Guide to the Human Genome
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Name: TNRC6C Sequence: fasta or formatted (1726aa) NCBI GI: 217416332
Description:

trinucleotide repeat containing 6C isoform 1

Referenced in:

Additional Structural Proteins

Other entries for this name:
alt prot [1690aa] trinucleotide repeat containing 6C isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        135           4
 C cysteine            0.6         10           1
 D aspartate           3.8         65           2
 E glutamate           3.4         58           3
 F phenylalanine       1.0         18           1
 G glycine            11.8        204           3
 H histidine           2.0         35           1
 I isoleucine          2.6         45           2
 K lysine              3.7         64           2
 L leucine             6.6        114           2
 M methionine          2.0         34           1
 N asparagine          7.9        136           2
 P proline             9.3        160           8
 Q glutamine           6.0        104           3
 R arginine            2.8         48           3
 S serine             14.3        247           3
 T threonine           6.5        113           9
 V valine              3.9         68           2
 W tryptophan          3.3         57           1
 Y tyrosine            0.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.967   trinucleotide repeat containing 6C isoform 2 
TNRC6A                0.333   trinucleotide repeat containing 6A 
TNRC6B                0.252   trinucleotide repeat containing 6B isoform 1 
TNRC6B                0.177   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.154   trinucleotide repeat containing 6B isoform 3 
HRNR                  0.023   hornerin 
FLG2                  0.016   filaggrin family member 2 
DSPP                  0.015   dentin sialophosphoprotein preproprotein 
LOC100133915          0.013   PREDICTED: hypothetical protein 
MED15                 0.013   mediator complex subunit 15 isoform a 
MUC21                 0.012   mucin 21 
MED15                 0.012   mediator complex subunit 15 isoform b 
DMKN                  0.010   dermokine isoform 5 precursor 
DMKN                  0.010   dermokine isoform 4 precursor 
DMKN                  0.010   dermokine isoform 3 precursor 
DMKN                  0.010   dermokine isoform 2 precursor 
MLL2                  0.010   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC100292655          0.009   PREDICTED: similar to armadillo repeat containing, ...
NOTCH1                0.008   notch1 preproprotein 
MUC12                 0.008   PREDICTED: mucin 12 
ARID1A                0.008   AT rich interactive domain 1A isoform a 
ARID1A                0.008   AT rich interactive domain 1A isoform b 
FOXP1                 0.008   forkhead box P1 isoform 1 
PHC1                  0.008   polyhomeotic 1-like 
LOR                   0.008   loricrin 
ZNF853                0.008   zinc finger protein 853 
MAML2                 0.008   mastermind-like 2 
COL5A3                0.008   collagen, type V, alpha 3 preproprotein 
COL1A2                0.008   alpha 2 type I collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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