Guide to the Human Genome
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Name: LOC100294115 Sequence: fasta or formatted (281aa) NCBI GI: 239513955
Description:

PREDICTED: similar to major histocompatibility complex, class II, DR beta 5

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         14           2
 C cysteine            2.1          6           1
 D aspartate           3.6         10           1
 E glutamate           7.1         20           2
 F phenylalanine       3.6         10           1
 G glycine             6.8         19           2
 H histidine           2.5          7           2
 I isoleucine          4.6         13           2
 K lysine              3.2          9           2
 L leucine            10.0         28           2
 M methionine          2.5          7           1
 N asparagine          2.8          8           1
 P proline             4.6         13           1
 Q glutamine           5.0         14           1
 R arginine            9.3         26           2
 S serine              7.5         21           1
 T threonine           7.1         20           2
 V valine              8.2         23           2
 W tryptophan          2.1          6           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to major histocompatibility comp... 
LOC100294278          1.000   PREDICTED: similar to major histocompatibility comp...
LOC100293977          0.995   PREDICTED: similar to major histocompatibility comp...
LOC100133583          0.995   PREDICTED: similar to major histocompatibility comp...
LOC100294191          0.995   PREDICTED: similar to major histocompatibility comp...
LOC100294318          0.923   PREDICTED: similar to major histocompatibility comp...
LOC100133583          0.852   PREDICTED: similar to major histocompatibility comp...
LOC100294318          0.841   PREDICTED: similar to major histocompatibility comp...
HLA-DQB1              0.788   major histocompatibility complex, class II, DQ beta...
HLA-DRB5              0.581   major histocompatibility complex, class II, DR beta ...
LOC100290966          0.580   PREDICTED: hypothetical protein XP_002346811 
LOC100294468          0.576   PREDICTED: similar to HLA class II histocompatibili...
HLA-DPB1              0.574   major histocompatibility complex, class II, DP beta ...
HLA-DRB1              0.574   major histocompatibility complex, class II, DR beta...
LOC100294189          0.572   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.572   PREDICTED: similar to HLA class II histocompatibili...
LOC100294276          0.569   PREDICTED: similar to major histocompatibility comp...
LOC100294276          0.556   PREDICTED: similar to major histocompatibility comp...
HLA-DRB4              0.554   major histocompatibility complex, class II, DR beta ...
LOC100294275          0.554   PREDICTED: similar to major histocompatibility comp...
HLA-DRB3              0.550   major histocompatibility complex, class II, DR beta ...
LOC100294275          0.545   PREDICTED: similar to major histocompatibility comp...
LOC100294189          0.534   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.534   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB4              0.514   PREDICTED: major histocompatibility complex, class ...
HLA-DOB               0.503   major histocompatibility complex, class II, DO beta p...
LOC100294036          0.473   PREDICTED: similar to HLA class II histocompatibili...
LOC100133811          0.410   PREDICTED: similar to HLA class II histocompatibili...
LOC651845             0.298   PREDICTED: similar to MHC class II antigen 
LOC100133661          0.186   PREDICTED: similar to MHC class II antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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