-APGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPR- 1166
Query: 146 TSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLP 181
G+ R ++GS + PPG P
Sbjct: 1167 ---------GNRGERGSEGSPGHPGQPGPPGPPGAP 1193
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 57.8 bits (138), Expect = 3e-08
Identities = 122/459 (26%), Positives = 143/459 (31%), Gaps = 103/459 (22%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGF-----------LSGELAL-NSPGPLSPSGM 143
PG GGK G++G G VG + GF L G L +PG P G
Sbjct: 674 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA 733
Query: 144 KGT-----SQYYPSYSGSSRRRAADGSLDTQPKKVR-----KVPPGLPSSVYPPSSGEDY 193
G +Q P G R A G PK R K P G P G+D
Sbjct: 734 SGPAGPPGAQGPPGLQGMPGERGAAGI--AGPKGDRGDVGEKGPEGAP--------GKDG 783
Query: 194 GRDATAYPSAKTPSSTY----------PAPFYVADGSLHPSAELWSPPGQAGFGPMLGGG 243
GR T P+ PA A G+ E PPG AGF G
Sbjct: 784 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGET-GPPGPAGFAGPPGAD 842
Query: 244 SSP--------------LPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPS 289
P P GP G+ G G G Q G G P
Sbjct: 843 GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ--GPPGATGFPG 900
Query: 290 ASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTA--GSSGDALGKALASIYSPDHSSN 347
A+ PG+ P SG D G+RG + G +G+ + A P
Sbjct: 901 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG--PPGEKGE 958
Query: 348 NFSSSPSTPVG--SPQGLAG-------TSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLD 398
PS G PQGLAG Q G PG PS + G G
Sbjct: 959 PGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG---------- 1008
Query: 399 EAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHP--EDGLAGST 456
A G +GD P G TGP GR G G P DG AG
Sbjct: 1009 ---------APGASGDRG---PPGPVGPPGLTGPAGEPGRE-GSPGADGPPGRDGAAGVK 1055
Query: 457 SLMHNHAAL-----PSQPGTLPDLSRPPDSYSGLGRAGA 490
A+ P PG+ P + P G AGA
Sbjct: 1056 GDRGETGAVGAPGAPGPPGS-PGPAGPTGKQGDRGEAGA 1093
Score = 52.4 bits (124), Expect = 1e-06
Identities = 95/376 (25%), Positives = 122/376 (32%), Gaps = 57/376 (15%)
Query: 29 PVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSL 88
P G+ P G + G G P G+ GS + +S +P G + +
Sbjct: 371 PGAKGEAGPTGARGPE-GAQGPRGEP--GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 427
Query: 89 SSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQ 148
+ + PG G G +GA G G AGF + PGP P G
Sbjct: 428 AGAPGF-PGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA----- 481
Query: 149 YYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKT--- 205
P +G +R A G +P V P G P P + G+D A P
Sbjct: 482 --PGPAGEEGKRGARG----EPGGVG--PIGPPGERGAPGNRGFPGQDGLAGPKGAPGER 533
Query: 206 -------PSSTYPAPFYVADGSLHPSAELWSPPGQAG----FGPMLGGGSSPLPLPPGSG 254
P P + L + L PG AG GP G P PP G
Sbjct: 534 GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP--G 591
Query: 255 PVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGA 314
P G+ G G G G GLP A PG G + PP G
Sbjct: 592 PQGARGQPGVMGFPGPKGANGEP--GKAGEKGLPGAPGLRGLPGKD-GETGAAGPP--GP 646
Query: 315 DSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSP--QGLAGTSQWPRA 372
G RG G+ G + + L P G P QG+ G A
Sbjct: 647 AGPAGERG-EQGAPGPSGFQGLPG-----------PPGPPGEGGKPGDQGVPG-----EA 689
Query: 373 GAPGALSPSYDGGLHG 388
GAPG + P + G G
Sbjct: 690 GAPGLVGPRGERGFPG 705
Score = 52.4 bits (124), Expect = 1e-06
Identities = 103/363 (28%), Positives = 121/363 (33%), Gaps = 61/363 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELA----LNSPGPLSPSGMKGTSQYYP 151
PG G++G G A F G G A GE +PGP PSG G Q
Sbjct: 821 PGERGETGPPGP-AGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP-QGPT 878
Query: 152 SYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP 211
+G R A G PG V PP S + G PS K
Sbjct: 879 GVTGPKGARGAQGPPGATGF------PGAAGRVGPPGSNGNPGPPGPPGPSGK------- 925
Query: 212 APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPL--PPGSGPVGSSGSSSTFGGLH 269
DG + PPG+AG + G P P GP G+ G G
Sbjct: 926 ------DGPKGARGDS-GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAG 978
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPG--ATYGGVSSHTPPVS-GADSLLGSRGTTA- 325
Q +G L G G P S PG G PP G L G G
Sbjct: 979 QRGIVG--LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 1036
Query: 326 -GSSG--DALGKALASIYSPDHSSNNFSSSPSTP--VGSPQGLAGTS--QWPR--AGAPG 376
GS G G+ A+ D +P P GSP G AG + Q R AGA G
Sbjct: 1037 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP-GPAGPTGKQGDRGEAGAQG 1095
Query: 377 ALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALAS--GFTGPMS 434
+ PS G G+Q D+ G AG+ PG L GFTG
Sbjct: 1096 PMGPSGPAGARGIQGPQGPRGDK----------GEAGE-----PGERGLKGHRGFTGLQG 1140
Query: 435 LGG 437
L G
Sbjct: 1141 LPG 1143
Score = 47.8 bits (112), Expect = 3e-05
Identities = 79/303 (26%), Positives = 104/303 (34%), Gaps = 38/303 (12%)
Query: 96 PGLGGKSGERGAYASFGRD--AGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSY 153
PG GK G +GA G AG GL GE PG PSG +G P
Sbjct: 920 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG--EPGDDGPSGAEGP----PGP 973
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKT--PSSTYP 211
G + +R G + ++ + PGLP P G P P T P
Sbjct: 974 QGLAGQR---GIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGP 1030
Query: 212 APFYVADGSLHPSAELWSPPGQAGFGPMLG--GGSSPLPLPPGSGPVGSSGSSSTFGGLH 269
A +GS P A+ PPG+ G + G G + + P GP GS G + G
Sbjct: 1031 AGEPGREGS--PGAD--GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1086
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSG 329
G Q + P+ + P G P G L G RG T
Sbjct: 1087 DRGEAGAQ---GPMGPSGPAGARGIQGPQGPRGDKGEAGEP--GERGLKGHRGFTG---- 1137
Query: 330 DALGKALASIYSPDHSSNNFSSS----PSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGG 385
L + P S + +S PS P G P + + + G PG + P G
Sbjct: 1138 ------LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRG 1191
Query: 386 LHG 388
G
Sbjct: 1192 RSG 1194
Score = 46.2 bits (108), Expect = 9e-05
Identities = 104/408 (25%), Positives = 131/408 (32%), Gaps = 112/408 (27%)
Query: 96 PGLGGKSGERGAYASFGR--DAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSY 153
PGL G G RG G +AG G+ GE SPGP+ P G+ G +
Sbjct: 281 PGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG--SPGPMGPRGLPG-ERGRTGP 337
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
+G++ R DG QP P G P V P G P AK
Sbjct: 338 AGAAGARGNDG----QPG-----PAGPPGPVGPAG-----GPGFPGAPGAK--------- 374
Query: 214 FYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGS-GPVGSSGSSSTFGGLHQHE 272
G P+ GP G P PGS GP G+SG+ T G
Sbjct: 375 -----GEAGPT---------GARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG------ 414
Query: 273 RMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDAL 332
+ GA+ + G P + PG P GA LG +G T G G A
Sbjct: 415 -----IPGAKGSAGAPGIAGAPGFPG------PRGPPGPQGATGPLGPKGQT-GEPGIAG 462
Query: 333 GKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSK 392
K P+ P G+P + G PG + P G G
Sbjct: 463 FKG--------EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERG---- 510
Query: 393 IEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRH--AGLVG--GSHP 448
A G G PG LA GP G +GL G G++
Sbjct: 511 ---------------APGNRG-----FPGQDGLA----GPKGAPGERGPSGLAGPKGANG 546
Query: 449 EDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASE 496
+ G G P PG RP D+ G+ G + A E
Sbjct: 547 DPGRPGE----------PGLPGARGLTGRPGDA-GPQGKVGPSGAPGE 583
Score = 37.4 bits (85), Expect = 0.044
Identities = 68/252 (26%), Positives = 80/252 (31%), Gaps = 67/252 (26%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLS--GELAL----------NSPGPLSPSGM 143
PGL G +GE G S G D G AG GE SPGP P+G
Sbjct: 1025 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1084
Query: 144 KGT-----SQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPG------------LPSSVYP 186
+G +Q SG + R G + K PG L P
Sbjct: 1085 QGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1144
Query: 187 PSSGEDYGRDATAYPSAKT--PSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGS 244
P D G A PS P P+ A+G P PPG G G
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG----PPGPRGRSGETGPAG 1200
Query: 245 SP-LPLPPGS-GPVGSSGSSSTF----------------------GGLHQHERMGYQLHG 280
P P PPG GP G S F GGL QH+
Sbjct: 1201 PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHD-------- 1252
Query: 281 AEVNGGLPSASS 292
AEV+ L S ++
Sbjct: 1253 AEVDATLKSLNN 1264
Score = 33.5 bits (75), Expect = 0.63
Identities = 46/176 (26%), Positives = 57/176 (32%), Gaps = 27/176 (15%)
Query: 33 GKGRPASLAGAQ--FGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSS 90
GK AGAQ G SG +G+ G D G + H +
Sbjct: 1083 GKQGDRGEAGAQGPMGPSG-----PAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1137
Query: 91 STFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYY 150
L PG G SG++GA G G G + A PGP+ P G +G
Sbjct: 1138 LQGL-PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGR---- 1192
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTP 206
SG + G+ PG P PP G D A P K P
Sbjct: 1193 ---SGETGPAGPPGN------------PGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 57.8 bits (138), Expect = 3e-08
Identities = 122/459 (26%), Positives = 143/459 (31%), Gaps = 103/459 (22%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGF-----------LSGELAL-NSPGPLSPSGM 143
PG GGK G++G G VG + GF L G L +PG P G
Sbjct: 605 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA 664
Query: 144 KGT-----SQYYPSYSGSSRRRAADGSLDTQPKKVR-----KVPPGLPSSVYPPSSGEDY 193
G +Q P G R A G PK R K P G P G+D
Sbjct: 665 SGPAGPPGAQGPPGLQGMPGERGAAGI--AGPKGDRGDVGEKGPEGAP--------GKDG 714
Query: 194 GRDATAYPSAKTPSSTY----------PAPFYVADGSLHPSAELWSPPGQAGFGPMLGGG 243
GR T P+ PA A G+ E PPG AGF G
Sbjct: 715 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGET-GPPGPAGFAGPPGAD 773
Query: 244 SSP--------------LPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPS 289
P P GP G+ G G G Q G G P
Sbjct: 774 GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ--GPPGATGFPG 831
Query: 290 ASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTA--GSSGDALGKALASIYSPDHSSN 347
A+ PG+ P SG D G+RG + G +G+ + A P
Sbjct: 832 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG--PPGEKGE 889
Query: 348 NFSSSPSTPVG--SPQGLAG-------TSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLD 398
PS G PQGLAG Q G PG PS + G G
Sbjct: 890 PGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG---------- 939
Query: 399 EAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHP--EDGLAGST 456
A G +GD P G TGP GR G G P DG AG
Sbjct: 940 ---------APGASGDRG---PPGPVGPPGLTGPAGEPGRE-GSPGADGPPGRDGAAGVK 986
Query: 457 SLMHNHAAL-----PSQPGTLPDLSRPPDSYSGLGRAGA 490
A+ P PG+ P + P G AGA
Sbjct: 987 GDRGETGAVGAPGAPGPPGS-PGPAGPTGKQGDRGEAGA 1024
Score = 52.4 bits (124), Expect = 1e-06
Identities = 95/376 (25%), Positives = 122/376 (32%), Gaps = 57/376 (15%)
Query: 29 PVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSL 88
P G+ P G + G G P G+ GS + +S +P G + +
Sbjct: 302 PGAKGEAGPTGARGPE-GAQGPRGEP--GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 358
Query: 89 SSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQ 148
+ + PG G G +GA G G AGF + PGP P G
Sbjct: 359 AGAPGF-PGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA----- 412
Query: 149 YYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKT--- 205
P +G +R A G +P V P G P P + G+D A P
Sbjct: 413 --PGPAGEEGKRGARG----EPGGVG--PIGPPGERGAPGNRGFPGQDGLAGPKGAPGER 464
Query: 206 -------PSSTYPAPFYVADGSLHPSAELWSPPGQAG----FGPMLGGGSSPLPLPPGSG 254
P P + L + L PG AG GP G P PP G
Sbjct: 465 GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP--G 522
Query: 255 PVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGA 314
P G+ G G G G GLP A PG G + PP G
Sbjct: 523 PQGARGQPGVMGFPGPKGANGEP--GKAGEKGLPGAPGLRGLPGKD-GETGAAGPP--GP 577
Query: 315 DSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSP--QGLAGTSQWPRA 372
G RG G+ G + + L P G P QG+ G A
Sbjct: 578 AGPAGERG-EQGAPGPSGFQGLPG-----------PPGPPGEGGKPGDQGVPG-----EA 620
Query: 373 GAPGALSPSYDGGLHG 388
GAPG + P + G G
Sbjct: 621 GAPGLVGPRGERGFPG 636
Score = 52.4 bits (124), Expect = 1e-06
Identities = 103/363 (28%), Positives = 121/363 (33%), Gaps = 61/363 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELA----LNSPGPLSPSGMKGTSQYYP 151
PG G++G G A F G G A GE +PGP PSG G Q
Sbjct: 752 PGERGETGPPGP-AGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP-QGPT 809
Query: 152 SYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP 211
+G R A G PG V PP S + G PS K
Sbjct: 810 GVTGPKGARGAQGPPGATGF------PGAAGRVGPPGSNGNPGPPGPPGPSGK------- 856
Query: 212 APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPL--PPGSGPVGSSGSSSTFGGLH 269
DG + PPG+AG + G P P GP G+ G G
Sbjct: 857 ------DGPKGARGDS-GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAG 909
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPG--ATYGGVSSHTPPVS-GADSLLGSRGTTA- 325
Q +G L G G P S PG G PP G L G G
Sbjct: 910 QRGIVG--LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 967
Query: 326 -GSSG--DALGKALASIYSPDHSSNNFSSSPSTP--VGSPQGLAGTS--QWPR--AGAPG 376
GS G G+ A+ D +P P GSP G AG + Q R AGA G
Sbjct: 968 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP-GPAGPTGKQGDRGEAGAQG 1026
Query: 377 ALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALAS--GFTGPMS 434
+ PS G G+Q D+ G AG+ PG L GFTG
Sbjct: 1027 PMGPSGPAGARGIQGPQGPRGDK----------GEAGE-----PGERGLKGHRGFTGLQG 1071
Query: 435 LGG 437
L G
Sbjct: 1072 LPG 1074
Score = 47.8 bits (112), Expect = 3e-05
Identities = 79/303 (26%), Positives = 104/303 (34%), Gaps = 38/303 (12%)
Query: 96 PGLGGKSGERGAYASFGRD--AGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSY 153
PG GK G +GA G AG GL GE PG PSG +G P
Sbjct: 851 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG--EPGDDGPSGAEGP----PGP 904
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKT--PSSTYP 211
G + +R G + ++ + PGLP P G P P T P
Sbjct: 905 QGLAGQR---GIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGP 961
Query: 212 APFYVADGSLHPSAELWSPPGQAGFGPMLG--GGSSPLPLPPGSGPVGSSGSSSTFGGLH 269
A +GS P A+ PPG+ G + G G + + P GP GS G + G
Sbjct: 962 AGEPGREGS--PGAD--GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1017
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSG 329
G Q + P+ + P G P G L G RG T
Sbjct: 1018 DRGEAGAQ---GPMGPSGPAGARGIQGPQGPRGDKGEAGEP--GERGLKGHRGFTG---- 1068
Query: 330 DALGKALASIYSPDHSSNNFSSS----PSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGG 385
L + P S + +S PS P G P + + + G PG + P G
Sbjct: 1069 ------LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRG 1122
Query: 386 LHG 388
G
Sbjct: 1123 RSG 1125
Score = 46.2 bits (108), Expect = 9e-05
Identities = 104/408 (25%), Positives = 131/408 (32%), Gaps = 112/408 (27%)
Query: 96 PGLGGKSGERGAYASFGR--DAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSY 153
PGL G G RG G +AG G+ GE SPGP+ P G+ G +
Sbjct: 212 PGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG--SPGPMGPRGLPG-ERGRTGP 268
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
+G++ R DG QP P G P V P G P AK
Sbjct: 269 AGAAGARGNDG----QPG-----PAGPPGPVGPAG-----GPGFPGAPGAK--------- 305
Query: 214 FYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGS-GPVGSSGSSSTFGGLHQHE 272
G P+ GP G P PGS GP G+SG+ T G
Sbjct: 306 -----GEAGPT---------GARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG------ 345
Query: 273 RMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDAL 332
+ GA+ + G P + PG P GA LG +G T G G A
Sbjct: 346 -----IPGAKGSAGAPGIAGAPGFPG------PRGPPGPQGATGPLGPKGQT-GEPGIAG 393
Query: 333 GKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSK 392
K P+ P G+P + G PG + P G G
Sbjct: 394 FKG--------EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERG---- 441
Query: 393 IEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRH--AGLVG--GSHP 448
A G G PG LA GP G +GL G G++
Sbjct: 442 ---------------APGNRG-----FPGQDGLA----GPKGAPGERGPSGLAGPKGANG 477
Query: 449 EDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASE 496
+ G G P PG RP D+ G+ G + A E
Sbjct: 478 DPGRPGE----------PGLPGARGLTGRPGDA-GPQGKVGPSGAPGE 514
Score = 37.4 bits (85), Expect = 0.044
Identities = 68/252 (26%), Positives = 80/252 (31%), Gaps = 67/252 (26%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLS--GELAL----------NSPGPLSPSGM 143
PGL G +GE G S G D G AG GE SPGP P+G
Sbjct: 956 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1015
Query: 144 KGT-----SQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPG------------LPSSVYP 186
+G +Q SG + R G + K PG L P
Sbjct: 1016 QGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1075
Query: 187 PSSGEDYGRDATAYPSAKT--PSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGS 244
P D G A PS P P+ A+G P PPG G G
Sbjct: 1076 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG----PPGPRGRSGETGPAG 1131
Query: 245 SP-LPLPPGS-GPVGSSGSSSTF----------------------GGLHQHERMGYQLHG 280
P P PPG GP G S F GGL QH+
Sbjct: 1132 PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHD-------- 1183
Query: 281 AEVNGGLPSASS 292
AEV+ L S ++
Sbjct: 1184 AEVDATLKSLNN 1195
Score = 33.5 bits (75), Expect = 0.63
Identities = 46/176 (26%), Positives = 57/176 (32%), Gaps = 27/176 (15%)
Query: 33 GKGRPASLAGAQ--FGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSS 90
GK AGAQ G SG +G+ G D G + H +
Sbjct: 1014 GKQGDRGEAGAQGPMGPSG-----PAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1068
Query: 91 STFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYY 150
L PG G SG++GA G G G + A PGP+ P G +G
Sbjct: 1069 LQGL-PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGR---- 1123
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTP 206
SG + G+ PG P PP G D A P K P
Sbjct: 1124 ---SGETGPAGPPGN------------PGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 57.4 bits (137), Expect = 4e-08
Identities = 123/484 (25%), Positives = 154/484 (31%), Gaps = 60/484 (12%)
Query: 34 KGRPASLAGAQFGGS-GLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSST 92
KGRP G G+ +P + SR FS + S L S
Sbjct: 149 KGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQV 208
Query: 93 FLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTS--QYY 150
L PG G G RG G+ G G G PGP+ P G +G
Sbjct: 209 GLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPG------EPGDPGPMGPIGSRGPEGPPGK 262
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAK--TPSS 208
P G R G + + PG P P G P + P S
Sbjct: 263 PGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGL---PGLKGHRGHKGLEGPKGEVGAPGS 319
Query: 209 TYPAPFYVADGSLHPSAELWSPPGQAGFGPMLG---GGSSPLPLPPG-SGPVGSSGSSST 264
A G++ P P + GP G+ +P PG GP+G GSS
Sbjct: 320 KGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGF 379
Query: 265 FGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTT 324
G G GA G P + P G S P G D G++G T
Sbjct: 380 PGNPGMKGEAGPT--GARGPEG-PQGQRGETGPPGPVG--SPGLPGAIGTDGTPGAKGPT 434
Query: 325 A--GSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRA-GAPGALSPS 381
G+SG P + S P G PQG+ G P G G P
Sbjct: 435 GSPGTSG-----------PPGSAGPPGSPGPQGSTG-PQGIRGQPGDPGVPGFKGEAGPK 482
Query: 382 YDGGLHGLQSKIEDHLDEAIHVLRSH--AVGTAGDM-HTLLPGHGAL--ASGFTGPMSLG 436
+ G HG+Q I +E R VG G + PG+ + G GP
Sbjct: 483 GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQ 542
Query: 437 GRHAGLVGGSHP-----------EDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGL 485
G G VG S P E GL G+ L N + G L L P +
Sbjct: 543 GER-GPVGSSGPKGSQGDPGRPGEPGLPGARGLTGN-PGVQGPEGKLGPLGAPGED---- 596
Query: 486 GRAG 489
GR G
Sbjct: 597 GRPG 600
Score = 47.4 bits (111), Expect = 4e-05
Identities = 91/368 (24%), Positives = 112/368 (30%), Gaps = 56/368 (15%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGF---LSGELALNSPGPLSPSGMKGTSQYY-- 150
PGL G GERG + G GG+ + G + A PGPL P G G +
Sbjct: 758 PGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE 817
Query: 151 ---------PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYP 201
P G+ R +G + P G P P G + P
Sbjct: 818 PGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGP 877
Query: 202 SAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLG--GGSSPLPLPPGSGPVGSS 259
S P V L PPG GF G G P P +GP+G
Sbjct: 878 QGLAGSPGPHGPNGVP--GLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEP 935
Query: 260 GSS---STFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADS 316
G G H R+ G G P PG G PP G
Sbjct: 936 GKEGPPGLRGDPGSHGRV-----GDRGPAGPPGGPGDKGDPGED-GQPGPDGPP--GPAG 987
Query: 317 LLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGT--SQWPRAGA 374
G RG G G + + + P + + +T P G G S P G
Sbjct: 988 TTGQRG-IVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGP-VGE 1045
Query: 375 PGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGAL-----ASGF 429
PG P+ + G G R AVG GD PG L A G
Sbjct: 1046 PGPEGPAGNDGTPG----------------RDGAVGERGDRGD--PGPAGLPGSQGAPGT 1087
Query: 430 TGPMSLGG 437
GP+ G
Sbjct: 1088 PGPVGAPG 1095
Score = 46.6 bits (109), Expect = 7e-05
Identities = 116/472 (24%), Positives = 146/472 (30%), Gaps = 101/472 (21%)
Query: 57 GSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAG 116
G GS S DP R G + PG+ G G+ G + G D
Sbjct: 546 GPVGSSGPKGSQGDPGRPGEPGLPGARGLTG-------NPGVQGPEGKLGPLGAPGEDGR 598
Query: 117 VGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKV 176
G G ++ PGP SG G P +G++ G+ P K +V
Sbjct: 599 PGPPGSIGIRGQPGSMGLPGPKGSSGDPGK----PGEAGNAGVPGQRGA----PGKDGEV 650
Query: 177 PPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP--------------FYVADGSLH 222
P P V PP + G P+ P P A G L
Sbjct: 651 GPSGP--VGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLG 708
Query: 223 PSAELWSP-----------PGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQH 271
P E +P PG+ G + GG P GP GS G S T G
Sbjct: 709 PRGERGNPGERGEPGITGLPGEKG----MAGGHGP------DGPKGSPGPSGTPGDT--- 755
Query: 272 ERMGYQLHGAEVNGGLPSASSFSSAPG--ATYGGV----SSHTPPVSGADSLLGSRGT-- 323
G G+P + PG GG+ + T GA L G G
Sbjct: 756 --------GPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPG 807
Query: 324 TAGSSGDALGKALASIYSPDHSSNNFSS----SPSTPVG-----SPQGLAGTSQWPRAGA 374
AG +G+ + P S N S P+ VG P G G P G
Sbjct: 808 PAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEP--GE 865
Query: 375 PGALSPSYDGGLHGLQSKIEDHLDEAIHVLRS--------HAVGTAGDMHTLLPGHGALA 426
PG + G GL H + L+ A G G + P A A
Sbjct: 866 PGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGA 925
Query: 427 SGFTGPMSLGGRHA--GLVG--GSHPEDGLAGSTSLMHNHAALPSQPGTLPD 474
G GP+ G+ GL G GSH G G A P PG D
Sbjct: 926 PGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGP-------AGPPGGPGDKGD 970
Score = 29.6 bits (65), Expect = 9.2
Identities = 44/171 (25%), Positives = 56/171 (32%), Gaps = 34/171 (19%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PG G G +GA + G G Q G S GP+ P G G + P G
Sbjct: 1073 PGPAGLPGSQGAPGTPGPVGAPGDAGQRG------DPGSRGPIGPPGRAG-KRGLPGPQG 1125
Query: 156 SSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFY 215
+ G + +K + GL PP P+ + S+ P PF
Sbjct: 1126 PRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPG------------PNGEQGSAGIPGPFG 1173
Query: 216 VADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFG 266
PPG G G +P PL P GP G GS G
Sbjct: 1174 PR-----------GPPGPVG---PSGKEGNPGPLGP-IGPPGVRGSVGEAG 1209
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 56.6 bits (135), Expect = 7e-08
Identities = 85/313 (27%), Positives = 107/313 (34%), Gaps = 44/313 (14%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PGL G G +G G D VG Q G A GP P G KG G
Sbjct: 390 PGLPGPPGPKG---EAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGE-------PG 439
Query: 156 SSRRRAADGSLDTQPKKVRKV----PPGLPSSVYPPSS-------GE-----DYGRDATA 199
+G+++ +++R + PPGLP + PP + GE G D
Sbjct: 440 KGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEK 499
Query: 200 YPSAKTPSSTYPAPFYV--ADGSLHPSAELWSP--PGQAGFGPMLGGGSSPLP-LPPGSG 254
P K P P DG E P PG+ G G SP+P LP G
Sbjct: 500 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEG 559
Query: 255 PVGSSGSSSTFG-----GLHQHE-RMGYQ-LHGAEVNGGLPSASSFSSAPGATYGGVSSH 307
P G G G GL + G+Q G GLP AS PG
Sbjct: 560 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 619
Query: 308 TPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTS 367
P +G GS+G G +G L ++ P N P+G G
Sbjct: 620 VPGPAGPKGERGSKG-DPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQ 678
Query: 368 QWPRAGAPGALSP 380
GAPG +P
Sbjct: 679 -----GAPGLDAP 686
Score = 38.5 bits (88), Expect = 0.020
Identities = 76/319 (23%), Positives = 101/319 (31%), Gaps = 46/319 (14%)
Query: 93 FLGP-GLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYP 151
F GP G G G++GA GR VG G+ L+ GP P G GT + +P
Sbjct: 123 FQGPTGRPGLPGDKGAIGMPGR---VGS-------PGDAGLSIIGPRGPPGQPGT-RGFP 171
Query: 152 SYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSS----GEDYGRDA-TAYPSAKTP 206
+ G G + PPG P GE R+ ++ P+A
Sbjct: 172 GFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRS 231
Query: 207 SSTYPAPFYVADGSL----------------HPSAELWSPPGQAGFGPMLGGGSSPLPLP 250
S S+ A + PPG G G S PL P
Sbjct: 232 SQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPG----PPGPSGPLGHP 287
Query: 251 PGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPP 310
GP+G G G GY HG + G+P A GA V+
Sbjct: 288 GLPGPMGPPGLPGPPGPKGDPGIQGY--HGRKGERGMPGMPGKHGAKGAPGIAVAG---- 341
Query: 311 VSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAG-TSQW 369
+ G + G++G L L + N+ P P GL G
Sbjct: 342 MKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEP--GPPGLPGPPGPK 399
Query: 370 PRAGAPGALSPSYDGGLHG 388
AG G + P G G
Sbjct: 400 GEAGVDGQVGPPGQPGDKG 418
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 55.8 bits (133), Expect = 1e-07
Identities = 123/571 (21%), Positives = 191/571 (33%), Gaps = 98/571 (17%)
Query: 31 TNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSE-GTHFTESHSSLS 89
T+ + A+L+ A SG+ + S+ G +++F S T S T SHSS
Sbjct: 4085 TSPRSPDATLSPATTTSSGVSEESSTSHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQG 4144
Query: 90 SS-TFLGPGLGGKSGERGAYASFGRDAG------------VGGLTQAGF----LSGELAL 132
S+ L PG S +F G GL +A +G L
Sbjct: 4145 STEATLSPGSTTASSLGQQSTTFHSSPGDTETTLLPDDTITSGLVEASTPTHSSTGSLHT 4204
Query: 133 N-SPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSV---YPPS 188
+P + +G++ S + S+ SS + S P +V PSS + +
Sbjct: 4205 TLTPASSTSTGLQEESTTFQSWPSSSDTTPSPPSTTAVPVEVSTTYHSRPSSTPTTHFSA 4264
Query: 189 SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSP-PGQAGFGPMLGGGSSPL 247
S GR + +P +T A F P+ S G+ P+ G +
Sbjct: 4265 SSTTLGRSEESTTVHSSPGATGTALF--------PTRSATSVLVGEPTTSPISSGSTETT 4316
Query: 248 PLPPGSGPVGSSGSSSTF------------------GGLHQHERMGYQLHGAEVNGGLPS 289
LP + G S S+TF G+ + + G+ PS
Sbjct: 4317 ALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRPGSMHTTAFPS 4376
Query: 290 ASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSG-------------------- 329
+++ PG + +SH+ P S D+ L TTA S G
Sbjct: 4377 STTM---PGVSQESTASHSSPGS-TDTTLSPGSTTASSLGPESTTFHSSPGSTETTLLPD 4432
Query: 330 DALGKALASIYSPDHSSNNFSSSPSTPVGSP--QGLAGTSQ-WPRAGAPGALSPSYDGGL 386
+ L +P HSS + +P GS QG + T Q WP + P+
Sbjct: 4433 NTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPNSKDTTPAPPTTTSAF 4492
Query: 387 HGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGS 446
L + S + T G H + + T P +GLV S
Sbjct: 4493 VELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSPARSTTSGLVEES 4552
Query: 447 HPEDGLAGSTSLMH----------------NHAA----LPSQPGTLPDLSRPPDSYSGLG 486
GST MH +H++ + S P T L P SY
Sbjct: 4553 TTYHSSPGSTQTMHFPESNTTSGRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSSP 4612
Query: 487 RAGATAAASEIKREEKEDEENTSAADHSEEE 517
+ AT + EE+T++ HS ++
Sbjct: 4613 GSTATTHFPDSSTTSGRSEESTAS--HSSQD 4641
Score = 53.5 bits (127), Expect = 6e-07
Identities = 121/571 (21%), Positives = 189/571 (33%), Gaps = 98/571 (17%)
Query: 31 TNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSE-GTHFTESHSSLS 89
T+ + A+L+ A SG+ + S+ G +++F S T S T SHSS
Sbjct: 3002 TSPRSPDATLSPATTTSSGVSEESSTSHSQPGSTHTTAFPDSTTTSGLSQEPTASHSSQG 3061
Query: 90 SS-TFLGPGLGGKSGERGAYASFGRDAG------------VGGLTQAGF----LSGELAL 132
S+ L PG S +F G GL +A +G L
Sbjct: 3062 STEATLSPGSTTASSLGQQSTTFHSSPGDTETTLLPDDTITSGLVEASTPTHSSTGSLHT 3121
Query: 133 N-SPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSV---YPPS 188
+P + +G++ S + S+ SS + P +V PSS + +
Sbjct: 3122 TLTPASSTSAGLQEESTTFQSWPSSSDTTPSPPGTTAAPVEVSTTYHSRPSSTPTTHFSA 3181
Query: 189 SGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSP-PGQAGFGPMLGGGSSPL 247
S GR + +P +T A F P+ S G+ P+ G +
Sbjct: 3182 SSTTLGRSEESTTVHSSPGATGTALF--------PTRSATSVLVGEPTTSPISSGSTETT 3233
Query: 248 PLPPGSGPVGSSGSSSTF------------------GGLHQHERMGYQLHGAEVNGGLPS 289
LP + G S S+TF G+ + + G+ P
Sbjct: 3234 ALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRPGSTHTTAFPG 3293
Query: 290 ASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSG-------------------- 329
+++ PG + +SH+ P S D+ L TTA S G
Sbjct: 3294 STTM---PGVSQESTASHSSPGS-TDTTLSPGSTTASSLGPESTTFHSGPGSTETTLLPD 3349
Query: 330 DALGKALASIYSPDHSSNNFSSSPSTPVGSP--QGLAGTSQ-WPRAGAPGALSPSYDGGL 386
+ L +P HSS + +P GS QG + T Q WP + P+
Sbjct: 3350 NTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPNSKDTTPAPPTTTSAF 3409
Query: 387 HGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGS 446
L + S + T G H + + T P +GLV S
Sbjct: 3410 VELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSPARSTTSGLVEES 3469
Query: 447 HPEDGLAGSTSLMH----------------NHAA----LPSQPGTLPDLSRPPDSYSGLG 486
GST MH +H++ + S P T L P SY
Sbjct: 3470 TTYHSSPGSTQTMHFPESDTTSGRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSSP 3529
Query: 487 RAGATAAASEIKREEKEDEENTSAADHSEEE 517
+ AT + EE+T++ HS ++
Sbjct: 3530 GSTATTHFPDSSTTSGRSEESTAS--HSSQD 3558
Score = 47.0 bits (110), Expect = 6e-05
Identities = 117/554 (21%), Positives = 179/554 (32%), Gaps = 90/554 (16%)
Query: 26 FPLPVTNGKGRPASLA----GAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFS-EGTH 80
F P T G P+S+ A+ SGL + ++ G + F S T S G
Sbjct: 797 FVEPSTTSHGSPSSIPTTHISARSTTSGLVEESTTYHSSPGSTQTMHFPESDTTSGRGEE 856
Query: 81 FTESHSSLS-----------------SSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQA 123
T SHSS + +S PG + + + GR +
Sbjct: 857 STTSHSSTTHTISSAPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSS 916
Query: 124 GFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVP----PG 179
+G + L P + S + G S P SGS A GS T R P
Sbjct: 917 QDATGTIVL--PARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGLSERSTTFHSSPR 974
Query: 180 LPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVA--------------------DG 219
P++ P+S G + S P ST+ F + D
Sbjct: 975 SPATTLSPASTTSSGVSEESTTSRSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDT 1034
Query: 220 SLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLH 279
+L P++ S P Q GS+ L PGS S G ST +
Sbjct: 1035 TLLPASTTTSGPSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSNPGSTHTTLFP 1094
Query: 280 GAEVNGGLPSAS----SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKA 335
+ + G+ AS S + +P T SS +P + G + + + ++ A
Sbjct: 1095 DSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTA 1154
Query: 336 LASIYSPDHSSNNFSSSP-STPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIE 394
A P S + SP STP T+ +P + H +S I
Sbjct: 1155 TA----PVEESTTYHRSPGSTP---------TTHFPASSTTSG---------HSEKSTI- 1191
Query: 395 DHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAG 454
H + T H+ G G T +S G + GS GL+
Sbjct: 1192 ------FHSSPDASGTTPSSAHSTTSGRG---ESTTSRISPGSTEITTLPGSTTTPGLSE 1242
Query: 455 STSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAADHS 514
+++ ++ P P T LS + G+G T+ + +T+ S
Sbjct: 1243 ASTTFYSS---PRSPTT--TLSPASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGLS 1297
Query: 515 EEEKKELKAPRART 528
EE + R T
Sbjct: 1298 EESTTVYSSSRGST 1311
Score = 46.2 bits (108), Expect = 9e-05
Identities = 93/360 (25%), Positives = 128/360 (35%), Gaps = 25/360 (6%)
Query: 13 DKELSDLLDFSMMFP-LPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDP 71
D S L + S FP P + G PA+L A G SSGS G+ S +
Sbjct: 2430 DSTTSGLTEESTAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGT-TLSPARSTT 2488
Query: 72 SRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELA 131
S E T S SS ++T G E+ + L+ A S ++
Sbjct: 2489 SGLVGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVS 2548
Query: 132 LNSPGPLSPSGMKGTSQYYPSYS--GSSRR----RAADGSLDTQPKKVRKVPPGLPSSVY 185
S S G T+ + S + G SR ++ GS DT G PS
Sbjct: 2549 EESSTSHSQPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSG-PSQES 2607
Query: 186 PPSSGEDYGRDATAYPSAKTPSS--TYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGG 243
S D P + T S F+ + GS H + P G +
Sbjct: 2608 TTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTL---FPDSTTSSG--IVEA 2662
Query: 244 SSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAP---GAT 300
S+ + GS S +SST GL Q E +Q H A + PS S ++AP T
Sbjct: 2663 STRVHSSTGSPRTTLSPASSTSPGL-QGESTTFQTHPASTH-TTPSPPSTATAPVEESTT 2720
Query: 301 YGGVSSHTP----PVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTP 356
Y TP P S S + T SS DA G +S +S ++S +P
Sbjct: 2721 YHRSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISP 2780
Score = 42.4 bits (98), Expect = 0.001
Identities = 113/522 (21%), Positives = 174/522 (33%), Gaps = 68/522 (13%)
Query: 39 SLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGT--HFTESHSSLSSS-TFLG 95
+L+ A SG+ + ++ G +++F PS T G T SHSS S+ T L
Sbjct: 4344 TLSPASTTSSGVSEESTTSHSRPGSMHTTAF-PSSTTMPGVSQESTASHSSPGSTDTTLS 4402
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLT---QAGFLSGELALNSPGPLSPSGMKGTSQYYPS 152
PG S +F G T SG L ++P S G+ S
Sbjct: 4403 PGSTTASSLGPESTTFHSSPGSTETTLLPDNTTASGLLEASTPVHSST----GSPHTTLS 4458
Query: 153 YSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPA 212
+GS+ R+ + + P P PP++ + +T S +PSST
Sbjct: 4459 PAGSTTRQGESTTFQSWPNSKDTTPA-------PPTTTSAFVELSTT--SHGSPSSTPTT 4509
Query: 213 PFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHE 272
F + +L S E S+ + P + S + ST GL +
Sbjct: 4510 HFSASSTTLGRSEE-----------------STTVHSSPVATATTPSPARSTTSGLVEES 4552
Query: 273 RMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDAL 332
+ G+ P +++ S + SS T +S A S + S +
Sbjct: 4553 TTYHSSPGSTQTMHFPESNTTSGRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSSP 4612
Query: 333 GKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGAL------SPSYDGGL 386
G A+ + PD S+ + S ST S Q GT P L SP G +
Sbjct: 4613 GST-ATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSM 4671
Query: 387 H-----------GLQSKIEDHLDEAIHVLRSH---AVGTAGDMHTLLPGHGALASGFTGP 432
GL K +H + T G H + + T P
Sbjct: 4672 ETTALPGSTTTPGLSEKSTTFHSSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTP 4731
Query: 433 MSLGGRHAGLVGGSHPEDGLAGSTSLMH----------NHAALPSQPGTLPDLSRPPDSY 482
+GLV S GST MH + + S T +S PP +
Sbjct: 4732 SPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTT 4791
Query: 483 SGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAP 524
S L + +S E+++ + SEE +P
Sbjct: 4792 SALVEEPTSYHSSPGSIATTHFPESSTTSGRSEESTASHSSP 4833
Score = 42.0 bits (97), Expect = 0.002
Identities = 89/372 (23%), Positives = 136/372 (36%), Gaps = 52/372 (13%)
Query: 29 PVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSL 88
P+T+ +L G+ +GL ++ S+ + S + P+RT S G S S
Sbjct: 256 PITSASMETTALPGSTTT-AGLSEK-STTFYSSPRSPDRTLSPARTTSSGV----SEKST 309
Query: 89 SSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALN-----SPGPLSPSGM 143
+S + GP +F + G++Q S + + SPG +PS +
Sbjct: 310 TSHSRPGPT---------HTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPGTTTPSSL 360
Query: 144 KGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVP----PGLPSSVYPPSSGEDYGRDATA 199
S + S G ++ + T P G P + PSS + + T
Sbjct: 361 GPESTTFHSSPGYTKTTRLPDNTTTSGLLEASTPVHSSTGSPHTTLSPSSSTTHEGEPTT 420
Query: 200 YPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGG----GSSPLPLPPGSGP 255
+ S + T PAP + S S P G S P S P
Sbjct: 421 FQSWPSSKDTSPAPSGTTSAFVKLSTTYHSSPSSTPTTHFSASSTTLGHSEESTPVHSSP 480
Query: 256 VGSS-----GSSSTFGGLHQHERMGY-QLHGAEVNGGLPSASSFS--SAPGATYGGVSSH 307
V ++ S+T G H E Y + G+ P +S+ S S AT+ G ++H
Sbjct: 481 VATATTPPPARSATSG--HVEESTAYHRSPGSTQTMHFPESSTTSGHSEESATFHGSTTH 538
Query: 308 ----TPPVSGA------DSLLGSRGTT-AGSSGDALGKALASIYSPDHSSNNFSSSPSTP 356
TP + A S LGS TT S G++ S HSS + ++ P
Sbjct: 539 TKSSTPSTTAALAHTSYHSSLGSTETTHFRDSSTISGRSEES--KASHSSPDAMATTVLP 596
Query: 357 VGS-PQGLAGTS 367
GS P L G S
Sbjct: 597 AGSTPSVLVGDS 608
Score = 40.4 bits (93), Expect = 0.005
Identities = 95/489 (19%), Positives = 163/489 (33%), Gaps = 25/489 (5%)
Query: 60 GSGDQSSSSFDPS-RTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVG 118
G G++S++S + T S T + +S PG + + + GR
Sbjct: 3492 GRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEEST 3551
Query: 119 GLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVP- 177
+ +G + L P + S + G S P SGS A GS T +
Sbjct: 3552 ASHSSQDATGTIVL--PARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGLSEKSTTF 3609
Query: 178 ---PGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQA 234
P P++ P+S G + S P ST+ F D + P S +
Sbjct: 3610 HSSPRSPATTLSPASTTSSGVSEESTTSHSRPGSTHTTAF--PDSTTTPGLSRHSTTSHS 3667
Query: 235 GFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFS 294
G + LP + GSS S+T +++F
Sbjct: 3668 S-----PGSTDTTLLPASTTTSGSSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFH 3722
Query: 295 SAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPS 354
S+PG+T+ + + SG ++ GS L A ++ S F + P+
Sbjct: 3723 SSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPA 3782
Query: 355 TPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRS--HAVGTA 412
+ +P + + SP H S E + S A GT
Sbjct: 3783 STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTT 3842
Query: 413 -GDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPS---Q 468
H+ G G T +S G + GS GL+ +++ ++ P+
Sbjct: 3843 PSSAHSTTSGRG---ESTTSRISPGSTEITTLPGSTTTPGLSEASTTFYSSPRSPTTTLS 3899
Query: 469 PGTLPDLSRPPDSYSGLGRAGAT--AAASEIKREEKEDEENTSAADHSEEEKKELKAPRA 526
P ++ L +S + + G+T + EE+T+ S + PR+
Sbjct: 3900 PASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGLSEESTTVYSSSPGSTETTVFPRS 3959
Query: 527 RTSPDEDED 535
T+ E+
Sbjct: 3960 TTTSVRREE 3968
Score = 39.7 bits (91), Expect = 0.009
Identities = 105/516 (20%), Positives = 166/516 (32%), Gaps = 75/516 (14%)
Query: 61 SGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGL 120
S S S + + S TH S S +S+ P S A F + G
Sbjct: 1930 SSTASGRSEESRTSHSSTTHTISSPPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGR 1989
Query: 121 TQAGFLS-------GELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKV 173
++ S G + L P + S + G S P SGS A GS T
Sbjct: 1990 SEESTASHSSQDATGTIVL--PARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGLSE 2047
Query: 174 RKVP----PGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVA------------ 217
+ P P++ P+S G + S P ST+ F +
Sbjct: 2048 KSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTT 2107
Query: 218 --------DGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLH 269
D +L P++ S P Q GS+ L PGS S G ST
Sbjct: 2108 SHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSS 2167
Query: 270 QHERMGYQLHGAEVNGGLPSAS----SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTA 325
+ + G+ AS S + +P T SS +P + G + + +
Sbjct: 2168 PGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPAST 2227
Query: 326 GSSGDALGKALASIYSPDHSSNNFSSSP-STPVGSPQGLAGTSQWPRAGAPGALSPSYDG 384
++ A A P S + SP STP T+ +P +
Sbjct: 2228 HTTPSPPSTATA----PVEESTTYHRSPGSTP---------TTHFPASSTTSG------- 2267
Query: 385 GLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVG 444
H +S I H + T H+ G G T +S G +
Sbjct: 2268 --HSEKSTI-------FHSSPDASGTTPSSAHSTTSGRG---ESTTSRISPGSTEITTLP 2315
Query: 445 GSHPEDGLAGSTSLMHNHAALPS---QPGTLPDLSRPPDSYSGLGRAGAT--AAASEIKR 499
GS GL+ +++ ++ P+ P ++ L +S + + G+T +
Sbjct: 2316 GSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSPASTT 2375
Query: 500 EEKEDEENTSAADHSEEEKKELKAPRARTSPDEDED 535
EE+T+ S + PR T+ E+
Sbjct: 2376 TPGLSEESTTVYSSSPGSTETTVFPRTPTTSVRGEE 2411
Score = 39.7 bits (91), Expect = 0.009
Identities = 110/558 (19%), Positives = 196/558 (35%), Gaps = 85/558 (15%)
Query: 21 DFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTH 80
D +++ T+G + ++ + + G + P S + S Q S++F S + T
Sbjct: 3673 DTTLLPASTTTSGSSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTL 3732
Query: 81 FTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSP 140
F +S +S SG A G T SP +
Sbjct: 3733 FPDSTTS--------------SGIVEASTRVHSSTGSPRTTL-----------SPASSTS 3767
Query: 141 SGMKGTSQYYPSYSGSSRRRAADGSLDTQPKK----VRKVPPGLPSSVYPPSS-GEDYGR 195
G++G S + ++ S+ + S T P + + P P++ +P SS +
Sbjct: 3768 PGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSE 3827
Query: 196 DATAYPSAKTPSSTYPAPFYVADGS--------LHP-SAELWSPPGQAGFGPMLGGGSSP 246
+T + S+ S T P+ + + P S E+ + PG P L S+
Sbjct: 3828 KSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGST-TTPGLSEASTT 3886
Query: 247 LPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASS-----------FSS 295
P S S +S T G+ + G+ + P++++ +SS
Sbjct: 3887 FYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGLSEESTTVYSS 3946
Query: 296 APGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSS--- 352
+PG+T V P S S+ TT S ++++ D +++ +
Sbjct: 3947 SPGSTETTVF----PRSTTTSVRREEPTTFHSRP---ASTHTTLFTEDSTTSGLTEESTA 3999
Query: 353 -PSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGT 411
P +P + GL T G PS G S + +
Sbjct: 4000 FPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTKLSPARSTTSGLVGESTPSRLSP 4059
Query: 412 AGDMHTLLPGHGALAS-------GFTGPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAA 464
+ T LPG S +T P S A L + G++ +S H
Sbjct: 4060 SSTETTTLPGSPTTPSLSEKSTTFYTSPRS---PDATLSPATTTSSGVSEESSTSH---- 4112
Query: 465 LPSQPGTLPDLSRPPD-SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKA 523
SQPG+ + P + SGL + T+ +S+ E +T+A+ ++ +
Sbjct: 4113 --SQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQGSTEATLSPGSTTASSLGQQ------S 4164
Query: 524 PRARTSPDEDEDDLLPPE 541
+SP + E LLP +
Sbjct: 4165 TTFHSSPGDTETTLLPDD 4182
Score = 38.1 bits (87), Expect = 0.026
Identities = 112/506 (22%), Positives = 169/506 (33%), Gaps = 67/506 (13%)
Query: 31 TNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSE-GTHFTESHSSLS 89
T+ + A+L+ A SG+ + S+ G +++F S T S+ T SHSS
Sbjct: 1445 TSPRSPDATLSPATTTSSGVSEESSTSHSQPGSTHTTAFPDSTTTSDLSQEPTTSHSSQG 1504
Query: 90 SS-TFLGPGLGGKSG---ERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKG 145
S+ L PG S + + S D L SG + ++P S +
Sbjct: 1505 STEATLSPGSTTASSLGQQSTTFHSSPGDTETTLLPDDTITSGLVEASTPTHSSTGSLHT 1564
Query: 146 TSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKT 205
T P+ S S+ + + + P P PP + +T Y S
Sbjct: 1565 TLT--PASSTSAGLQEESTTFQSWPSSSDTTPS-------PPGTTAAPVEVSTTYHSR-- 1613
Query: 206 PSSTYPAPFYVADGSLHPSAE---LWSPPGQAGFGPM-LGGGSSPLPLPPGSGPVGSSGS 261
PSST F + +L S E + S PG G +S L P + P+ SSGS
Sbjct: 1614 PSSTPTTHFSASSTTLGRSEESTTVHSSPGATGTALFPTRSATSVLVGEPTTSPI-SSGS 1672
Query: 262 SSTFGGLHQHERMGYQLHGAEVNGGLPSASS-FSSAPGATYGGVSSHTPPVSGADSLLGS 320
+ T L G+ GL S+ F S+P + +S P S S +
Sbjct: 1673 TETTA-----------LPGSTTTAGLSEKSTTFYSSPRSPDTTLS----PASTTSSGVSE 1717
Query: 321 RGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSP 380
TT+ S G + + P ++ S ST S G T+ P + +L P
Sbjct: 1718 ESTTSHSRP---GSTHTTAF-PGSTTMPGVSQESTASHSSPGSTDTTLSPGSTTASSLGP 1773
Query: 381 SYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHA 440
H + G T L ASG +
Sbjct: 1774 E----------------STTFH-------SSPGSTETTLLPDNTTASGL---LEASTPVH 1807
Query: 441 GLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKRE 500
G H AGST+ S P + + PP + S T+ S
Sbjct: 1808 SSTGSPHTTLSPAGSTTRQGESTTFQSWPSSKDTMPAPPTTTSAFVELSTTSHGSPSSTP 1867
Query: 501 EKEDEENTSAADHSEEEKKELKAPRA 526
+++ SEE +P A
Sbjct: 1868 TTHFSASSTTLGRSEESTTVHSSPVA 1893
Score = 38.1 bits (87), Expect = 0.026
Identities = 117/558 (20%), Positives = 172/558 (30%), Gaps = 55/558 (9%)
Query: 13 DKELSDLLDFSMMFP-LPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDP 71
D S L + S FP P + G PA+L A G SSGS G+ S +
Sbjct: 2904 DSTTSGLTEESTAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGT-TLSPARSTT 2962
Query: 72 SRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELA 131
S E T S SS ++T G E+ + L+ A S ++
Sbjct: 2963 SGLVGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVS 3022
Query: 132 LNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLP--------SS 183
S S G T+ + S + S + S +Q + PG S+
Sbjct: 3023 EESSTSHSQPGSTHTTAFPDSTTTSGLSQEPTASHSSQGSTEATLSPGSTTASSLGQQST 3082
Query: 184 VYPPSSGEDYGRDATAYPSAKTPSSTYPA--PFYVADGSLHPSAELWSPPGQAGFG---- 237
+ S G+ + T P S A P + + GSLH + +P G
Sbjct: 3083 TFHSSPGDT---ETTLLPDDTITSGLVEASTPTHSSTGSLHTTL---TPASSTSAGLQEE 3136
Query: 238 ----PMLGGGSSPLPLPPG-----------------SGPVGSSGSSSTFGGLHQHERMGY 276
S P PPG S P +SST G + +
Sbjct: 3137 STTFQSWPSSSDTTPSPPGTTAAPVEVSTTYHSRPSSTPTTHFSASSTTLGRSEESTTVH 3196
Query: 277 QLHGAEVNGGLPSASSFSSAPGA------TYGGVSSHTPPVSGADSLLGSRGTTAGSSGD 330
GA P+ S+ S G + G + P S + L + TT SS
Sbjct: 3197 SSPGATGTALFPTRSATSVLVGEPTTSPISSGSTETTALPGSTTTAGLSEKSTTFYSSPR 3256
Query: 331 ALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLA--GTSQWPRAGAPGALSPSYDGGLHG 388
+ L+ + + S++ + GS A G++ P S S G
Sbjct: 3257 SPDTTLSPASTTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDT 3316
Query: 389 LQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHP 448
S + G TLLP + ASG + G H
Sbjct: 3317 TLSPGSTTASSLGPESTTFHSGPGSTETTLLPDN-TTASGL---LEASTPVHSSTGSPHT 3372
Query: 449 EDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENT 508
AGST+ S P + PP + S T+ S ++
Sbjct: 3373 TLSPAGSTTRQGESTTFQSWPNSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASS 3432
Query: 509 SAADHSEEEKKELKAPRA 526
+ SEE +P A
Sbjct: 3433 TTLGRSEESTTVHSSPVA 3450
Score = 35.4 bits (80), Expect = 0.17
Identities = 89/448 (19%), Positives = 141/448 (31%), Gaps = 74/448 (16%)
Query: 134 SPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLD----TQPKKVRKVPPGLPSSVYPPSS 189
SP + SG+ S S GS+ A GS +Q PG + P S
Sbjct: 1706 SPASTTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLSPGS 1765
Query: 190 --GEDYGRDATAYPSAKTPSSTYPAPFYV-ADGSLHPSAELWSPPGQAGFGPMLGGGSSP 246
G ++T + S+ + T P A G L S + S G SP
Sbjct: 1766 TTASSLGPESTTFHSSPGSTETTLLPDNTTASGLLEASTPVHSSTG------------SP 1813
Query: 247 LPLPPGSGPVGSSGSSSTFGGLHQHE--------------RMGYQLHGAEVNGGLPSASS 292
+G G S+TF + + HG+ + S+
Sbjct: 1814 HTTLSPAGSTTRQGESTTFQSWPSSKDTMPAPPTTTSAFVELSTTSHGSPSSTPTTHFSA 1873
Query: 293 FSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAG---------------------SSGDA 331
S+ G + + H+ PV+ A + +R TT+G S A
Sbjct: 1874 SSTTLGRSEESTTVHSSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTA 1933
Query: 332 LGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQS 391
G++ S S +++ SS PST + P + A S +S
Sbjct: 1934 SGRSEESRTSHSSTTHTISSPPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEES 1993
Query: 392 KIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDG 451
+A + A T + L T P+S G + GS G
Sbjct: 1994 TASHSSQDATGTIVLPARSTTSVL---------LGESTTSPISSGSMETTALPGSTTTPG 2044
Query: 452 LAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAA 511
L+ ++ H+ P P T LS + SG+ T+ T+
Sbjct: 2045 LSEKSTTFHSS---PRSPAT--TLSPASTTSSGVSEESTTS------HSRPGSTHTTAFP 2093
Query: 512 DHSEEEKKELKAPRARTSPDEDEDDLLP 539
D + + + +SP + LLP
Sbjct: 2094 DSTTTPGLSRHSTTSHSSPGSTDTTLLP 2121
Score = 34.7 bits (78), Expect = 0.28
Identities = 89/447 (19%), Positives = 153/447 (34%), Gaps = 72/447 (16%)
Query: 134 SPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLD----TQPKKVRKVPPGLPSSVYPPSS 189
SP + SG+ S S GS+ A GS +Q PG + P S
Sbjct: 3263 SPASTTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLSPGS 3322
Query: 190 --GEDYGRDATAYPSAKTPSSTYPAPFYV-ADGSLHPSAELWSPPGQAGFGPMLGGGSSP 246
G ++T + S + T P A G L S + S G SP
Sbjct: 3323 TTASSLGPESTTFHSGPGSTETTLLPDNTTASGLLEASTPVHSSTG------------SP 3370
Query: 247 LPLPPGSGPVGSSGSSSTFGGLHQHE--------------RMGYQLHGAEVNGGLPSASS 292
+G G S+TF + + HG+ + S+
Sbjct: 3371 HTTLSPAGSTTRQGESTTFQSWPNSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSA 3430
Query: 293 FSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAG-----SSGDALGKALASIYSPD---- 343
S+ G + + H+ PV+ A + +R TT+G ++ + + +++ P+
Sbjct: 3431 SSTTLGRSEESTTVHSSPVATATTPSPARSTTSGLVEESTTYHSSPGSTQTMHFPESDTT 3490
Query: 344 -----HSSNNFSSSPSTPVGSPQGLAGTSQWPRA--GAPGALSPSYDGGLHGLQSKIEDH 396
S+ + SS+ T +P + + P + +PG+ + ++ + E+
Sbjct: 3491 SGRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEE- 3549
Query: 397 LDEAIHVLRSHAVGTAGDMHTLLPGHGA----LASGFTGPMSLGGRHAGLVGGSHPEDGL 452
A H + A GT +LP L T P+S G + GS GL
Sbjct: 3550 -STASHSSQD-ATGTI-----VLPARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGL 3602
Query: 453 AGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGATAAASEIKREEKEDEENTSAAD 512
+ ++ H+ P P T LS + SG+ T+ T+ D
Sbjct: 3603 SEKSTTFHSS---PRSPAT--TLSPASTTSSGVSEESTTS------HSRPGSTHTTAFPD 3651
Query: 513 HSEEEKKELKAPRARTSPDEDEDDLLP 539
+ + + +SP + LLP
Sbjct: 3652 STTTPGLSRHSTTSHSSPGSTDTTLLP 3678
Score = 32.7 bits (73), Expect = 1.1
Identities = 55/237 (23%), Positives = 82/237 (34%), Gaps = 18/237 (7%)
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPG------LPSSVYPPSSGEDYGRDATAYPSAK 204
P SG++ A + ++ PG LP S P E T Y S +
Sbjct: 1196 PDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTTPGLSE---ASTTFYSSPR 1252
Query: 205 TPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSST 264
+P++T + G S S PG ++P L S V SS ST
Sbjct: 1253 SPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTP-GLSEESTTVYSSSRGST 1311
Query: 265 FGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTT 324
+ H +HG E ++F S P +T+ + + SG + +
Sbjct: 1312 ETTVFPHSTTT-SVHGEE-------PTTFHSRPASTHTTLFTEDSTTSGLTEESTAFPGS 1363
Query: 325 AGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPS 381
S+ L L + + S+ SSS ST + TS P LSPS
Sbjct: 1364 PASTQTGLPATLTTADLGEESTTFPSSSGSTGTKLSPARSTTSGLVGESTPSRLSPS 1420
Score = 30.4 bits (67), Expect = 5.4
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 23/167 (13%)
Query: 65 SSSSFDPSRTFS--EGTHFTESHSSLSSSTFLGPGLGGKSGE-RGAYASFGRDAGVGGLT 121
SS S +P+ +S E TH T +S ++S GL +S S G +T
Sbjct: 4903 SSISGEPTSLYSQAESTHTTAFPASTTTS-----GLSQESTTFHSKPGSTETTLSPGSIT 4957
Query: 122 QAGFLS----------GELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQPK 171
+ F L+ SP + G+ S + S GS+ A S
Sbjct: 4958 TSSFAQEFTTPHSQPGSALSTVSPASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIH 5017
Query: 172 KVRKVP----PGLPSSVYPPS-SGEDYGRDATAYPSAKTPSSTYPAP 213
+ P PG +V P + + D G+++TA+ S+ + T P P
Sbjct: 5018 SQQSTPFPDSPGFTHTVLPATLTTTDIGQESTAFHSSSDATGTTPLP 5064
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 54.7 bits (130), Expect = 3e-07
Identities = 102/452 (22%), Positives = 152/452 (33%), Gaps = 56/452 (12%)
Query: 32 NGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSE------GTHFTESH 85
+G P+ A SG PS+ W S S +S ++ T
Sbjct: 10 SGVSTPSGSGWASSSASGAST-PSNSGWASPSASGASIPSDSGWASPSASGASTPSNSGW 68
Query: 86 SSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGF-LSGELALNSPGPLSPSGMK 144
+S S+S P G + ++AS D+G + +G + + SP S SG
Sbjct: 69 ASFSASWASIPSDSGWASPSASWASTPSDSGWASPSASGASIPSDSGWASP---SVSGAS 125
Query: 145 GTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAK 204
S ++ S S S +D + PS+ + +S + A PSA
Sbjct: 126 IPSAFWASPSASGASTPSDSGWAS------------PSASWASTSSDS----GWASPSAS 169
Query: 205 TPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSST 264
S + A G+ PS W+ P P SSP S P S +SS+
Sbjct: 170 WTSPSASCASSSASGASTPSDSGWASPSVFWVSPSTSWASSPSDFGWASTPSDSGWASSS 229
Query: 265 FGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVS---SHTPPVSGADSLLGSR 321
+ +G S+ S ++P A++ S + T SG S S
Sbjct: 230 ASCI-----------SPSASGASTSSDSGWASPSASWVSTSTSRASTSSDSGWASSSASW 278
Query: 322 GTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPS 381
+ SG A + S +S S S+P S S W A GA +PS
Sbjct: 279 DSITSDSGWVCPSASWASSSASWASAPSDSGSSSPSVSRASTLSVSGWASFSASGASAPS 338
Query: 382 YDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAG 441
G S + D + T+ D SG+ P S
Sbjct: 339 DSGWTSHSASGVSTTSDSGWASPSASGASTSSD------------SGWASP-SASWASPS 385
Query: 442 LVGGSHPEDGLAGSTSLMHNHAALPSQPGTLP 473
G S P D +G S + A++PS P P
Sbjct: 386 ASGASTPSD--SGWASPSASGASMPSAPSLCP 415
>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
Length = 1950
Score = 53.9 bits (128), Expect = 5e-07
Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 36/242 (14%)
Query: 224 SAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEV 283
++E P +G P +GGGS+P PG+ GS+G S+
Sbjct: 1607 TSERAGTPRVSGATPAVGGGSTPGEAGPGATVSGSTGVSA---------------GSITA 1651
Query: 284 NGGLPSASSFSSAPGAT-------YGGVSSHTPPVSGADSLLG-SRGTTAGSSGDALGKA 335
+ G + SS SS G T G SS G + G S G+TAGS + K
Sbjct: 1652 SPGASATSSESSKSGTTGPSVGGKTGATSSEATSSEGMSGVTGQSLGSTAGSDSEITAKT 1711
Query: 336 LASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIED 395
+ SP SP +P G G GT++W GA + G L + +E
Sbjct: 1712 SFTGSSPPGKLTR--PSPGSP-GHFSG--GTTEWGNVATTGAAGENTSGALGSTEGSVEA 1766
Query: 396 HLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGS 455
+ GT+G T PG+ A++ P+ G G G S P + G+
Sbjct: 1767 TTSAG----SGNTAGTSGTGDT-GPGNTAVSG---TPVVSPGATPGAPGSSTPGEADIGN 1818
Query: 456 TS 457
TS
Sbjct: 1819 TS 1820
Score = 47.0 bits (110), Expect = 6e-05
Identities = 85/326 (26%), Positives = 131/326 (40%), Gaps = 60/326 (18%)
Query: 46 GGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGER 105
GG G+ SG S+ S T S G T S SS S +T GP +GGK+G
Sbjct: 1624 GGGSTPGEAGPGATVSGSTGVSA--GSITASPGASATSSESSKSGTT--GPSVGGKTGAT 1679
Query: 106 GAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGS 165
+ A+ G+ G+T S G + S + T++ S++GSS
Sbjct: 1680 SSEAT--SSEGMSGVTG----------QSLGSTAGSDSEITAK--TSFTGSS-------- 1717
Query: 166 LDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLH--P 223
P K+ + PG P + ++G AT + + S + +GS+
Sbjct: 1718 ---PPGKLTRPSPGSPG--HFSGGTTEWGNVATTGAAGENTSGALGS----TEGSVEATT 1768
Query: 224 SAELWSPPGQAGFGPMLGGGSSPLPLP---PGSGPVGSSGSS---------STFG--GLH 269
SA + G +G G G ++ P PG+ P G+ GSS ++FG G
Sbjct: 1769 SAGSGNTAGTSGTGDTGPGNTAVSGTPVVSPGATP-GAPGSSTPGEADIGNTSFGKSGKS 1827
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSG-ADSLLGSRGTTAGSS 328
H+ + +N + SA T VS HT S A ++ GS+ T G+
Sbjct: 1828 GHDSL------TVLNPAFLRRTPTVSAASTTSSPVSKHTDAASATAVTISGSKPGTPGTP 1881
Query: 329 GDAL-GKALASIYSPDHSSNNFSSSP 353
G A G + S +S +S S++P
Sbjct: 1882 GGATSGGKITSGWSSSGTSTGSSNTP 1907
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 53.9 bits (128), Expect = 5e-07
Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 36/242 (14%)
Query: 224 SAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEV 283
++E P +G P +GGGS+P PG+ GS+G S+
Sbjct: 1791 TSERAGTPRVSGATPAVGGGSTPGEAGPGATVSGSTGVSA---------------GSITA 1835
Query: 284 NGGLPSASSFSSAPGAT-------YGGVSSHTPPVSGADSLLG-SRGTTAGSSGDALGKA 335
+ G + SS SS G T G SS G + G S G+TAGS + K
Sbjct: 1836 SPGASATSSESSKSGTTGPSVGGKTGATSSEATSSEGMSGVTGQSLGSTAGSDSEITAKT 1895
Query: 336 LASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIED 395
+ SP SP +P G G GT++W GA + G L + +E
Sbjct: 1896 SFTGSSPPGKLTR--PSPGSP-GHFSG--GTTEWGNVATTGAAGENTSGALGSTEGSVEA 1950
Query: 396 HLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGS 455
+ GT+G T PG+ A++ P+ G G G S P + G+
Sbjct: 1951 TTSAG----SGNTAGTSGTGDT-GPGNTAVSG---TPVVSPGATPGAPGSSTPGEADIGN 2002
Query: 456 TS 457
TS
Sbjct: 2003 TS 2004
Score = 47.0 bits (110), Expect = 6e-05
Identities = 85/326 (26%), Positives = 131/326 (40%), Gaps = 60/326 (18%)
Query: 46 GGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGER 105
GG G+ SG S+ S T S G T S SS S +T GP +GGK+G
Sbjct: 1808 GGGSTPGEAGPGATVSGSTGVSA--GSITASPGASATSSESSKSGTT--GPSVGGKTGAT 1863
Query: 106 GAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGS 165
+ A+ G+ G+T S G + S + T++ S++GSS
Sbjct: 1864 SSEAT--SSEGMSGVTG----------QSLGSTAGSDSEITAK--TSFTGSS-------- 1901
Query: 166 LDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLH--P 223
P K+ + PG P + ++G AT + + S + +GS+
Sbjct: 1902 ---PPGKLTRPSPGSPG--HFSGGTTEWGNVATTGAAGENTSGALGS----TEGSVEATT 1952
Query: 224 SAELWSPPGQAGFGPMLGGGSSPLPLP---PGSGPVGSSGSS---------STFG--GLH 269
SA + G +G G G ++ P PG+ P G+ GSS ++FG G
Sbjct: 1953 SAGSGNTAGTSGTGDTGPGNTAVSGTPVVSPGATP-GAPGSSTPGEADIGNTSFGKSGKS 2011
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSG-ADSLLGSRGTTAGSS 328
H+ + +N + SA T VS HT S A ++ GS+ T G+
Sbjct: 2012 GHDSL------TVLNPAFLRRTPTVSAASTTSSPVSKHTDAASATAVTISGSKPGTPGTP 2065
Query: 329 GDAL-GKALASIYSPDHSSNNFSSSP 353
G A G + S +S +S S++P
Sbjct: 2066 GGATSGGKITSGWSSSGTSTGSSNTP 2091
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 53.9 bits (128), Expect = 5e-07
Identities = 122/452 (26%), Positives = 143/452 (31%), Gaps = 112/452 (24%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKG--------TS 147
PGL G G+RG+ + G AG GL GPL PSG KG T
Sbjct: 509 PGLKGARGDRGSGGAQG-PAGAPGLV--------------GPLGPSGPKGKKGEPILSTI 553
Query: 148 QYYPSYSGSSRRRAADGSLDTQPK--------------------------------KVRK 175
Q P G S + G + K K
Sbjct: 554 QGMPGDRGDSGSQGFRGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHP 613
Query: 176 VPPGLPSSVYPPSSGE-----DYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSP 230
PPGLP + P G D G+D S P + GS PS
Sbjct: 614 GPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLP-CIIPGSYGPSGF---- 668
Query: 231 PGQAGF-GPMLGGGSSPLPLPPGS-GPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLP 288
PG GF GP GS LP PG G GS G + G +H E G+ G GLP
Sbjct: 669 PGTPGFPGPK---GSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFP--GPRGEKGLP 723
Query: 289 SASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNN 348
F PG P + G+ L GS+G T G G
Sbjct: 724 ---GFPGLPG------KDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKG 774
Query: 349 FSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHA 408
F P GL G G PG L P + G G ++ S
Sbjct: 775 FLGDSGLP-----GLKGVH-----GKPGLLGPKGERGSPGTPGQVGQPGTPG----SSGP 820
Query: 409 VGTAGDMHTLLPGHGALASGFTG----PMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAA 464
G G + LPG A GF G P G R GS + GL G L N
Sbjct: 821 YGIKG--KSGLPG----APGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGL 874
Query: 465 L-----PSQPGT--LPDLSRPPDSYSGLGRAG 489
+ P PG LP LS P +G G
Sbjct: 875 VGLKGSPGSPGVAGLPALSGPKGEKGSVGFVG 906
Score = 51.2 bits (121), Expect = 3e-06
Identities = 87/325 (26%), Positives = 108/325 (33%), Gaps = 90/325 (27%)
Query: 96 PGLGGKSGERG-------AYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQ 148
PGL G+ G +G ++ D G+ GL G + A PG + P+G G
Sbjct: 148 PGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGLD--GITGPQGAPGFPGAVGPAGPPGLQ- 204
Query: 149 YYPSYSGSSRRRAADGS--LDTQPKKVRKVPPGLPSSVYPP-SSGEDYGRDATAYPSAKT 205
G DG+ L Q +K K GLP PP S+GE + +P K
Sbjct: 205 ---GPPGPPGPLGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTGE---LEFMGFPKGKK 258
Query: 206 PSSTYPAPFYVADGSLHPSAELWSPPGQAGFG-------------PMLGGGSSPLPLPPG 252
S P P S PPG G G P L G P+
Sbjct: 259 GSKGEPGPKGFPGIS--------GPPGFPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGV 310
Query: 253 SGPVGSSGSSSTFG--GLHQHERMGYQ-LHGAEVNGGLPSASSFSSAPGATYGGVSSHTP 309
GP G G T G GL+ G+Q + G + + GLP F GA G + P
Sbjct: 311 QGPPGQQGKKGTLGFPGLN-----GFQGIEGQKGDIGLPGPDVFIDIDGAVISG-NPGDP 364
Query: 310 PVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQW 369
V G L G G QGL G S
Sbjct: 365 GVPGLPGLKGDEGI-------------------------------------QGLRGPSGV 387
Query: 370 PR----AGAPGALSPSYDGGLHGLQ 390
P +G PGAL P GL G Q
Sbjct: 388 PGLPALSGVPGALGPQGFPGLKGDQ 412
Score = 48.9 bits (115), Expect = 1e-05
Identities = 112/435 (25%), Positives = 144/435 (33%), Gaps = 104/435 (23%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAG--------FLSGELAL-NSPGPLSPSGMKGT 146
PG G+ GE G + GRD +G + G +SG++ L +PG +GM+G
Sbjct: 1081 PGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMRGE 1140
Query: 147 SQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTP 206
P GSS + A G L + K PG P G T PS
Sbjct: 1141 ----PGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSI--- 1193
Query: 207 SSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFG 266
+ P P A L P G+ G+ PG G +G+ G G
Sbjct: 1194 -TGVPGP-----------AGLPGPKGEKGY--------------PGIG-IGAPGKPGLRG 1226
Query: 267 GLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAG 326
Q G+ GL + APG + + + P G L G RG G
Sbjct: 1227 ---QKGDRGFP--------GLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERG-RPG 1274
Query: 327 SSGDALGKALASIYSPDHSSNNFSS--SPSTPVGSPQGLAGTSQWPR------------- 371
+G G S D F P P G QG+ G S P
Sbjct: 1275 PAGPP-GPPGPSSNQGDTGDPGFPGIPGPKGPKGD-QGIPGFSGLPGELGLKGMRGEPGF 1332
Query: 372 AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGF-- 429
G PG + P D G G++ K + G GD PG A
Sbjct: 1333 MGTPGKVGPPGDPGFPGMKGKAGPR----------GSSGLQGD-----PGQTPTAEAVQV 1377
Query: 430 -TGPMSLGGRHA--GLVG--GSHPEDGLAGSTSL-----MHNHAALPSQPGT-----LPD 474
GP+ L G GL G G+ GL GS L + LP PG LP
Sbjct: 1378 PPGPLGLPGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPG 1437
Query: 475 LSRPPDSYSGLGRAG 489
L PP G+ G
Sbjct: 1438 LQGPPGFEGAPGQQG 1452
Score = 47.8 bits (112), Expect = 3e-05
Identities = 88/329 (26%), Positives = 109/329 (33%), Gaps = 41/329 (12%)
Query: 95 GPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYS 154
G GL G G RG G+D G G L PG PSG GT P +
Sbjct: 620 GNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGT----PGFP 675
Query: 155 GSSRRRAADGSLDTQPKKVRKVPPGLPSSVY-PPSSGEDYGRDATAYPSAKTPSSTYPAP 213
G R G+ K PG P V+ P G R P P
Sbjct: 676 GPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLP 735
Query: 214 FYVAD----GSLHPSAELW----SPPGQAGFGPMLGG----GSSPLP-------LPPGSG 254
+ GS + +++ PG+ G + G G S LP P G
Sbjct: 736 GMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLG 795
Query: 255 PVGSSGSSSTFGGLHQHERMGYQ-LHGAEVNGGLPSASSFSSAPG--ATYGGVSSHTPPV 311
P G GS T G + Q G +G + GLP A F G G PP
Sbjct: 796 PKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPG 855
Query: 312 S-------GADSLLGSRGTTA--GSSGDALGKALASIYSP--DHSSNNFSSSPSTPVGSP 360
S G L G+ G GS G L ++ P + S F P P G P
Sbjct: 856 SIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIP-GLP 914
Query: 361 QGLAGTSQWPR-AGAPGALSPSYDGGLHG 388
G+ GT G+ G + PS G G
Sbjct: 915 -GIPGTRGLKGIPGSTGKMGPSGRAGTPG 942
Score = 45.8 bits (107), Expect = 1e-04
Identities = 88/344 (25%), Positives = 111/344 (32%), Gaps = 74/344 (21%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTS-------- 147
PGL G +G +GA G D G GL L G+ L+P KG
Sbjct: 121 PGLDGCNGTQGAVGFPGPD-GYPGLLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGL 179
Query: 148 ------QYYPSYSGSSRRRAADG-----------------SLDTQPKKVRKVPPGLPSSV 184
Q P + G+ G L Q +K K GLP
Sbjct: 180 DGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNMGLGFQGEKGVKGDVGLPGPA 239
Query: 185 -YPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFG------ 237
PPS+GE + +P K S P P + PPG G G
Sbjct: 240 GPPPSTGE---LEFMGFPKGKKGSKGEPGP--------KGFPGISGPPGFPGLGTTGEKG 288
Query: 238 -------PMLGGGSSPLPLPPGSGPVGSSGSSSTFG--GLHQHERMGYQ-LHGAEVNGGL 287
P L G P+ GP G G T G GL+ G+Q + G + + GL
Sbjct: 289 EKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLN-----GFQGIEGQKGDIGL 343
Query: 288 PSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTA--GSSGDALGKALASI---YSP 342
P F GA G + P V G L G G G SG AL+ + P
Sbjct: 344 PGPDVFIDIDGAVISG-NPGDPGVPGLPGLKGDEGIQGLRGPSGVPGLPALSGVPGALGP 402
Query: 343 D--HSSNNFSSSPSTPVGSPQGLAGTSQWP-RAGAPGALSPSYD 383
+P GL G P G PG SP ++
Sbjct: 403 QGFPGLKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEFE 446
Score = 43.9 bits (102), Expect = 5e-04
Identities = 96/391 (24%), Positives = 128/391 (32%), Gaps = 59/391 (15%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLS-PSGMKGTSQYY---- 150
PGL G G RG G +G +AG + +PGP+ PS + S +
Sbjct: 911 PGLPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGD 970
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTY 210
GS+ G + + R PPGLP + P G G P
Sbjct: 971 KGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGA--PGLPGIIKGVSGKPGPPGFMGIRGL 1028
Query: 211 PAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQ 270
P L S+ + PG G G SP LP SG G G +
Sbjct: 1029 P--------GLKGSSGITGFPGMPGESGSQGIRGSP-GLPGASGLPGLKGDNG------- 1072
Query: 271 HERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGD 330
++ G+ G P S F G + P G D +G G
Sbjct: 1073 ---QTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAP 1129
Query: 331 ALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQ 390
P ++ P+GSP GL G +P G PG GL+GL
Sbjct: 1130 GFPGVAGMRGEPGLPGSSGHQGAIGPLGSP-GLIGPKGFP--GFPGL------HGLNGLP 1180
Query: 391 SKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPED 450
H GT G T +PG +G GP G + G+ G+ +
Sbjct: 1181 GTKGTH-------------GTPGPSITGVPG----PAGLPGPKGEKG-YPGIGIGAPGKP 1222
Query: 451 GLAGSTS-----LMHNHAALPSQPG-TLPDL 475
GL G + A LP PG +LP L
Sbjct: 1223 GLRGQKGDRGFPGLQGPAGLPGAPGISLPSL 1253
Score = 36.2 bits (82), Expect = 0.098
Identities = 72/300 (24%), Positives = 90/300 (30%), Gaps = 66/300 (22%)
Query: 97 GLGGKSGERG---AYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSY 153
GL G GERG +G G + GFL PG P G G
Sbjct: 71 GLSGLKGERGFPGLLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGPPG-------- 122
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
DG TQ P G P + PP G +K P
Sbjct: 123 --------LDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKG--------SKGDPVLAPGS 166
Query: 214 F--YVADGSLHPSAELWSPPGQAGFGPMLGGGSSP-LPLPPG-SGPVGSSGSSSTFGGLH 269
F D L + P G GF +G P L PPG GP+G G+
Sbjct: 167 FKGMKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNMG------ 220
Query: 270 QHERMGYQ-LHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSS 328
+G+Q G + + GLP + PP +G +G GS
Sbjct: 221 ----LGFQGEKGVKGDVGLPGPAG---------------PPPSTGELEFMGFPKGKKGSK 261
Query: 329 GDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHG 388
G+ K I P P +G G P G PG P G+ G
Sbjct: 262 GEPGPKGFPGISGP-------PGFPGLGTTGEKGEKGEKGIP--GLPGPRGPMGSEGVQG 312
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 53.9 bits (128), Expect = 5e-07
Identities = 122/452 (26%), Positives = 143/452 (31%), Gaps = 112/452 (24%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKG--------TS 147
PGL G G+RG+ + G AG GL GPL PSG KG T
Sbjct: 508 PGLKGARGDRGSGGAQG-PAGAPGLV--------------GPLGPSGPKGKKGEPILSTI 552
Query: 148 QYYPSYSGSSRRRAADGSLDTQPK--------------------------------KVRK 175
Q P G S + G + K K
Sbjct: 553 QGMPGDRGDSGSQGFRGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHP 612
Query: 176 VPPGLPSSVYPPSSGE-----DYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSP 230
PPGLP + P G D G+D S P + GS PS
Sbjct: 613 GPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLP-CIIPGSYGPSGF---- 667
Query: 231 PGQAGF-GPMLGGGSSPLPLPPGS-GPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLP 288
PG GF GP GS LP PG G GS G + G +H E G+ G GLP
Sbjct: 668 PGTPGFPGPK---GSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFP--GPRGEKGLP 722
Query: 289 SASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNN 348
F PG P + G+ L GS+G T G G
Sbjct: 723 ---GFPGLPG------KDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKG 773
Query: 349 FSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHA 408
F P GL G G PG L P + G G ++ S
Sbjct: 774 FLGDSGLP-----GLKGVH-----GKPGLLGPKGERGSPGTPGQVGQPGTPG----SSGP 819
Query: 409 VGTAGDMHTLLPGHGALASGFTG----PMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAA 464
G G + LPG A GF G P G R GS + GL G L N
Sbjct: 820 YGIKG--KSGLPG----APGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGL 873
Query: 465 L-----PSQPGT--LPDLSRPPDSYSGLGRAG 489
+ P PG LP LS P +G G
Sbjct: 874 VGLKGSPGSPGVAGLPALSGPKGEKGSVGFVG 905
Score = 51.2 bits (121), Expect = 3e-06
Identities = 87/325 (26%), Positives = 108/325 (33%), Gaps = 90/325 (27%)
Query: 96 PGLGGKSGERG-------AYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQ 148
PGL G+ G +G ++ D G+ GL G + A PG + P+G G
Sbjct: 147 PGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGLD--GITGPQGAPGFPGAVGPAGPPGLQ- 203
Query: 149 YYPSYSGSSRRRAADGS--LDTQPKKVRKVPPGLPSSVYPP-SSGEDYGRDATAYPSAKT 205
G DG+ L Q +K K GLP PP S+GE + +P K
Sbjct: 204 ---GPPGPPGPLGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTGE---LEFMGFPKGKK 257
Query: 206 PSSTYPAPFYVADGSLHPSAELWSPPGQAGFG-------------PMLGGGSSPLPLPPG 252
S P P S PPG G G P L G P+
Sbjct: 258 GSKGEPGPKGFPGIS--------GPPGFPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGV 309
Query: 253 SGPVGSSGSSSTFG--GLHQHERMGYQ-LHGAEVNGGLPSASSFSSAPGATYGGVSSHTP 309
GP G G T G GL+ G+Q + G + + GLP F GA G + P
Sbjct: 310 QGPPGQQGKKGTLGFPGLN-----GFQGIEGQKGDIGLPGPDVFIDIDGAVISG-NPGDP 363
Query: 310 PVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQW 369
V G L G G QGL G S
Sbjct: 364 GVPGLPGLKGDEGI-------------------------------------QGLRGPSGV 386
Query: 370 PR----AGAPGALSPSYDGGLHGLQ 390
P +G PGAL P GL G Q
Sbjct: 387 PGLPALSGVPGALGPQGFPGLKGDQ 411
Score = 48.9 bits (115), Expect = 1e-05
Identities = 112/435 (25%), Positives = 144/435 (33%), Gaps = 104/435 (23%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAG--------FLSGELAL-NSPGPLSPSGMKGT 146
PG G+ GE G + GRD +G + G +SG++ L +PG +GM+G
Sbjct: 1080 PGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMRGE 1139
Query: 147 SQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTP 206
P GSS + A G L + K PG P G T PS
Sbjct: 1140 ----PGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSI--- 1192
Query: 207 SSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFG 266
+ P P A L P G+ G+ PG G +G+ G G
Sbjct: 1193 -TGVPGP-----------AGLPGPKGEKGY--------------PGIG-IGAPGKPGLRG 1225
Query: 267 GLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAG 326
Q G+ GL + APG + + + P G L G RG G
Sbjct: 1226 ---QKGDRGFP--------GLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERG-RPG 1273
Query: 327 SSGDALGKALASIYSPDHSSNNFSS--SPSTPVGSPQGLAGTSQWPR------------- 371
+G G S D F P P G QG+ G S P
Sbjct: 1274 PAGPP-GPPGPSSNQGDTGDPGFPGIPGPKGPKGD-QGIPGFSGLPGELGLKGMRGEPGF 1331
Query: 372 AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGF-- 429
G PG + P D G G++ K + G GD PG A
Sbjct: 1332 MGTPGKVGPPGDPGFPGMKGKAGPR----------GSSGLQGD-----PGQTPTAEAVQV 1376
Query: 430 -TGPMSLGGRHA--GLVG--GSHPEDGLAGSTSL-----MHNHAALPSQPGT-----LPD 474
GP+ L G GL G G+ GL GS L + LP PG LP
Sbjct: 1377 PPGPLGLPGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPG 1436
Query: 475 LSRPPDSYSGLGRAG 489
L PP G+ G
Sbjct: 1437 LQGPPGFEGAPGQQG 1451
Score = 47.8 bits (112), Expect = 3e-05
Identities = 88/329 (26%), Positives = 109/329 (33%), Gaps = 41/329 (12%)
Query: 95 GPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYS 154
G GL G G RG G+D G G L PG PSG GT P +
Sbjct: 619 GNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGT----PGFP 674
Query: 155 GSSRRRAADGSLDTQPKKVRKVPPGLPSSVY-PPSSGEDYGRDATAYPSAKTPSSTYPAP 213
G R G+ K PG P V+ P G R P P
Sbjct: 675 GPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLP 734
Query: 214 FYVAD----GSLHPSAELW----SPPGQAGFGPMLGG----GSSPLP-------LPPGSG 254
+ GS + +++ PG+ G + G G S LP P G
Sbjct: 735 GMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLG 794
Query: 255 PVGSSGSSSTFGGLHQHERMGYQ-LHGAEVNGGLPSASSFSSAPG--ATYGGVSSHTPPV 311
P G GS T G + Q G +G + GLP A F G G PP
Sbjct: 795 PKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPG 854
Query: 312 S-------GADSLLGSRGTTA--GSSGDALGKALASIYSP--DHSSNNFSSSPSTPVGSP 360
S G L G+ G GS G L ++ P + S F P P G P
Sbjct: 855 SIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIP-GLP 913
Query: 361 QGLAGTSQWPR-AGAPGALSPSYDGGLHG 388
G+ GT G+ G + PS G G
Sbjct: 914 -GIPGTRGLKGIPGSTGKMGPSGRAGTPG 941
Score = 45.8 bits (107), Expect = 1e-04
Identities = 88/344 (25%), Positives = 111/344 (32%), Gaps = 74/344 (21%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTS-------- 147
PGL G +G +GA G D G GL L G+ L+P KG
Sbjct: 120 PGLDGCNGTQGAVGFPGPD-GYPGLLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGL 178
Query: 148 ------QYYPSYSGSSRRRAADG-----------------SLDTQPKKVRKVPPGLPSSV 184
Q P + G+ G L Q +K K GLP
Sbjct: 179 DGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNMGLGFQGEKGVKGDVGLPGPA 238
Query: 185 -YPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFG------ 237
PPS+GE + +P K S P P + PPG G G
Sbjct: 239 GPPPSTGE---LEFMGFPKGKKGSKGEPGP--------KGFPGISGPPGFPGLGTTGEKG 287
Query: 238 -------PMLGGGSSPLPLPPGSGPVGSSGSSSTFG--GLHQHERMGYQ-LHGAEVNGGL 287
P L G P+ GP G G T G GL+ G+Q + G + + GL
Sbjct: 288 EKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLN-----GFQGIEGQKGDIGL 342
Query: 288 PSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTA--GSSGDALGKALASI---YSP 342
P F GA G + P V G L G G G SG AL+ + P
Sbjct: 343 PGPDVFIDIDGAVISG-NPGDPGVPGLPGLKGDEGIQGLRGPSGVPGLPALSGVPGALGP 401
Query: 343 D--HSSNNFSSSPSTPVGSPQGLAGTSQWP-RAGAPGALSPSYD 383
+P GL G P G PG SP ++
Sbjct: 402 QGFPGLKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEFE 445
Score = 43.9 bits (102), Expect = 5e-04
Identities = 96/391 (24%), Positives = 128/391 (32%), Gaps = 59/391 (15%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLS-PSGMKGTSQYY---- 150
PGL G G RG G +G +AG + +PGP+ PS + S +
Sbjct: 910 PGLPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGD 969
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTY 210
GS+ G + + R PPGLP + P G G P
Sbjct: 970 KGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGA--PGLPGIIKGVSGKPGPPGFMGIRGL 1027
Query: 211 PAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQ 270
P L S+ + PG G G SP LP SG G G +
Sbjct: 1028 P--------GLKGSSGITGFPGMPGESGSQGIRGSP-GLPGASGLPGLKGDNG------- 1071
Query: 271 HERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGD 330
++ G+ G P S F G + P G D +G G
Sbjct: 1072 ---QTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAP 1128
Query: 331 ALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQ 390
P ++ P+GSP GL G +P G PG GL+GL
Sbjct: 1129 GFPGVAGMRGEPGLPGSSGHQGAIGPLGSP-GLIGPKGFP--GFPGL------HGLNGLP 1179
Query: 391 SKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPED 450
H GT G T +PG +G GP G + G+ G+ +
Sbjct: 1180 GTKGTH-------------GTPGPSITGVPG----PAGLPGPKGEKG-YPGIGIGAPGKP 1221
Query: 451 GLAGSTS-----LMHNHAALPSQPG-TLPDL 475
GL G + A LP PG +LP L
Sbjct: 1222 GLRGQKGDRGFPGLQGPAGLPGAPGISLPSL 1252
Score = 36.2 bits (82), Expect = 0.098
Identities = 72/300 (24%), Positives = 90/300 (30%), Gaps = 66/300 (22%)
Query: 97 GLGGKSGERG---AYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSY 153
GL G GERG +G G + GFL PG P G G
Sbjct: 70 GLSGLKGERGFPGLLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGPPG-------- 121
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
DG TQ P G P + PP G +K P
Sbjct: 122 --------LDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKG--------SKGDPVLAPGS 165
Query: 214 F--YVADGSLHPSAELWSPPGQAGFGPMLGGGSSP-LPLPPG-SGPVGSSGSSSTFGGLH 269
F D L + P G GF +G P L PPG GP+G G+
Sbjct: 166 FKGMKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNMG------ 219
Query: 270 QHERMGYQ-LHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSS 328
+G+Q G + + GLP + PP +G +G GS
Sbjct: 220 ----LGFQGEKGVKGDVGLPGPAG---------------PPPSTGELEFMGFPKGKKGSK 260
Query: 329 GDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHG 388
G+ K I P P +G G P G PG P G+ G
Sbjct: 261 GEPGPKGFPGISGP-------PGFPGLGTTGEKGEKGEKGIP--GLPGPRGPMGSEGVQG 311
>gi|5031805 insulin receptor substrate 1 [Homo sapiens]
Length = 1242
Score = 53.5 bits (127), Expect = 6e-07
Identities = 71/266 (26%), Positives = 101/266 (37%), Gaps = 32/266 (12%)
Query: 119 GLTQAGFLSGELALNS------PGPLSPSGMK---GTSQYYPSYSGSSRRRAADGSLDTQ 169
G Q+G+LSG +A +S P L P+ + GT +Y G RR A S +
Sbjct: 902 GSDQSGYLSGPVAFHSSPSVRCPSQLQPAPREEETGTEEYMKMDLGPGRRAAWQESTGVE 961
Query: 170 PKKVRKVPPGLPSSVYP----PSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLHPSA 225
++ PPG S P PSS DY + P ++ AP AD +A
Sbjct: 962 MGRLGPAPPGAASICRPTRAVPSSRGDYMTMQMSCPRQSYVDTSPAAPVSYADMRTGIAA 1021
Query: 226 ELWSPPGQAGFGPMLGGGSSPLPLPPG------------SGPVGSSGSSS-TFGGLHQHE 272
E S P +S P P GP G G S+ T L +
Sbjct: 1022 EEVSLPRATMAAASSSSAASASPTGPQGAAELAAHSSLLGGPQGPGGMSAFTRVNLSPNR 1081
Query: 273 RMGYQLHGAEVNG--GLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGD 330
++ A+ G S+ +FSS P AT G +T P GA + +G G ++ SS D
Sbjct: 1082 NQSAKVIRADPQGCRRRHSSETFSSTPSATRVG---NTVPF-GAGAAVGGGGGSSSSSED 1137
Query: 331 ALGKALASIYSPDHSSNNFSSSPSTP 356
+ AS + +P P
Sbjct: 1138 VKRHSSASFENVWLRPGELGGAPKEP 1163
Score = 47.0 bits (110), Expect = 6e-05
Identities = 87/369 (23%), Positives = 128/369 (34%), Gaps = 87/369 (23%)
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGED-YGRDATAYPSAKTPSST 209
PS G +RR + T P + PG V S GE R A+ S +PS+
Sbjct: 294 PSQVGLTRRSRTESITATSPASMVGGKPG-SFRVRASSDGEGTMSRPASVDGSPVSPSTN 352
Query: 210 YP-APFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPL----PPGSGPVGSSGSSST 264
A + LHP P+ S P+P P + PV S SS++
Sbjct: 353 RTHAHRHRGSARLHP--------------PLNHSRSIPMPASRCSPSATSPVSLSSSSTS 398
Query: 265 FGGLHQH----ERMGYQLHGAEVNGGLPSASSFSSAP---GATYGGVS----SHTPPVSG 313
G R + G+ +GG S+ + S+P +++ V+ HTPP G
Sbjct: 399 GHGSTSDCLFPRRSSASVSGSPSDGGFISSDEYGSSPCDFRSSFRSVTPDSLGHTPPARG 458
Query: 314 ADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAG 373
+ L S G G + A Y N +P T +G+ LAG A
Sbjct: 459 EEEL--SNYICMGGKGPSTLTAPNGHYILSRGGNGHRCTPGTGLGTSPALAGDEAASAA- 515
Query: 374 APGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDM-HTLLPGHGALAS----- 427
LD R+H+ GT+ + H P ++AS
Sbjct: 516 ----------------------DLDNRFR-KRTHSAGTSPTITHQKTPSQSSVASIEEYT 552
Query: 428 ---------GFTGPMSLGGRHAGLV-GGSHPEDGL-------------AGSTSLMHNHAA 464
G +G G RH+ V S+PE+GL S++L +
Sbjct: 553 EMMPAYPPGGGSGGRLPGHRHSAFVPTRSYPEEGLEMHPLERRGGHHRPDSSTLHTDDGY 612
Query: 465 LPSQPGTLP 473
+P PG P
Sbjct: 613 MPMSPGVAP 621
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 53.5 bits (127), Expect = 6e-07
Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 36/242 (14%)
Query: 224 SAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEV 283
++E P +G P +GGGS+P PG+ GS+G S+
Sbjct: 1791 TSERAGTPRVSGETPAVGGGSTPGEAGPGATVSGSTGVSA---------------GSITA 1835
Query: 284 NGGLPSASSFSSAPGAT-------YGGVSSHTPPVSGADSLLG-SRGTTAGSSGDALGKA 335
+ G + SS SS G T G SS G + G S G+TAGS + K
Sbjct: 1836 SPGASATSSESSKSGTTGPSVGGKTGATSSEATSSEGMSGVTGQSLGSTAGSDSEITAKT 1895
Query: 336 LASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSKIED 395
+ SP SP +P G G GT++W GA + G L + +E
Sbjct: 1896 SFTGSSPPGKLTR--PSPGSP-GHFSG--GTTEWGNVATTGAAGENTSGALGSTEGSVEA 1950
Query: 396 HLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHAGLVGGSHPEDGLAGS 455
+ GT+G T PG+ A++ P+ G G G S P + G+
Sbjct: 1951 TTSAG----SGNTAGTSGTGDT-GPGNTAVSG---TPVVSPGATPGAPGSSTPGEADIGN 2002
Query: 456 TS 457
TS
Sbjct: 2003 TS 2004
Score = 47.0 bits (110), Expect = 6e-05
Identities = 85/326 (26%), Positives = 131/326 (40%), Gaps = 60/326 (18%)
Query: 46 GGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGER 105
GG G+ SG S+ S T S G T S SS S +T GP +GGK+G
Sbjct: 1808 GGGSTPGEAGPGATVSGSTGVSA--GSITASPGASATSSESSKSGTT--GPSVGGKTGAT 1863
Query: 106 GAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGS 165
+ A+ G+ G+T S G + S + T++ S++GSS
Sbjct: 1864 SSEAT--SSEGMSGVTG----------QSLGSTAGSDSEITAK--TSFTGSS-------- 1901
Query: 166 LDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSLH--P 223
P K+ + PG P + ++G AT + + S + +GS+
Sbjct: 1902 ---PPGKLTRPSPGSPG--HFSGGTTEWGNVATTGAAGENTSGALGS----TEGSVEATT 1952
Query: 224 SAELWSPPGQAGFGPMLGGGSSPLPLP---PGSGPVGSSGSS---------STFG--GLH 269
SA + G +G G G ++ P PG+ P G+ GSS ++FG G
Sbjct: 1953 SAGSGNTAGTSGTGDTGPGNTAVSGTPVVSPGATP-GAPGSSTPGEADIGNTSFGKSGKS 2011
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSG-ADSLLGSRGTTAGSS 328
H+ + +N + SA T VS HT S A ++ GS+ T G+
Sbjct: 2012 GHDSL------TVLNPAFLRRTPTVSAASTTSSPVSKHTDAASATAVTISGSKPGTPGTP 2065
Query: 329 GDAL-GKALASIYSPDHSSNNFSSSP 353
G A G + S +S +S S++P
Sbjct: 2066 GGATSGGKITSGWSSSGTSTGASNTP 2091
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 52.8 bits (125), Expect = 1e-06
Identities = 81/306 (26%), Positives = 98/306 (32%), Gaps = 36/306 (11%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGT-----SQYY 150
PG G +G GA G GVG L G SPG G+KG +
Sbjct: 1096 PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1155
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAK-----T 205
G G K P G P PP G G+D +
Sbjct: 1156 SGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1215
Query: 206 PSSTYPAPFYVADGSLHPSAELWSP--PGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSS 263
P S P G L SP G+ G G G + P +GPVG +G +
Sbjct: 1216 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG-GKGAKGDPGAIGAPGKTGPVGPAGPAG 1274
Query: 264 TFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT 323
G + GLP + PGAT G + PV G L G RG
Sbjct: 1275 K--------------PGPDGLRGLPGSVGQQGRPGAT--GQAGPPGPV-GPPGLPGLRG- 1316
Query: 324 TAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYD 383
AG+ G+ L + P + PQG G Q G PGA P
Sbjct: 1317 DAGAKGEKGHPGLIGLIGPPGEQ---GEKGDRGLPGPQGSPG--QKGEMGIPGASGPIGP 1371
Query: 384 GGLHGL 389
GG GL
Sbjct: 1372 GGPPGL 1377
Score = 49.7 bits (117), Expect = 9e-06
Identities = 122/526 (23%), Positives = 160/526 (30%), Gaps = 74/526 (14%)
Query: 29 PVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSL 88
P GK PA L G G GL ++G G S P S G E ++
Sbjct: 886 PGAPGKDGPAGLRGFP-GERGLPG--TAGGPGLKGNEGPSGPPGPAGSPG----ERGAAG 938
Query: 89 SSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQ 148
S PG G G GA G G + G + + PGP P G+ G
Sbjct: 939 SGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE-- 996
Query: 149 YYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSS 208
G G T+ K PPG P + P G+ A P A+ P
Sbjct: 997 -----DGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGP--VGQPGAAGADGEPGARGPQG 1049
Query: 209 TYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGL 268
+ A G GF G P+ L GP G G + G +
Sbjct: 1050 HFGAK---------------GDEGTRGF----NGPPGPIGLQGLPGPSGEKGETGDVGPM 1090
Query: 269 HQHERMGYQ----LHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT- 323
G + +GA+ G P PG S +P + G + G RG
Sbjct: 1091 GPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGER 1150
Query: 324 ----TAGSSGDALGKALASIYSPDHSSNN-----FSSSPSTP-VGSPQGLAGT----SQW 369
+G G+ D N F P P G P+G G +
Sbjct: 1151 GEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED 1210
Query: 370 PRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGF 429
G PG+ P+ + G G K R G GD PG A G
Sbjct: 1211 GEPGQPGSPGPTGENGPPGPLGK-RGPAGSPGSEGRQGGKGAKGD-----PG-AIGAPGK 1263
Query: 430 TGPMSLGGRHAGLVGGSHPED--GLAGSTSLMHNHAAL-------PSQPGTLPDLSRPPD 480
TGP+ AG G P+ GL GS A P P LP L
Sbjct: 1264 TGPVG----PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1319
Query: 481 SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRA 526
+ G G + ++ + S +K E+ P A
Sbjct: 1320 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA 1365
Score = 46.6 bits (109), Expect = 7e-05
Identities = 83/328 (25%), Positives = 102/328 (31%), Gaps = 51/328 (15%)
Query: 97 GLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGT-----SQYYP 151
GL GKSG RG G G G + GP P G +G +P
Sbjct: 743 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFP 802
Query: 152 SYSGSSRRRAADGSLDTQPKKVRKV-------PPGLPSSVYPP-SSGEDYGRDATAYPSA 203
G DG L P + +V PPG P V P ++GE +P
Sbjct: 803 GPKGPPGPPGKDG-LPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 861
Query: 204 KTPSSTYPAPFYV-------------ADGSLHPSAELWSP-----PGQAGFGPMLGGGSS 245
P P A G P+ P PG AG GP L G
Sbjct: 862 PGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG-GPGLKGNEG 920
Query: 246 PLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVS 305
P P +G G G++ + G + R G Q G P A+ PG
Sbjct: 921 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQ--------GPPGAAGEKGVPGEKGPIGP 972
Query: 306 SHTPPVSGADSLLGSRGT--TAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGL 363
+ V G L G G AG GD + P + P G P +
Sbjct: 973 TGRDGVQGPVGLPGPAGPPGVAGEDGDK-----GEVGDPGQKGTKGNKGEHGPPGPPGPI 1027
Query: 364 AGTSQWPRAGA---PGALSPSYDGGLHG 388
Q AGA PGA P G G
Sbjct: 1028 GPVGQPGAAGADGEPGARGPQGHFGAKG 1055
Score = 38.5 bits (88), Expect = 0.020
Identities = 49/184 (26%), Positives = 62/184 (33%), Gaps = 30/184 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTS--QYYPSY 153
PG GK G G+ S GR G G G + GP P+G G + P
Sbjct: 1228 PGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGS 1287
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYP-----------S 202
G R A G P V PPGLP G+ + +P
Sbjct: 1288 VGQQGRPGATGQAG-PPGPVG--PPGLPG-----LRGDAGAKGEKGHPGLIGLIGPPGEQ 1339
Query: 203 AKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSS 262
+ P P GS E+ P GP GG LP P +GP G+ G++
Sbjct: 1340 GEKGDRGLPGP----QGSPGQKGEMGIPGASGPIGP---GGPPGLPGP--AGPKGAKGAT 1390
Query: 263 STFG 266
G
Sbjct: 1391 GPGG 1394
Score = 37.7 bits (86), Expect = 0.034
Identities = 65/250 (26%), Positives = 80/250 (32%), Gaps = 46/250 (18%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQY--YPSY 153
PGL G+SG+ G G G +AG A + G G+KG + P
Sbjct: 421 PGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGL 480
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
G R G+ GLP PP + G D P P + P
Sbjct: 481 PGEKGHRGDTGA------------QGLPG---PPGEDGERGDDGEIGPRG-LPGESGPR- 523
Query: 214 FYVADGSLHPSAE--LWSPPGQAGF----GPMLGGGSSPLPLPPG-SGPVGSSGSSSTFG 266
G L P + PPG G GP G P PPG G G+ G G
Sbjct: 524 -----GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQG 578
Query: 267 GLHQHERMGYQ----LHGAEVNGGLPSASSFSSAPGATYGGVSSHTPP----------VS 312
+ H G Q L G + G P PG T G P V
Sbjct: 579 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG-TKGNQGPSGPQGPLGYPGPRGVK 637
Query: 313 GADSLLGSRG 322
G D + G +G
Sbjct: 638 GVDGIRGLKG 647
Score = 36.2 bits (82), Expect = 0.098
Identities = 80/299 (26%), Positives = 94/299 (31%), Gaps = 49/299 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PG G+ GERG G G G L GP P G+ G P G
Sbjct: 496 PGPPGEDGERGDDGEIGPRGLPGESGPRGLL---------GPKGPPGIPGP----PGVRG 542
Query: 156 SSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFY 215
+ GSL Q + G P + P G P K P
Sbjct: 543 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPG--- 599
Query: 216 VADGSL-HPSAELWSPPGQAG-FGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHER 273
+DG HP E PPG G GP G PL P G G G GL H+
Sbjct: 600 -SDGPPGHPGKE--GPPGTKGNQGP--SGPQGPLGYPGPRGVKGVDG----IRGLKGHK- 649
Query: 274 MGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALG 333
G + G P F G P G D G +G T G +GD
Sbjct: 650 ------GEKGEDGFP---GFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRT-GPTGDPGP 699
Query: 334 KALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSK 392
L + P P QG G+ +P G PGA S + G GL K
Sbjct: 700 PGLMG----EKGKLGVPGLPGYP--GRQGPKGSLGFP--GFPGA---SGEKGARGLSGK 747
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 52.8 bits (125), Expect = 1e-06
Identities = 81/306 (26%), Positives = 98/306 (32%), Gaps = 36/306 (11%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGT-----SQYY 150
PG G +G GA G GVG L G SPG G+KG +
Sbjct: 1075 PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1134
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAK-----T 205
G G K P G P PP G G+D +
Sbjct: 1135 SGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1194
Query: 206 PSSTYPAPFYVADGSLHPSAELWSP--PGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSS 263
P S P G L SP G+ G G G + P +GPVG +G +
Sbjct: 1195 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG-GKGAKGDPGAIGAPGKTGPVGPAGPAG 1253
Query: 264 TFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT 323
G + GLP + PGAT G + PV G L G RG
Sbjct: 1254 K--------------PGPDGLRGLPGSVGQQGRPGAT--GQAGPPGPV-GPPGLPGLRG- 1295
Query: 324 TAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYD 383
AG+ G+ L + P + PQG G Q G PGA P
Sbjct: 1296 DAGAKGEKGHPGLIGLIGPPGEQ---GEKGDRGLPGPQGSPG--QKGEMGIPGASGPIGP 1350
Query: 384 GGLHGL 389
GG GL
Sbjct: 1351 GGPPGL 1356
Score = 49.7 bits (117), Expect = 9e-06
Identities = 122/526 (23%), Positives = 160/526 (30%), Gaps = 74/526 (14%)
Query: 29 PVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSL 88
P GK PA L G G GL ++G G S P S G E ++
Sbjct: 865 PGAPGKDGPAGLRGFP-GERGLPG--TAGGPGLKGNEGPSGPPGPAGSPG----ERGAAG 917
Query: 89 SSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQ 148
S PG G G GA G G + G + + PGP P G+ G
Sbjct: 918 SGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE-- 975
Query: 149 YYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSS 208
G G T+ K PPG P + P G+ A P A+ P
Sbjct: 976 -----DGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGP--VGQPGAAGADGEPGARGPQG 1028
Query: 209 TYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGL 268
+ A G GF G P+ L GP G G + G +
Sbjct: 1029 HFGAK---------------GDEGTRGF----NGPPGPIGLQGLPGPSGEKGETGDVGPM 1069
Query: 269 HQHERMGYQ----LHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT- 323
G + +GA+ G P PG S +P + G + G RG
Sbjct: 1070 GPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGER 1129
Query: 324 ----TAGSSGDALGKALASIYSPDHSSNN-----FSSSPSTP-VGSPQGLAGT----SQW 369
+G G+ D N F P P G P+G G +
Sbjct: 1130 GEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED 1189
Query: 370 PRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGF 429
G PG+ P+ + G G K R G GD PG A G
Sbjct: 1190 GEPGQPGSPGPTGENGPPGPLGK-RGPAGSPGSEGRQGGKGAKGD-----PG-AIGAPGK 1242
Query: 430 TGPMSLGGRHAGLVGGSHPED--GLAGSTSLMHNHAAL-------PSQPGTLPDLSRPPD 480
TGP+ AG G P+ GL GS A P P LP L
Sbjct: 1243 TGPVG----PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1298
Query: 481 SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRA 526
+ G G + ++ + S +K E+ P A
Sbjct: 1299 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA 1344
Score = 46.6 bits (109), Expect = 7e-05
Identities = 83/328 (25%), Positives = 102/328 (31%), Gaps = 51/328 (15%)
Query: 97 GLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGT-----SQYYP 151
GL GKSG RG G G G + GP P G +G +P
Sbjct: 722 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFP 781
Query: 152 SYSGSSRRRAADGSLDTQPKKVRKV-------PPGLPSSVYPP-SSGEDYGRDATAYPSA 203
G DG L P + +V PPG P V P ++GE +P
Sbjct: 782 GPKGPPGPPGKDG-LPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 840
Query: 204 KTPSSTYPAPFYV-------------ADGSLHPSAELWSP-----PGQAGFGPMLGGGSS 245
P P A G P+ P PG AG GP L G
Sbjct: 841 PGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG-GPGLKGNEG 899
Query: 246 PLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVS 305
P P +G G G++ + G + R G Q G P A+ PG
Sbjct: 900 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQ--------GPPGAAGEKGVPGEKGPIGP 951
Query: 306 SHTPPVSGADSLLGSRGT--TAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGL 363
+ V G L G G AG GD + P + P G P +
Sbjct: 952 TGRDGVQGPVGLPGPAGPPGVAGEDGDK-----GEVGDPGQKGTKGNKGEHGPPGPPGPI 1006
Query: 364 AGTSQWPRAGA---PGALSPSYDGGLHG 388
Q AGA PGA P G G
Sbjct: 1007 GPVGQPGAAGADGEPGARGPQGHFGAKG 1034
Score = 38.5 bits (88), Expect = 0.020
Identities = 49/184 (26%), Positives = 62/184 (33%), Gaps = 30/184 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTS--QYYPSY 153
PG GK G G+ S GR G G G + GP P+G G + P
Sbjct: 1207 PGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGS 1266
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYP-----------S 202
G R A G P V PPGLP G+ + +P
Sbjct: 1267 VGQQGRPGATGQAG-PPGPVG--PPGLPG-----LRGDAGAKGEKGHPGLIGLIGPPGEQ 1318
Query: 203 AKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSS 262
+ P P GS E+ P GP GG LP P +GP G+ G++
Sbjct: 1319 GEKGDRGLPGP----QGSPGQKGEMGIPGASGPIGP---GGPPGLPGP--AGPKGAKGAT 1369
Query: 263 STFG 266
G
Sbjct: 1370 GPGG 1373
Score = 37.7 bits (86), Expect = 0.034
Identities = 65/250 (26%), Positives = 80/250 (32%), Gaps = 46/250 (18%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQY--YPSY 153
PGL G+SG+ G G G +AG A + G G+KG + P
Sbjct: 400 PGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGL 459
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
G R G+ GLP PP + G D P P + P
Sbjct: 460 PGEKGHRGDTGA------------QGLPG---PPGEDGERGDDGEIGPRG-LPGESGPR- 502
Query: 214 FYVADGSLHPSAE--LWSPPGQAGF----GPMLGGGSSPLPLPPG-SGPVGSSGSSSTFG 266
G L P + PPG G GP G P PPG G G+ G G
Sbjct: 503 -----GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQG 557
Query: 267 GLHQHERMGYQ----LHGAEVNGGLPSASSFSSAPGATYGGVSSHTPP----------VS 312
+ H G Q L G + G P PG T G P V
Sbjct: 558 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG-TKGNQGPSGPQGPLGYPGPRGVK 616
Query: 313 GADSLLGSRG 322
G D + G +G
Sbjct: 617 GVDGIRGLKG 626
Score = 36.2 bits (82), Expect = 0.098
Identities = 80/299 (26%), Positives = 94/299 (31%), Gaps = 49/299 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PG G+ GERG G G G L GP P G+ G P G
Sbjct: 475 PGPPGEDGERGDDGEIGPRGLPGESGPRGLL---------GPKGPPGIPGP----PGVRG 521
Query: 156 SSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFY 215
+ GSL Q + G P + P G P K P
Sbjct: 522 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPG--- 578
Query: 216 VADGSL-HPSAELWSPPGQAG-FGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHER 273
+DG HP E PPG G GP G PL P G G G GL H+
Sbjct: 579 -SDGPPGHPGKE--GPPGTKGNQGP--SGPQGPLGYPGPRGVKGVDG----IRGLKGHK- 628
Query: 274 MGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALG 333
G + G P F G P G D G +G T G +GD
Sbjct: 629 ------GEKGEDGFP---GFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRT-GPTGDPGP 678
Query: 334 KALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSK 392
L + P P QG G+ +P G PGA S + G GL K
Sbjct: 679 PGLMG----EKGKLGVPGLPGYP--GRQGPKGSLGFP--GFPGA---SGEKGARGLSGK 726
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 52.8 bits (125), Expect = 1e-06
Identities = 81/306 (26%), Positives = 98/306 (32%), Gaps = 36/306 (11%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGT-----SQYY 150
PG G +G GA G GVG L G SPG G+KG +
Sbjct: 1182 PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1241
Query: 151 PSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAK-----T 205
G G K P G P PP G G+D +
Sbjct: 1242 SGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1301
Query: 206 PSSTYPAPFYVADGSLHPSAELWSP--PGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSS 263
P S P G L SP G+ G G G + P +GPVG +G +
Sbjct: 1302 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG-GKGAKGDPGAIGAPGKTGPVGPAGPAG 1360
Query: 264 TFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT 323
G + GLP + PGAT G + PV G L G RG
Sbjct: 1361 K--------------PGPDGLRGLPGSVGQQGRPGAT--GQAGPPGPV-GPPGLPGLRG- 1402
Query: 324 TAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYD 383
AG+ G+ L + P + PQG G Q G PGA P
Sbjct: 1403 DAGAKGEKGHPGLIGLIGPPGEQ---GEKGDRGLPGPQGSPG--QKGEMGIPGASGPIGP 1457
Query: 384 GGLHGL 389
GG GL
Sbjct: 1458 GGPPGL 1463
Score = 49.7 bits (117), Expect = 9e-06
Identities = 122/526 (23%), Positives = 160/526 (30%), Gaps = 74/526 (14%)
Query: 29 PVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSL 88
P GK PA L G G GL ++G G S P S G E ++
Sbjct: 972 PGAPGKDGPAGLRGFP-GERGLPG--TAGGPGLKGNEGPSGPPGPAGSPG----ERGAAG 1024
Query: 89 SSSTFLGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQ 148
S PG G G GA G G + G + + PGP P G+ G
Sbjct: 1025 SGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE-- 1082
Query: 149 YYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSS 208
G G T+ K PPG P + P G+ A P A+ P
Sbjct: 1083 -----DGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGP--VGQPGAAGADGEPGARGPQG 1135
Query: 209 TYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGL 268
+ A G GF G P+ L GP G G + G +
Sbjct: 1136 HFGAK---------------GDEGTRGF----NGPPGPIGLQGLPGPSGEKGETGDVGPM 1176
Query: 269 HQHERMGYQ----LHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGT- 323
G + +GA+ G P PG S +P + G + G RG
Sbjct: 1177 GPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGER 1236
Query: 324 ----TAGSSGDALGKALASIYSPDHSSNN-----FSSSPSTP-VGSPQGLAGT----SQW 369
+G G+ D N F P P G P+G G +
Sbjct: 1237 GEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED 1296
Query: 370 PRAGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGF 429
G PG+ P+ + G G K R G GD PG A G
Sbjct: 1297 GEPGQPGSPGPTGENGPPGPLGK-RGPAGSPGSEGRQGGKGAKGD-----PG-AIGAPGK 1349
Query: 430 TGPMSLGGRHAGLVGGSHPED--GLAGSTSLMHNHAAL-------PSQPGTLPDLSRPPD 480
TGP+ AG G P+ GL GS A P P LP L
Sbjct: 1350 TGPVG----PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1405
Query: 481 SYSGLGRAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRA 526
+ G G + ++ + S +K E+ P A
Sbjct: 1406 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA 1451
Score = 46.6 bits (109), Expect = 7e-05
Identities = 83/328 (25%), Positives = 102/328 (31%), Gaps = 51/328 (15%)
Query: 97 GLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGT-----SQYYP 151
GL GKSG RG G G G + GP P G +G +P
Sbjct: 829 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFP 888
Query: 152 SYSGSSRRRAADGSLDTQPKKVRKV-------PPGLPSSVYPP-SSGEDYGRDATAYPSA 203
G DG L P + +V PPG P V P ++GE +P
Sbjct: 889 GPKGPPGPPGKDG-LPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 947
Query: 204 KTPSSTYPAPFYV-------------ADGSLHPSAELWSP-----PGQAGFGPMLGGGSS 245
P P A G P+ P PG AG GP L G
Sbjct: 948 PGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG-GPGLKGNEG 1006
Query: 246 PLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVS 305
P P +G G G++ + G + R G Q G P A+ PG
Sbjct: 1007 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQ--------GPPGAAGEKGVPGEKGPIGP 1058
Query: 306 SHTPPVSGADSLLGSRGT--TAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGL 363
+ V G L G G AG GD + P + P G P +
Sbjct: 1059 TGRDGVQGPVGLPGPAGPPGVAGEDGDK-----GEVGDPGQKGTKGNKGEHGPPGPPGPI 1113
Query: 364 AGTSQWPRAGA---PGALSPSYDGGLHG 388
Q AGA PGA P G G
Sbjct: 1114 GPVGQPGAAGADGEPGARGPQGHFGAKG 1141
Score = 38.5 bits (88), Expect = 0.020
Identities = 49/184 (26%), Positives = 62/184 (33%), Gaps = 30/184 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTS--QYYPSY 153
PG GK G G+ S GR G G G + GP P+G G + P
Sbjct: 1314 PGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGS 1373
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYP-----------S 202
G R A G P V PPGLP G+ + +P
Sbjct: 1374 VGQQGRPGATGQAG-PPGPVG--PPGLPG-----LRGDAGAKGEKGHPGLIGLIGPPGEQ 1425
Query: 203 AKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSS 262
+ P P GS E+ P GP GG LP P +GP G+ G++
Sbjct: 1426 GEKGDRGLPGP----QGSPGQKGEMGIPGASGPIGP---GGPPGLPGP--AGPKGAKGAT 1476
Query: 263 STFG 266
G
Sbjct: 1477 GPGG 1480
Score = 37.7 bits (86), Expect = 0.034
Identities = 65/250 (26%), Positives = 80/250 (32%), Gaps = 46/250 (18%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQY--YPSY 153
PGL G+SG+ G G G +AG A + G G+KG + P
Sbjct: 507 PGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGL 566
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
G R G+ GLP PP + G D P P + P
Sbjct: 567 PGEKGHRGDTGA------------QGLPG---PPGEDGERGDDGEIGPRG-LPGESGPR- 609
Query: 214 FYVADGSLHPSAE--LWSPPGQAGF----GPMLGGGSSPLPLPPG-SGPVGSSGSSSTFG 266
G L P + PPG G GP G P PPG G G+ G G
Sbjct: 610 -----GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQG 664
Query: 267 GLHQHERMGYQ----LHGAEVNGGLPSASSFSSAPGATYGGVSSHTPP----------VS 312
+ H G Q L G + G P PG T G P V
Sbjct: 665 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG-TKGNQGPSGPQGPLGYPGPRGVK 723
Query: 313 GADSLLGSRG 322
G D + G +G
Sbjct: 724 GVDGIRGLKG 733
Score = 36.2 bits (82), Expect = 0.098
Identities = 80/299 (26%), Positives = 94/299 (31%), Gaps = 49/299 (16%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PG G+ GERG G G G L GP P G+ G P G
Sbjct: 582 PGPPGEDGERGDDGEIGPRGLPGESGPRGLL---------GPKGPPGIPGP----PGVRG 628
Query: 156 SSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFY 215
+ GSL Q + G P + P G P K P
Sbjct: 629 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPG--- 685
Query: 216 VADGSL-HPSAELWSPPGQAG-FGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHER 273
+DG HP E PPG G GP G PL P G G G GL H+
Sbjct: 686 -SDGPPGHPGKE--GPPGTKGNQGP--SGPQGPLGYPGPRGVKGVDG----IRGLKGHK- 735
Query: 274 MGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALG 333
G + G P F G P G D G +G T G +GD
Sbjct: 736 ------GEKGEDGFP---GFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRT-GPTGDPGP 785
Query: 334 KALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGLQSK 392
L + P P QG G+ +P G PGA S + G GL K
Sbjct: 786 PGLMG----EKGKLGVPGLPGYP--GRQGPKGSLGFP--GFPGA---SGEKGARGLSGK 833
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 52.4 bits (124), Expect = 1e-06
Identities = 91/370 (24%), Positives = 128/370 (34%), Gaps = 47/370 (12%)
Query: 35 GRPASLAGAQFGGSGLEDRPSSGSWGSGD-QSSSSFDPSRTFSEGTHFTESHSSLSSSTF 93
G+P+S +Q+ SG S S S SSSS S S S LSSS +
Sbjct: 1075 GKPSS--HSQYTSSGSVSSSGSKSHHSHSSSSSSSASTSGKMKSSKSEGSSSSKLSSSMY 1132
Query: 94 LGPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSY 153
G G S + + S G+ G +T+ G SG + PS + S P+
Sbjct: 1133 SSQGSSGSSQSKNSSQSGGK-PGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNI 1191
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
S S R G D ++ VP PSS AK+P S+
Sbjct: 1192 SPSHSR--PPGGSDKLASPMKPVPGTPPSS------------------KAKSPISS---- 1227
Query: 214 FYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHER 273
G H S S G + GS PP S + SSS+F
Sbjct: 1228 ---GSGGSHMSGTS-SSSGMKSSSGLGSSGSLSQKTPPSSN--SCTASSSSFSSSGSSMS 1281
Query: 274 MGYQLHGAEVNGGLPSAS---SFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGD 330
HG+ G PS + S ++ GV + P G D L G G + SS
Sbjct: 1282 SSQNQHGSS-KGKSPSRNKKPSLTAVIDKLKHGVVTSGP--GGEDPLDGQMGVSTNSSSH 1338
Query: 331 ALGK----ALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGA---LSPSYD 383
+ + S+ S ST S TS+ G+ G + +D
Sbjct: 1339 PMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSSKKTSESKNVGSTGVAKIIISKHD 1398
Query: 384 GGLHGLQSKI 393
GG +++K+
Sbjct: 1399 GGSPSIKAKV 1408
Score = 47.0 bits (110), Expect = 6e-05
Identities = 99/399 (24%), Positives = 146/399 (36%), Gaps = 67/399 (16%)
Query: 37 PASLAGAQFGGSGLEDRPSSGSWGSG---------DQSSSSF-----DPSRTFSEGTHFT 82
PA L A GS D P++ + G QS S F D S + F
Sbjct: 838 PADLI-ADAAGSPSSDSPTNHFFHDGVDFNPDLLNSQSQSGFGEEYFDESSQSGDNDDF- 895
Query: 83 ESHSSLSSSTFLGPGLGGKSGERGAYASFGRDA------GVGGLTQAGFLSGELALNSPG 136
+ +S + +T P LGG +GE + D V G A E S G
Sbjct: 896 KGFASQALNTLGVPMLGGDNGETKFKGNNQADTVDFSIISVAGKALAPADLMEHHSGSQG 955
Query: 137 PLSPSGMKG---TSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDY 193
PL +G G T + +G+S + LD++P K + P S P +
Sbjct: 956 PLLTTGDLGKEKTQKRVKEGNGTSNSTLSGPGLDSKPGKRSRTPSNDGKSKDKPPKRKKA 1015
Query: 194 GRDATAYPSAKTPSSTYPAPFYVADGSLHPSA--ELWSPPGQAGFGPMLGGGSSPLP--- 248
+ + PS + + + P GS P + +PPG A + P+P
Sbjct: 1016 DTEGKS-PSHSSSNRPFTPPTSTG-GSKSPGSAGRSQTPPGVA---------TPPIPKIT 1064
Query: 249 --LPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSS 306
+P G+ VG S S + G + H S SS SS+ +T G + S
Sbjct: 1065 IQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHH--------SHSSSSSSSASTSGKMKS 1116
Query: 307 HTPPVSGADSLLGSRGTTAGSSGDAL--------GKALASIYSPDHSSNNFSSSPSTPVG 358
S + L S ++ GSSG + GK +S + S+ SS+ P G
Sbjct: 1117 SKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQG 1176
Query: 359 SPQGLAGTSQWPRAGAPGALSPSYD---GGLHGLQSKIE 394
P L P P +SPS+ GG L S ++
Sbjct: 1177 KPSSLMN----PSLSKPN-ISPSHSRPPGGSDKLASPMK 1210
Score = 38.9 bits (89), Expect = 0.015
Identities = 70/273 (25%), Positives = 101/273 (36%), Gaps = 29/273 (10%)
Query: 4 PQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAGAQFGGSGLEDRPSSGSWGSGD 63
P P G +L+ S M P+P T + S + GGS + SS SG
Sbjct: 1193 PSHSRPPGGSDKLA-----SPMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSS----SGM 1243
Query: 64 QSSSSFDPSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVG---GL 120
+SSS S + S+ T + + + SSS+F G S + +S G+ L
Sbjct: 1244 KSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSL 1303
Query: 121 TQA-GFLSGELALNSPGPLSP-SGMKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKVPP 178
T L + + PG P G G S S+ SS+ + G + +K K
Sbjct: 1304 TAVIDKLKHGVVTSGPGGEDPLDGQMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKD-- 1361
Query: 179 GLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVA--DG---SLHPSAELWSPPGQ 233
S V S D + + +K ST A ++ DG S+ L P
Sbjct: 1362 --KSKVSTSGSSVDSSKKTS---ESKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGES 1416
Query: 234 AGFG---PMLGGGSSPLPLPPGSGPVGSSGSSS 263
+G G M + PL GS P GS S
Sbjct: 1417 SGEGLRPQMASSKNYGSPLISGSTPKHERGSPS 1449
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 52.4 bits (124), Expect = 1e-06
Identities = 83/289 (28%), Positives = 96/289 (33%), Gaps = 47/289 (16%)
Query: 98 LGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSS 157
L G G +G S G G G + G L PGP P G KG S P G
Sbjct: 565 LRGSPGPKGDMGSPG-PKGDRGFPGTPGIPGPLG--HPGPQGPKGQKG-SVGDPGMEGPM 620
Query: 158 RRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVA 217
+R +G P G PP SGE R A P P
Sbjct: 621 GQRGREG------------PMGPRGEAGPPGSGEKGERGAAGEPGPHGPPG--------V 660
Query: 218 DGSLHPSAELWSPPGQAGFGPM-LGGGSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGY 276
GS+ P SP Q GP+ L G + LP G G G G Q E+
Sbjct: 661 PGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKG--DQGEKGPR 718
Query: 277 QLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKAL 336
L G GLP A A GA +G D G RG G +G +
Sbjct: 719 GLTGEPGMRGLPGAVGEPGAKGAM---------GPAGPDGHQGPRG-EQGLTG------M 762
Query: 337 ASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWP----RAGAPGALSPS 381
I P S + T PQGL GT P GAPG + S
Sbjct: 763 PGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTS 811
Score = 45.1 bits (105), Expect = 2e-04
Identities = 82/328 (25%), Positives = 107/328 (32%), Gaps = 89/328 (27%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSP-------------GPLSPSG 142
PG G+ G +GA G D G + G L+G + P GP P G
Sbjct: 730 PGAVGEPGAKGAMGPAGPDGHQGPRGEQG-LTGMPGIRGPPGPSGDPGKPGLTGPQGPQG 788
Query: 143 MKGTSQYYPSYSGSSRRRAADGSLDTQPKKVRKV---PPGLPSSVYPPSSGEDYGRDATA 199
+ GT P G A G + T PPG P ++ PP
Sbjct: 789 LPGT----PGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGP---------- 834
Query: 200 YPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAG----FGPMLGGGSSP-------LP 248
P A P+ P + L PPG G GP + G P LP
Sbjct: 835 -PGAPGPAGPAGLPGH------QEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLP 887
Query: 249 LPPG-------------SGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSS 295
PPG SGP G G G G+Q G + GLP FS+
Sbjct: 888 GPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQ--GEQ---GLP---GFST 939
Query: 296 APGATYGGVSSHTPPVSGADSLLGSRGT--TAGSSGDALGKALASIYSPDHSSNNFSSSP 353
+ +++G P G G +G G+ G G + SS + S P
Sbjct: 940 SGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPS-----EGGSSSTMYVSGP 994
Query: 354 STPVGSPQGLAGTSQWPRAGAPGALSPS 381
P G P G PG++S S
Sbjct: 995 PGPPGPP------------GPPGSISSS 1010
Score = 38.1 bits (87), Expect = 0.026
Identities = 79/299 (26%), Positives = 106/299 (35%), Gaps = 57/299 (19%)
Query: 89 SSSTFLG-----PGLGGKSGERGAYASFGR--DAGVGGLTQAGFLSGELALNSP-GPLSP 140
+S TFL PG G G++G G + G+ G + +G S L L P GP P
Sbjct: 899 NSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGP 958
Query: 141 SGMKGTS--QYYPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDAT 198
G KG P G + GS T PPG P PP S G++
Sbjct: 959 QGPKGDKGDPGVPGALGIPSGPSEGGSSSTM---YVSGPPGPPGPPGPPGSISSSGQEIQ 1015
Query: 199 AYPSAKTPSSTYPAPFYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGS 258
Y S S + + G PPG G PP GPV +
Sbjct: 1016 QYISEYMQSDSIRSYLSGVQG----------PPGPPG--------------PP--GPVTT 1049
Query: 259 -SGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSL 317
+G + + L H + G V+ S SS V + L
Sbjct: 1050 ITGETFDYSELASHVVSYLRTSGYGVSLFSSSISSEDILAVLQRDDVRQYL-----RQYL 1104
Query: 318 LGSRGTTA--GSSGDALGKALASIYSPDHSSN--NFSSSPSTPVG-----SPQGLAGTS 367
+G RG G+SGD +L S+ + SS ++ SS +G P GL GTS
Sbjct: 1105 MGPRGPPGPPGASGDG---SLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGLPGTS 1160
Score = 38.1 bits (87), Expect = 0.026
Identities = 55/225 (24%), Positives = 78/225 (34%), Gaps = 25/225 (11%)
Query: 46 GGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSL---SSSTFLGPGLGGKS 102
G S L +S S GS S SS + G+ ++ S S+ + S G G +
Sbjct: 1277 GDSRLLSTDASHSRGSSSSSHSS-----SVRRGSSYSSSMSTGGGGAGSLGAGGAFGEAA 1331
Query: 103 GERGAYAS-FGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRA 161
G+RG Y + G G G + G +G G L + G Y S
Sbjct: 1332 GDRGPYGTDIGPGGGYGAAAEGGMYAGN------GGLLGADFAGDLDYNELAVRVSESMQ 1385
Query: 162 ADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAPFYVADGSL 221
G L V+ PPG P PP + + +AY + + + G
Sbjct: 1386 RQGLLQGMAYTVQG-PPGQPGPQGPPGISKVF----SAYSNVTADLMDFFQTYGAIQGPP 1440
Query: 222 HPSAELWSPPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFG 266
E+ +P + GP G P PP GP G G G
Sbjct: 1441 GQKGEMGTPGPKGDRGP---AGPPGHPGPP--GPRGHKGEKGDKG 1480
Score = 34.3 bits (77), Expect = 0.37
Identities = 93/408 (22%), Positives = 122/408 (29%), Gaps = 46/408 (11%)
Query: 95 GPGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQY----- 149
GP G+ GERGA G G G + + + SPGP P G G
Sbjct: 636 GPPGSGEKGERGAAGEPGPHGPPG---VPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVG 692
Query: 150 YPSYSGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSST 209
P G G Q +K + G P P + + G P+
Sbjct: 693 LPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAG------ 746
Query: 210 YPAPFYVADGSLHPSAE--------LWSPPGQAG--FGPMLGGGSSPLPLPPGSGPVGSS 259
DG P E + PPG +G P L G P LP G G
Sbjct: 747 -------PDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIK 799
Query: 260 GSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLG 319
G G + E G + G P A PGA + P G +L
Sbjct: 800 GEPGAPGKIVTSE--GSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLP---GHQEVLN 854
Query: 320 SRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALS 379
+G G G G SI P P G P S+ +G PG
Sbjct: 855 LQG-PPGPPGPR-GPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPG 912
Query: 380 PSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRH 439
P G G ++ + + + G ++ P G G G
Sbjct: 913 PPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFG-LNLQGPPGPPGPQGPKGDKGDPGVP 971
Query: 440 AGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGR 487
L S P +G + ST + P PG PP S S G+
Sbjct: 972 GALGIPSGPSEGGSSSTMYVSGPPGPPGPPG-------PPGSISSSGQ 1012
Score = 34.3 bits (77), Expect = 0.37
Identities = 79/316 (25%), Positives = 107/316 (33%), Gaps = 48/316 (15%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTS-QYYPSYS 154
PG G SG+ G+ S A + + S +++ PGP P G+ GTS + S
Sbjct: 1111 PGPPGASGD-GSLLSLDY-AELSSRILSYMSSSGISIGLPGPPGPPGLPGTSYEELLSLL 1168
Query: 155 GSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGED-----YGRDATAYPSAKTPSST 209
S R G PPG+P +V+ S ED + + P P
Sbjct: 1169 RGSEFRGIVGPPGPPG------PPGIPGNVWSSISVEDLSSYLHTAGLSFIPGPPGPPGP 1222
Query: 210 YPAP-----------FYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPG-SGPVG 257
P P Y A+ S +EL S + G PPG GP G
Sbjct: 1223 -PGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVG-------PPGPPGPQG 1274
Query: 258 SSGSSSTFGGLHQHER-MGYQLHGAEVNGGLPSASSFSS--------APGATYGGVSSHT 308
G S H R H + V G +SS S+ G +G +
Sbjct: 1275 PPGDSRLLSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTGGGGAGSLGAGGAFGEAAGDR 1334
Query: 309 PPVSGADSLLGSRGTTA-GSSGDALGKALASIYSPDHSSNNFSSSPSTPV---GSPQGLA 364
P G G A G G L + ++ D N + S + G QG+A
Sbjct: 1335 GPYGTDIGPGGGYGAAAEGGMYAGNGGLLGADFAGDLDYNELAVRVSESMQRQGLLQGMA 1394
Query: 365 GTSQWPRAGAPGALSP 380
T Q P G PG P
Sbjct: 1395 YTVQGP-PGQPGPQGP 1409
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 51.2 bits (121), Expect = 3e-06
Identities = 99/371 (26%), Positives = 127/371 (34%), Gaps = 56/371 (15%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTS--QYYPSY 153
PG G G G GRD G + G L PGP G +G + P +
Sbjct: 1142 PGFPGSPGPMGIRGDQGRDGIPGPAGEKGETG--LLRAPPGPRGNPGAQGAKGDRGAPGF 1199
Query: 154 SGSSRRRAADGSLDTQPKKVRKV-----PPGLPSSVYPPSSGE---DYGRDATAYPSAKT 205
G R+ A G D P+ + PPGLP ++ P +G R + P
Sbjct: 1200 PGLPGRKGAMG--DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257
Query: 206 PSSTYPAPFYVADGSL-HPSAELWSPPGQAG-FGP--MLGGGSSP-LPLPPGS------- 253
P ++ GS+ HP + PPG AG GP LG +P LP P G
Sbjct: 1258 PPGSHVIGIKGDKGSMGHPGPK--GPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFP 1315
Query: 254 GPVGSSGSSSTFGGLHQHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSG 313
G G G+ G + +G + G G P S PG S P G
Sbjct: 1316 GVKGEKGNPGFLGSIGPPGPIGPK--GPPGVRGDPGTLKIISLPG------SPGPPGTPG 1367
Query: 314 ADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAG 373
+ G G G G+ LG P TP P G G G
Sbjct: 1368 EPGMQGEPG-PPGPPGN-LGPC------GPRGKPGKDGKPGTP--GPAGEKGNK-----G 1412
Query: 374 APGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLP----GHGALASGF 429
+ G P+ GL GL+ K D A R V T T +P G L SGF
Sbjct: 1413 SKGEPGPAGSDGLPGLKGKRGDSGSPATWTTRGF-VFTRHSQTTAIPSCPEGTVPLYSGF 1471
Query: 430 TGPMSLGGRHA 440
+ G + A
Sbjct: 1472 SFLFVQGNQRA 1482
Score = 50.1 bits (118), Expect = 7e-06
Identities = 51/178 (28%), Positives = 66/178 (37%), Gaps = 19/178 (10%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSY-- 153
PGL GK G+ G G + G G + + G + P G +G ++YY +Y
Sbjct: 293 PGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQE 352
Query: 154 SGSSRRRAADGSLDTQPKKVRKVPPGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
G G + + PPG+P S P S R A +P K P
Sbjct: 353 KGDEGTPGPPGPRGARGPQGPSGPPGVPGS---PGSSRPGLRGAPGWPGLKGSKGERGRP 409
Query: 214 FYVADGSLHPSAELWSPPGQAGFGPMLGGGSSPLPLPPG-----SGPVGSSGSSSTFG 266
A G+ P + PG AG P L G P P PPG GP G G G
Sbjct: 410 GKDAMGT--PGS-----PGCAG-SPGLPGSPGP-PGPPGDIVFRKGPPGDHGLPGYLG 458
Score = 41.2 bits (95), Expect = 0.003
Identities = 61/241 (25%), Positives = 81/241 (33%), Gaps = 23/241 (9%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PG G +G+ G G+ +G G L +PG G+ G P G
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGK----PGPHG 1119
Query: 156 SSRRRAADGSLDTQPKKVRKVP--PGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYPAP 213
+ G L P +R P PG P S P D GRD P+ + +
Sbjct: 1120 DLGFKGIKGLLG--PPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGET----- 1172
Query: 214 FYVADGSLH-PSAELWSPPGQAGFGPMLGGGSSPLPLPPGS-GPVGSSGSSSTFGGLHQH 271
G L P +P Q G G LP G+ G G G + G
Sbjct: 1173 -----GLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP 1227
Query: 272 ERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTA--GSSG 329
G + G N G P + APG G SH + G +G G G++G
Sbjct: 1228 GLPGAIIPGQTGNRGPPGSRGSPGAPGPP-GPPGSHVIGIKGDKGSMGHPGPKGPPGTAG 1286
Query: 330 D 330
D
Sbjct: 1287 D 1287
Score = 40.4 bits (93), Expect = 0.005
Identities = 84/336 (25%), Positives = 109/336 (32%), Gaps = 29/336 (8%)
Query: 62 GDQSSSSFD--PSRTFSEGTHFTESHSSLSSSTFLGPGLGGKSGERGAYASFGRDAGVGG 119
G Q F P T S+G S S PGL G G G Y G G
Sbjct: 73 GPQGPKGFPGLPGLTGSKGVRGISGLPGFSGS----PGLPGTPGNTGPYGLVGVPGCSGS 128
Query: 120 LTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSGSSRRRAADGSLDTQP-KKVRKVPP 178
+ GF L PG +G+KG D L P + PP
Sbjct: 129 KGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPP 188
Query: 179 GLPSSVYPPSSGEDYGRDATAYPSAKTPSST--YPAPFYVADGSLHPSAELWSPPGQAGF 236
G P V PP +G +P A P + + L PPG G
Sbjct: 189 GFPGPVGPPGPPGFFG-----FPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGT 243
Query: 237 GPM-LGGGSSPLPLPPGSGPVGSSGSSSTFG--GLHQHERMGYQLHGAEVNGGL---PSA 290
+ L G + L G G+ G G GL E G + GA + GL P
Sbjct: 244 VIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGL-PGESYGSE-KGAPGDPGLQGKPGK 301
Query: 291 SSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSGDALGKALASIYSPDHSSNNFS 350
PG+ + P + G D + G +G G G Y + +
Sbjct: 302 DGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKG-DIGPPGFRGPTEYYDTY--QEKGDEGT 358
Query: 351 SSPSTPVGS--PQGLAGTSQWPRAGAPGALSPSYDG 384
P P G+ PQG +G P G+PG+ P G
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVP--GSPGSSRPGLRG 392
Score = 33.9 bits (76), Expect = 0.49
Identities = 103/399 (25%), Positives = 123/399 (30%), Gaps = 93/399 (23%)
Query: 96 PGLGGKSGERGAYASFGRDAGVGGLTQAGFLSGELALNSPGPLSPSGMKGTSQYYPSYSG 155
PGL G G G GR G L G SPG +G+ G +P + G
Sbjct: 486 PGLPGLPGLHGVKGIPGRQGAAG-------LKG-----SPGSPGNTGLPG----FPGFPG 529
Query: 156 SSRRRAADGSLDT--QPKKVRKVP--PGLPSSVYPPSSGEDYGRDATAYPSAKTPSSTYP 211
+ G QP+ VP PGL P G D G T P K P
Sbjct: 530 AQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQ--PGRKGLD-GIPGT--PGVKG----LP 580
Query: 212 APFYVADGSLHPSAELWS--PPGQAGFGPMLGGGSSPLPLPPGSGPVGSSGSSSTFGGLH 269
P G L S E PPG G P G + P PPG GP G G T
Sbjct: 581 GP----KGELALSGEKGDQGPPGDPG-SPGSPGPAGPAG-PPGYGPQGEPGLQGT----- 629
Query: 270 QHERMGYQLHGAEVNGGLPSASSFSSAPGATYGGVSSHTPPVSGADSLLGSRGTTAGSSG 329
G+P A G G S + PV G G G
Sbjct: 630 ---------------QGVPGAPGPPGEAGPR--GELSVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 330 DALGKALASIYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPRAGAPGALSPSYDGGLHGL 389
+ +L P + P G G P G PG P D G G
Sbjct: 673 PGIPGSLGKCGDPG-------------LPGPDGEPGI---PGIGFPGPPGPKGDQGFPGT 716
Query: 390 QSKI--EDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTGPMSLGGRHA--GLVG- 444
+ + + E + G G+ +PG G GF G G H GL G
Sbjct: 717 KGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPG-GPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 445 ----GSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPP 479
G+ +GL G P QPG P PP
Sbjct: 776 PGLPGTPGNEGLDGP-------RGDPGQPGP-PGEQGPP 806
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,082,488
Number of Sequences: 37866
Number of extensions: 1924476
Number of successful extensions: 16678
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 884
Number of HSP's that attempted gapping in prelim test: 10913
Number of HSP's gapped (non-prelim): 4473
length of query: 654
length of database: 18,247,518
effective HSP length: 109
effective length of query: 545
effective length of database: 14,120,124
effective search space: 7695467580
effective search space used: 7695467580
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.