Guide to the Human Genome
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Name: LRRC10 Sequence: fasta or formatted (277aa) NCBI GI: 63003903
Description:

leucine rich repeat containing 10

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         15           1
 C cysteine            2.9          8           1
 D aspartate           4.7         13           1
 E glutamate           5.1         14           2
 F phenylalanine       2.9          8           1
 G glycine             3.2          9           1
 H histidine           2.2          6           1
 I isoleucine          3.2          9           1
 K lysine              3.6         10           1
 L leucine            19.1         53           2
 M methionine          1.4          4           1
 N asparagine          6.1         17           2
 P proline             7.6         21           2
 Q glutamine           4.7         13           1
 R arginine            7.9         22           2
 S serine              5.8         16           2
 T threonine           3.6         10           1
 V valine              6.9         19           2
 W tryptophan          1.4          4           1
 Y tyrosine            2.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 10 
LOC390205             0.311   leucine rich repeat containing 10-like 
LRRC30                0.149   leucine rich repeat containing 30 
MFHAS1                0.142   malignant fibrous histiocytoma amplified sequence 1...
LRRC39                0.142   leucine rich repeat containing 39 
LRRIQ4                0.140   leucine-rich repeats and IQ motif containing 4 [Hom...
LRRC7                 0.138   leucine rich repeat containing 7 
LOC401387             0.134   leucine-rich repeat and death domain-containing pro...
LRRC1                 0.132   leucine rich repeat containing 1 
SCRIB                 0.128   scribble isoform b 
SCRIB                 0.128   scribble isoform a 
SHOC2                 0.125   soc-2 suppressor of clear homolog 
ERBB2IP               0.125   ERBB2 interacting protein isoform 7 
ERBB2IP               0.125   ERBB2 interacting protein isoform 2 
LRRC40                0.125   leucine rich repeat containing 40 
LRRC69                0.117   leucine rich repeat containing 69 
LRRC8A                0.117   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.117   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.117   leucine rich repeat containing 8 family, member A [...
LRCH4                 0.110   leucine-rich repeats and calponin homology (CH) doma...
LRRC2                 0.108   leucine rich repeat containing 2 
LRRC2                 0.108   leucine rich repeat containing 2 
LRCH3                 0.106   leucine-rich repeats and calponin homology (CH) doma...
LRDD                  0.102   leucine rich repeat and death domain containing prot...
LRDD                  0.102   leucine rich repeat and death domain containing prot...
PHLPP1                0.101   PH domain and leucine rich repeat protein phosphatas...
LRRC58                0.101   leucine rich repeat containing 58 
LRCH2                 0.101   leucine-rich repeats and calponin homology (CH) dom...
LRCH1                 0.101   leucine-rich repeats and calponin homology (CH) doma...
LRRC8D                0.099   leucine rich repeat containing 8 family, member D [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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