Guide to the Human Genome
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Name: LRG1 Sequence: fasta or formatted (347aa) NCBI GI: 16418467
Description:

leucine-rich alpha-2-glycoprotein 1

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         24           2
 C cysteine            1.2          4           1
 D aspartate           5.5         19           1
 E glutamate           4.0         14           1
 F phenylalanine       3.2         11           2
 G glycine             7.5         26           2
 H histidine           2.3          8           1
 I isoleucine          1.4          5           1
 K lysine              3.7         13           1
 L leucine            20.7         72           5
 M methionine          1.2          4           1
 N asparagine          4.9         17           2
 P proline             7.2         25           2
 Q glutamine           6.3         22           1
 R arginine            5.2         18           1
 S serine              7.8         27           2
 T threonine           3.7         13           1
 V valine              4.3         15           1
 W tryptophan          2.0          7           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine-rich alpha-2-glycoprotein 1 
CPN2                  0.162   carboxypeptidase N, polypeptide 2, 83kD 
LRRC15                0.135   leucine rich repeat containing 15 isoform a 
LRRC15                0.135   leucine rich repeat containing 15 isoform b 
CHADL                 0.132   chondroadherin-like 
LRRTM3                0.129   leucine rich repeat transmembrane neuronal 3 
IGFALS                0.126   insulin-like growth factor binding protein, acid la...
IGFALS                0.126   insulin-like growth factor binding protein, acid labi...
LRRTM4                0.125   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.125   leucine rich repeat transmembrane neuronal 4 isofor...
GP1BA                 0.122   platelet glycoprotein Ib alpha polypeptide precurso...
RTN4RL2               0.120   reticulon 4 receptor-like 2 
NYX                   0.119   nyctalopin precursor 
GP5                   0.113   glycoprotein V (platelet) 
CHAD                  0.111   chondroadherin precursor 
FLRT3                 0.111   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.111   fibronectin leucine rich transmembrane protein 3 prec...
KIAA0644              0.108   hypothetical protein LOC9865 
LRRTM1                0.107   leucine rich repeat transmembrane neuronal 1 
FLRT1                 0.107   fibronectin leucine rich transmembrane protein 1 [Ho...
RTN4R                 0.105   reticulon 4 receptor precursor 
LRRTM2                0.104   leucine rich repeat transmembrane neuronal 2 
PODNL1                0.102   podocan-like 1 isoform 2 
PODNL1                0.102   podocan-like 1 isoform 1 
LGR6                  0.101   leucine-rich repeat-containing G protein-coupled rec...
LGR4                  0.099   leucine-rich repeat-containing G protein-coupled re...
FLRT2                 0.099   fibronectin leucine rich transmembrane protein 2 [Hom...
RTN4RL1               0.098   reticulon 4 receptor-like 1 
LRIG2                 0.098   leucine-rich repeats and immunoglobulin-like domains ...
VASN                  0.098   slit-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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