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Search of human proteins with 239757478
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
(53 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 124 1e-29
gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] 124 1e-29
gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] 124 1e-29
gi|16905373 beta-defensin 118 [Homo sapiens] 59 1e-09
gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 44 4e-05
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 39 9e-04
gi|83582798 beta-defensin 115 [Homo sapiens] 38 0.002
gi|83582802 beta-defensin 128 [Homo sapiens] 35 0.013
gi|116517226 beta-defensin 135 [Homo sapiens] 33 0.037
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 33 0.048
gi|58865339 defensin, beta 121 [Homo sapiens] 31 0.24
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 30 0.31
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 30 0.31
gi|222352166 nel-like 1 isoform 2 precursor [Homo sapiens] 30 0.53
gi|222352164 nel-like 1 isoform 1 precursor [Homo sapiens] 30 0.53
gi|86788132 EGF-containing fibulin-like extracellular matrix pro... 29 0.70
gi|86788015 EGF-containing fibulin-like extracellular matrix pro... 29 0.70
gi|9665262 EGF-containing fibulin-like extracellular matrix prot... 29 0.70
gi|38490568 keratin associated protein 10-4 [Homo sapiens] 29 0.91
gi|38490587 keratin associated protein 10-12 [Homo sapiens] 29 0.91
gi|38490571 keratin associated protein 10-7 [Homo sapiens] 29 0.91
gi|148833508 notch1 preproprotein [Homo sapiens] 28 1.2
gi|22748617 defensin, beta 105A precursor [Homo sapiens] 28 1.2
gi|103485141 defensin, beta 105B precursor [Homo sapiens] 28 1.2
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 28 1.6
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 28 1.6
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 28 1.6
gi|17978491 CD97 antigen isoform 1 precursor [Homo sapiens] 28 1.6
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 28 1.6
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 28 1.6
>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 124 bits (312), Expect = 1e-29
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS 53
MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS
Sbjct: 1 MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS 53
>gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 124 bits (312), Expect = 1e-29
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS 53
MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS
Sbjct: 1 MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS 53
>gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 124 bits (312), Expect = 1e-29
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS 53
MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS
Sbjct: 1 MPKICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS 53
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 58.5 bits (140), Expect = 1e-09
Identities = 24/38 (63%), Positives = 25/38 (65%)
Query: 15 QKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTD 52
+K CW GHCRK CK GE VK CKN CCIPSN D
Sbjct: 24 EKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCIPSNED 61
>gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]
Length = 99
Score = 43.5 bits (101), Expect = 4e-05
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 10 SVCRSQKSCW--IIKGHCRKNCKPGEQVKKPCKNGDYCCI 47
+V K CW ++GHCRK C+ E + C+NG YCC+
Sbjct: 16 TVTEQLKKCWNNYVQGHCRKICRVNEVPEALCENGRYCCL 55
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 38.9 bits (89), Expect = 9e-04
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPS 49
CW+ GHCR CK GE C+N CC+PS
Sbjct: 23 CWM-DGHCRLLCKDGEDSIIRCRNRKRCCVPS 53
>gi|83582798 beta-defensin 115 [Homo sapiens]
Length = 88
Score = 37.7 bits (86), Expect = 0.002
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTD 52
+ C+ G CRK+CK E+ K+ C CC+P D
Sbjct: 36 RRCYYGTGRCRKSCKEIERKKEKCGEKHICCVPKEKD 72
>gi|83582802 beta-defensin 128 [Homo sapiens]
Length = 93
Score = 35.0 bits (79), Expect = 0.013
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 8 LSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46
L+ R +K + G+CRK CK GE+ + C +G CC
Sbjct: 15 LTDGARLKKCFNKVTGYCRKKCKVGERYEIGCLSGKLCC 53
>gi|116517226 beta-defensin 135 [Homo sapiens]
Length = 77
Score = 33.5 bits (75), Expect = 0.037
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 17 SCWIIKGHCRKNCKPGEQVKKPCKNGDYCCI 47
SCW ++G CR C EQ + C CC+
Sbjct: 36 SCWRLQGTCRPKCLKNEQYRILCDTIHLCCV 66
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 33.1 bits (74), Expect = 0.048
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCI 47
CW + G CR C E+V C N CC+
Sbjct: 25 CWNLYGKCRYRCSKKERVYVYCINNKMCCV 54
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 30.8 bits (68), Expect = 0.24
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCI 47
CW G CR CK E CK CC+
Sbjct: 23 CWGKSGRCRTTCKESEVYYILCKTEAKCCV 52
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 4 ICTDLSSVCRSQ---KSCWIIK-GHCRKNCKPGEQVKKPCKNGDYCCI 47
IC L+ V + + CW GHCR+ C E+ C+N CCI
Sbjct: 10 ICGLLTRVTKGSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCCI 57
>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
Length = 84
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPS 49
C G CR +CK EQ C+N CC+ S
Sbjct: 28 CMGNSGICRASCKKNEQPYLYCRNCQSCCLQS 59
>gi|222352166 nel-like 1 isoform 2 precursor [Homo sapiens]
Length = 763
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 3 KICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46
K C D V R S W + G CK CKNG CC
Sbjct: 718 KTCLDSYGVSRLSGSVWTMAGSPCTTCK--------CKNGRVCC 753
>gi|222352164 nel-like 1 isoform 1 precursor [Homo sapiens]
Length = 810
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 3 KICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46
K C D V R S W + G CK CKNG CC
Sbjct: 765 KTCLDSYGVSRLSGSVWTMAGSPCTTCK--------CKNGRVCC 800
>gi|86788132 EGF-containing fibulin-like extracellular matrix
protein 1 precursor [Homo sapiens]
Length = 493
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 5 CTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVK-KPCKNGDYCCIP 48
CT + CR+ + C ++G C PG Q + + C + D C IP
Sbjct: 177 CTAGTHNCRADQVCINLRGSFACQCPPGYQKRGEQCVDIDECTIP 221
>gi|86788015 EGF-containing fibulin-like extracellular matrix
protein 1 precursor [Homo sapiens]
Length = 493
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 5 CTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVK-KPCKNGDYCCIP 48
CT + CR+ + C ++G C PG Q + + C + D C IP
Sbjct: 177 CTAGTHNCRADQVCINLRGSFACQCPPGYQKRGEQCVDIDECTIP 221
>gi|9665262 EGF-containing fibulin-like extracellular matrix protein
1 precursor [Homo sapiens]
Length = 493
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 5 CTDLSSVCRSQKSCWIIKGHCRKNCKPGEQVK-KPCKNGDYCCIP 48
CT + CR+ + C ++G C PG Q + + C + D C IP
Sbjct: 177 CTAGTHNCRADQVCINLRGSFACQCPPGYQKRGEQCVDIDECTIP 221
>gi|38490568 keratin associated protein 10-4 [Homo sapiens]
Length = 401
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 4 ICTDLSSVCRSQKSC--WIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS 53
+C+ +SS C Q SC + C+ C+P PC++G CI S T S
Sbjct: 164 VCSGISSSCCQQSSCVSCVSSPCCQAVCEP-----SPCQSG---CISSCTPS 207
>gi|38490587 keratin associated protein 10-12 [Homo sapiens]
Length = 245
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 18/61 (29%)
Query: 4 ICTDLSSVCRSQKSCW-------------IIKGHCRKNCKPGEQVKKPCKNGDYCCIPSN 50
+C+ SS+C Q SC + CR C+P +V P CC+P++
Sbjct: 165 VCSGASSLCCQQSSCQPACCTTSCCRPSSSVSLLCRPVCRPARRVPVPS-----CCVPTS 219
Query: 51 T 51
+
Sbjct: 220 S 220
>gi|38490571 keratin associated protein 10-7 [Homo sapiens]
Length = 370
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 4 ICTDLSSVCRSQKSC--WIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNTDS 53
+C+ +SS C Q SC + C+ C+P PC++G CI S T S
Sbjct: 164 VCSGISSSCCQQSSCVSCVSSPCCQAVCEP-----SPCQSG---CISSCTPS 207
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 18 CWIIKGHCRKNCKP--GEQVKKPCKNGDYCCIPSNT 51
C GH + C+ KPCKNG C + SNT
Sbjct: 1293 CECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNT 1328
>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
Length = 78
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46
+SC + +G CRK C E+ C+ CC
Sbjct: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
Length = 78
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46
+SC + +G CRK C E+ C+ CC
Sbjct: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 8 LSSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
++ V QK C +KG CR K C + C G CC
Sbjct: 70 MTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 8 LSSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
++ V QK C +KG CR K C + C G CC
Sbjct: 70 MTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 8 LSSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
++ V QK C +KG CR K C + C G CC
Sbjct: 70 MTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
>gi|17978491 CD97 antigen isoform 1 precursor [Homo sapiens]
Length = 835
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 2 PKICTDLSSV------CRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPSNT 51
PK+CTD++ C S C G + C+PG Q NG P+NT
Sbjct: 155 PKVCTDVNECTSGQNPCHSSTHCLNNVGSYQCRCRPGWQPIPGSPNG-----PNNT 205
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 5 CTDLSSVCRSQKSCWIIKGHCRKNCKP---GEQVKKPCKNGDY 44
C C+ Q+ C + +G C C+P G + +PC G Y
Sbjct: 282 CRRRCGQCKGQQPCTVAEGRC-LTCEPGWNGTKCDQPCATGFY 323
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 5 CTDLSSVCRSQKSCWIIKGHCRKNCKP---GEQVKKPCKNGDY 44
C C+ Q+ C + +G C C+P G + +PC G Y
Sbjct: 282 CRRRCGQCKGQQPCTVAEGRC-LTCEPGWNGTKCDQPCATGFY 323
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,670,178
Number of Sequences: 37866
Number of extensions: 95395
Number of successful extensions: 353
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 71
length of query: 53
length of database: 18,247,518
effective HSP length: 27
effective length of query: 26
effective length of database: 17,225,136
effective search space: 447853536
effective search space used: 447853536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.