Guide to the Human Genome
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Name: LRDD Sequence: fasta or formatted (753aa) NCBI GI: 61742782
Description:

leucine rich repeat and death domain containing protein isoform 2

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [910aa] leucine rich repeat and death domain containing protein isoform 1
alt prot [893aa] leucine rich repeat and death domain containing protein isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         69           2
 C cysteine            1.6         12           1
 D aspartate           4.6         35           2
 E glutamate           6.2         47           3
 F phenylalanine       2.8         21           2
 G glycine             6.8         51           2
 H histidine           2.1         16           1
 I isoleucine          1.9         14           1
 K lysine              1.3         10           1
 L leucine            16.9        127           3
 M methionine          1.1          8           1
 N asparagine          2.3         17           1
 P proline             8.9         67           2
 Q glutamine           4.9         37           2
 R arginine            8.8         66           3
 S serine              6.0         45           2
 T threonine           4.4         33           3
 V valine              7.3         55           3
 W tryptophan          1.6         12           1
 Y tyrosine            1.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat and death domain containing prot... 
LRDD                  0.994   leucine rich repeat and death domain containing prot...
LRDD                  0.965   leucine rich repeat and death domain containing prot...
LRCH4                 0.054   leucine-rich repeats and calponin homology (CH) doma...
LRRC58                0.049   leucine rich repeat containing 58 
LRRC8E                0.047   leucine rich repeat containing 8 family, member E [H...
LRRC40                0.047   leucine rich repeat containing 40 
ERBB2IP               0.045   ERBB2 interacting protein isoform 7 
ERBB2IP               0.045   ERBB2 interacting protein isoform 2 
MFHAS1                0.045   malignant fibrous histiocytoma amplified sequence 1...
LRRC7                 0.045   leucine rich repeat containing 7 
SCRIB                 0.045   scribble isoform b 
SCRIB                 0.045   scribble isoform a 
LRRC1                 0.044   leucine rich repeat containing 1 
LRRC8A                0.042   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.042   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.042   leucine rich repeat containing 8 family, member A [...
LRCH2                 0.042   leucine-rich repeats and calponin homology (CH) dom...
LRRC30                0.042   leucine rich repeat containing 30 
LRRC8C                0.042   leucine rich repeat containing 8 family, member C [H...
ANK3                  0.041   ankyrin 3 isoform 2 
LRCH1                 0.041   leucine-rich repeats and calponin homology (CH) doma...
LRRC28                0.040   leucine rich repeat containing 28 
LOC401387             0.040   leucine-rich repeat and death domain-containing pro...
ANK1                  0.040   ankyrin 1 isoform 9 
ANK1                  0.040   ankyrin 1 isoform 1 
ANK1                  0.040   ankyrin 1 isoform 3 
ANK1                  0.040   ankyrin 1 isoform 2 
ANK1                  0.040   ankyrin 1 isoform 4 
ANK2                  0.040   ankyrin 2 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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