Guide to the Human Genome
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Name: LRRC57 Sequence: fasta or formatted (239aa) NCBI GI: 194394161
Description:

leucine rich repeat containing 57

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          9           1
 C cysteine            2.5          6           2
 D aspartate           3.8          9           1
 E glutamate           6.7         16           2
 F phenylalanine       2.9          7           1
 G glycine             4.2         10           1
 H histidine           1.3          3           1
 I isoleucine          5.9         14           1
 K lysine              7.9         19           3
 L leucine            19.7         47           2
 M methionine          1.7          4           1
 N asparagine          7.5         18           3
 P proline             4.2         10           2
 Q glutamine           5.4         13           1
 R arginine            4.2         10           1
 S serine              9.2         22           1
 T threonine           5.0         12           1
 V valine              3.3          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 57 
LRRC1                 0.177   leucine rich repeat containing 1 
SHOC2                 0.173   soc-2 suppressor of clear homolog 
LOC401387             0.170   leucine-rich repeat and death domain-containing pro...
LRCH4                 0.168   leucine-rich repeats and calponin homology (CH) doma...
LRRC40                0.159   leucine rich repeat containing 40 
LRRC7                 0.152   leucine rich repeat containing 7 
LRRC69                0.152   leucine rich repeat containing 69 
MFHAS1                0.150   malignant fibrous histiocytoma amplified sequence 1...
SCRIB                 0.145   scribble isoform b 
SCRIB                 0.145   scribble isoform a 
FLII                  0.145   flightless I homolog 
LRRIQ4                0.143   leucine-rich repeats and IQ motif containing 4 [Hom...
ERBB2IP               0.141   ERBB2 interacting protein isoform 7 
ERBB2IP               0.141   ERBB2 interacting protein isoform 2 
LRRC8A                0.141   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.141   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.141   leucine rich repeat containing 8 family, member A [...
LRDD                  0.136   leucine rich repeat and death domain containing prot...
LRDD                  0.136   leucine rich repeat and death domain containing prot...
LRRC2                 0.136   leucine rich repeat containing 2 
LRRC2                 0.136   leucine rich repeat containing 2 
LRRC58                0.136   leucine rich repeat containing 58 
LRCH2                 0.134   leucine-rich repeats and calponin homology (CH) dom...
LRCH3                 0.134   leucine-rich repeats and calponin homology (CH) doma...
RSU1                  0.132   ras suppressor protein 1 isoform 1 
LRRC28                0.130   leucine rich repeat containing 28 
LRRC18                0.130   leucine rich repeat containing 18 
LRRC30                0.130   leucine rich repeat containing 30 
LRSAM1                0.127   leucine rich repeat and sterile alpha motif containi...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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