Guide to the Human Genome
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Name: LRRC8E Sequence: fasta or formatted (796aa) NCBI GI: 40217803
Description:

leucine rich repeat containing 8 family, member E

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         54           3
 C cysteine            2.6         21           2
 D aspartate           2.8         22           1
 E glutamate           8.9         71           3
 F phenylalanine       4.5         36           2
 G glycine             5.4         43           2
 H histidine           3.1         25           1
 I isoleucine          3.5         28           2
 K lysine              6.0         48           2
 L leucine            17.1        136           3
 M methionine          1.5         12           1
 N asparagine          3.0         24           2
 P proline             4.5         36           2
 Q glutamine           4.5         36           2
 R arginine            4.9         39           1
 S serine              5.8         46           2
 T threonine           4.0         32           2
 V valine              6.9         55           2
 W tryptophan          1.1          9           2
 Y tyrosine            2.9         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 8 family, member E [H... 
LRRC8C                0.628   leucine rich repeat containing 8 family, member C [H...
LRRC8A                0.532   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.532   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.532   leucine rich repeat containing 8 family, member A [...
LRRC8D                0.499   leucine rich repeat containing 8 family, member D [...
LRRC8D                0.499   leucine rich repeat containing 8 family, member D [H...
LRRC8B                0.456   leucine rich repeat containing 8 family, member B [...
LRRC8B                0.456   leucine rich repeat containing 8 family, member B [H...
ERBB2IP               0.061   ERBB2 interacting protein isoform 7 
ERBB2IP               0.061   ERBB2 interacting protein isoform 2 
SHOC2                 0.061   soc-2 suppressor of clear homolog 
LRRIQ4                0.057   leucine-rich repeats and IQ motif containing 4 [Hom...
LRRC7                 0.057   leucine rich repeat containing 7 
LRRC1                 0.054   leucine rich repeat containing 1 
MFHAS1                0.052   malignant fibrous histiocytoma amplified sequence 1...
SCRIB                 0.052   scribble isoform b 
SCRIB                 0.052   scribble isoform a 
LRDD                  0.051   leucine rich repeat and death domain containing prot...
LRDD                  0.051   leucine rich repeat and death domain containing prot...
LRRC28                0.048   leucine rich repeat containing 28 
RSU1                  0.045   ras suppressor protein 1 isoform 1 
LOC401387             0.045   leucine-rich repeat and death domain-containing pro...
LRDD                  0.045   leucine rich repeat and death domain containing prot...
RSU1                  0.043   ras suppressor protein 1 isoform 2 
LRRC69                0.042   leucine rich repeat containing 69 
LRRC40                0.042   leucine rich repeat containing 40 
LRRC39                0.040   leucine rich repeat containing 39 
LRRC30                0.039   leucine rich repeat containing 30 
FLII                  0.038   flightless I homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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