Guide to the Human Genome
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Name: KRT18 Sequence: fasta or formatted (430aa) NCBI GI: 40354195
Description:

keratin 18

Referenced in:

Keratins

Other entries for this name:
alt mRNA [430aa] keratin 18
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         38           2
 C cysteine            0.0          0           0
 D aspartate           5.6         24           2
 E glutamate          10.0         43           3
 F phenylalanine       1.9          8           1
 G glycine             6.3         27           2
 H histidine           1.4          6           1
 I isoleucine          5.3         23           2
 K lysine              4.9         21           2
 L leucine            10.5         45           2
 M methionine          2.3         10           1
 N asparagine          4.2         18           1
 P proline             0.9          4           1
 Q glutamine           5.6         24           2
 R arginine            8.1         35           2
 S serine              8.6         37           2
 T threonine           7.0         30           3
 V valine              5.6         24           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 18 
KRT18                 1.000   keratin 18 
KRT14                 0.410   keratin 14 
KRT16                 0.394   keratin 16 
KRT15                 0.389   keratin 15 
KRT19                 0.388   keratin 19 
KRT17                 0.382   keratin 17 
KRT10                 0.376   keratin 10 
KRT13                 0.374   keratin 13 isoform a 
KRT13                 0.373   keratin 13 isoform b 
KRT36                 0.362   keratin 36 
KRT24                 0.361   keratin 24 
KRT20                 0.356   keratin 20 
KRT12                 0.349   keratin 12 
KRT35                 0.344   keratin 35 
FLJ40504              0.343   hypothetical protein LOC284085 
KRT33A                0.337   keratin 33A 
KRT31                 0.337   keratin 31 
KRT32                 0.334   keratin 32 
KRT33B                0.328   type I hair keratin 3B 
KRT28                 0.325   keratin 25D 
KRT27                 0.322   keratin 27 
KRT34                 0.314   keratin 34 
KRT25                 0.308   keratin 25 
KRT9                  0.308   keratin 9 
KRT39                 0.296   type I hair keratin KA35 
KRT26                 0.294   keratin 26 
KRT23                 0.289   keratin 23 
KRT40                 0.285   type I hair keratin KA36 
KRT38                 0.283   keratin 38 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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