LMNA 24330

Name: LMNA	Sequence: fasta or formatted (664aa)		NCBI GI: 27436946
Description: lamin A/C isoform 1 precursor		Referenced in: Cytoskeleton Nucleus and Nucleolus Prenylation and Related Modifications
Other entries for this name: alt prot [634aa] lamin A/C isoform 3 alt prot [572aa] lamin A/C isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.9 59 2 C cysteine 0.8 5 1 D aspartate 5.4 36 2 E glutamate 10.7 71 3 F phenylalanine 1.2 8 1 G glycine 6.3 42 3 H histidine 2.0 13 4 I isoleucine 2.4 16 1 K lysine 6.0 40 2 L leucine 11.0 73 2 M methionine 1.5 10 1 N asparagine 3.2 21 1 P proline 2.3 15 2 Q glutamine 6.0 40 3 R arginine 9.6 64 2 S serine 10.4 69 3 T threonine 5.4 36 1 V valine 4.7 31 2 W tryptophan 0.6 4 1 Y tyrosine 1.7 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lamin A/C isoform 1 precursor LMNA 0.939 lamin A/C isoform 3 LMNA 0.845 lamin A/C isoform 2 LMNB1 0.466 lamin B1 LMNB2 0.459 lamin B2 DES 0.116 desmin PRPH 0.112 peripherin VIM 0.110 vimentin NEFL 0.104 neurofilament, light polypeptide 68kDa GFAP 0.100 glial fibrillary acidic protein isoform 1 NEFM 0.099 neurofilament, medium polypeptide 150kDa isoform 1 ... INA 0.097 internexin neuronal intermediate filament protein, a... GFAP 0.097 glial fibrillary acidic protein isoform 2 KRT8 0.094 keratin 8 KRT18 0.094 keratin 18 KRT18 0.094 keratin 18 KRT75 0.090 keratin 75 NEFH 0.088 neurofilament, heavy polypeptide 200kDa KRT5 0.087 keratin 5 KRT6C 0.084 keratin 6C KRT3 0.084 keratin 3 KRT6A 0.083 keratin 6A KRT6B 0.082 keratin 6B KRT4 0.082 keratin 4 KRT16 0.082 keratin 16 KRT78 0.081 keratin 5b KRT1 0.080 keratin 1 KRT7 0.080 keratin 7 KRT14 0.079 keratin 14 KRT80 0.077 keratin 80 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.