Guide to the Human Genome
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Name: TNRC6B Sequence: fasta or formatted (1833aa) NCBI GI: 241982729
Description:

trinucleotide repeat containing 6B isoform 1

Referenced in:

Additional Structural Proteins

Other entries for this name:
alt prot [1723aa] trinucleotide repeat containing 6B isoform 2
alt prot [1029aa] trinucleotide repeat containing 6B isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9        109           3
 C cysteine            0.8         15           1
 D aspartate           4.7         86           2
 E glutamate           4.3         78           4
 F phenylalanine       1.6         29           1
 G glycine            11.8        216           3
 H histidine           1.5         27           1
 I isoleucine          1.9         34           2
 K lysine              5.2         96           4
 L leucine             5.5        100           3
 M methionine          2.0         37           2
 N asparagine          7.6        140           3
 P proline             9.8        179           6
 Q glutamine           6.8        124           8
 R arginine            3.2         58           2
 S serine             13.5        247           4
 T threonine           6.3        115           2
 V valine              3.5         64           2
 W tryptophan          3.4         62           1
 Y tyrosine            0.9         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trinucleotide repeat containing 6B isoform 1 
TNRC6B                0.855   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.423   trinucleotide repeat containing 6B isoform 3 
TNRC6A                0.281   trinucleotide repeat containing 6A 
TNRC6C                0.234   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.224   trinucleotide repeat containing 6C isoform 2 
DSPP                  0.020   dentin sialophosphoprotein preproprotein 
HRNR                  0.018   hornerin 
LOC100292655          0.015   PREDICTED: similar to armadillo repeat containing, ...
FLG2                  0.013   filaggrin family member 2 
ARID1B                0.012   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.012   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100133915          0.011   PREDICTED: hypothetical protein 
MUC21                 0.011   mucin 21 
FOXP2                 0.011   forkhead box P2 isoform I 
FLG                   0.010   filaggrin 
FOXP2                 0.010   forkhead box P2 isoform II 
FOXP2                 0.010   forkhead box P2 isoform III 
FGA                   0.010   fibrinogen, alpha polypeptide isoform alpha prepropr...
FGA                   0.010   fibrinogen, alpha polypeptide isoform alpha-E preprop...
ARID1B                0.010   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
PRB1                  0.009   proline-rich protein BstNI subfamily 1 isoform 1 pre...
MED12                 0.009   mediator complex subunit 12 
PRB2                  0.009   proline-rich protein BstNI subfamily 2 
MLL2                  0.009   myeloid/lymphoid or mixed-lineage leukemia 2 
HNRNPUL1              0.009   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.009   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
IRS4                  0.009   insulin receptor substrate 4 
MAML2                 0.009   mastermind-like 2 
PRB4                  0.008   proline-rich protein BstNI subfamily 4 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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