Guide to the Human Genome
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Name: KRT16 Sequence: fasta or formatted (473aa) NCBI GI: 24430192
Description:

keratin 16

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         31           2
 C cysteine            1.3          6           1
 D aspartate           4.2         20           2
 E glutamate           9.5         45           3
 F phenylalanine       2.7         13           1
 G glycine            12.1         57           3
 H histidine           0.6          3           1
 I isoleucine          4.0         19           2
 K lysine              3.6         17           1
 L leucine            10.6         50           2
 M methionine          2.3         11           1
 N asparagine          3.0         14           1
 P proline             1.3          6           1
 Q glutamine           6.8         32           2
 R arginine            7.0         33           2
 S serine             12.9         61           7
 T threonine           4.2         20           2
 V valine              4.0         19           1
 W tryptophan          0.4          2           1
 Y tyrosine            3.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 16 
KRT14                 0.831   keratin 14 
KRT17                 0.621   keratin 17 
KRT15                 0.591   keratin 15 
KRT13                 0.589   keratin 13 isoform a 
KRT13                 0.579   keratin 13 isoform b 
KRT10                 0.519   keratin 10 
KRT19                 0.516   keratin 19 
KRT12                 0.497   keratin 12 
KRT24                 0.463   keratin 24 
KRT9                  0.455   keratin 9 
KRT36                 0.455   keratin 36 
KRT27                 0.443   keratin 27 
KRT25                 0.430   keratin 25 
KRT28                 0.428   keratin 25D 
KRT35                 0.422   keratin 35 
KRT26                 0.404   keratin 26 
KRT31                 0.391   keratin 31 
KRT33A                0.390   keratin 33A 
KRT33B                0.386   type I hair keratin 3B 
KRT20                 0.383   keratin 20 
KRT34                 0.378   keratin 34 
KRT32                 0.375   keratin 32 
KRT18                 0.351   keratin 18 
KRT18                 0.351   keratin 18 
KRT40                 0.345   type I hair keratin KA36 
KRT38                 0.328   keratin 38 
KRT23                 0.327   keratin 23 
KRT39                 0.322   type I hair keratin KA35 
KRT37                 0.320   keratin 37 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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