TNRC6C 26139

Name: TNRC6C	Sequence: fasta or formatted (1690aa)		NCBI GI: 33413425
Description: trinucleotide repeat containing 6C isoform 2		Referenced in: Additional Structural Proteins
Other entries for this name: alt prot [1726aa] trinucleotide repeat containing 6C isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.6 129 4 C cysteine 0.6 10 1 D aspartate 3.8 65 2 E glutamate 3.4 58 3 F phenylalanine 1.0 17 1 G glycine 12.0 203 3 H histidine 2.1 35 1 I isoleucine 2.6 44 2 K lysine 3.8 65 2 L leucine 6.6 112 2 M methionine 2.0 34 1 N asparagine 8.0 135 2 P proline 9.2 155 8 Q glutamine 6.1 103 3 R arginine 2.9 49 3 S serine 13.7 231 3 T threonine 6.6 112 9 V valine 4.0 67 2 W tryptophan 3.3 56 1 Y tyrosine 0.6 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 trinucleotide repeat containing 6C isoform 2 TNRC6C 0.991 trinucleotide repeat containing 6C isoform 1 TNRC6A 0.328 trinucleotide repeat containing 6A TNRC6B 0.246 trinucleotide repeat containing 6B isoform 1 TNRC6B 0.210 trinucleotide repeat containing 6B isoform 2 TNRC6B 0.147 trinucleotide repeat containing 6B isoform 3 HRNR 0.022 hornerin FLG2 0.017 filaggrin family member 2 DSPP 0.015 dentin sialophosphoprotein preproprotein MED15 0.012 mediator complex subunit 15 isoform a MUC21 0.012 mucin 21 LOC100133915 0.012 PREDICTED: hypothetical protein MED15 0.011 mediator complex subunit 15 isoform b DMKN 0.010 dermokine isoform 5 precursor DMKN 0.010 dermokine isoform 4 precursor DMKN 0.010 dermokine isoform 3 precursor DMKN 0.010 dermokine isoform 2 precursor MLL2 0.010 myeloid/lymphoid or mixed-lineage leukemia 2 LOC100292655 0.009 PREDICTED: similar to armadillo repeat containing, ... NOTCH1 0.009 notch1 preproprotein FOXP1 0.008 forkhead box P1 isoform 1 PHC1 0.008 polyhomeotic 1-like MUC12 0.008 PREDICTED: mucin 12 LOR 0.008 loricrin ZNF853 0.008 zinc finger protein 853 MAML2 0.008 mastermind-like 2 COL5A3 0.008 collagen, type V, alpha 3 preproprotein COL1A2 0.008 alpha 2 type I collagen LOC100287737 0.008 PREDICTED: hypothetical protein XP_002343203 PAXIP1 0.007 PAX interacting protein 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.