Guide to the Human Genome
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Name: EFEMP1 Sequence: fasta or formatted (493aa) NCBI GI: 9665262
Description:

EGF-containing fibulin-like extracellular matrix protein 1 precursor

Referenced in:

Extracellular Matrix

Other entries for this name:
alt mRNA [493aa] EGF-containing fibulin-like extracellular matrix protein 1 precursor
alt mRNA [493aa] EGF-containing fibulin-like extracellular matrix protein 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         28           3
 C cysteine            8.1         40           1
 D aspartate           4.9         24           1
 E glutamate           5.9         29           2
 F phenylalanine       3.0         15           1
 G glycine             6.5         32           3
 H histidine           1.4          7           1
 I isoleucine          5.9         29           2
 K lysine              2.2         11           1
 L leucine             5.1         25           1
 M methionine          2.2         11           1
 N asparagine          5.9         29           2
 P proline             5.9         29           2
 Q glutamine           7.3         36           2
 R arginine            5.3         26           2
 S serine              7.3         36           2
 T threonine           6.7         33           2
 V valine              6.1         30           2
 W tryptophan          0.4          2           1
 Y tyrosine            4.3         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EGF-containing fibulin-like extracellular matrix prot... 
EFEMP1                1.000   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                1.000   EGF-containing fibulin-like extracellular matrix pro...
EFEMP2                0.478   EGF-containing fibulin-like extracellular matrix pr...
FBLN5                 0.382   fibulin 5 precursor 
FBLN2                 0.214   fibulin 2 isoform a precursor 
FBLN2                 0.213   fibulin 2 isoform b precursor 
FBLN1                 0.211   fibulin 1 isoform C precursor 
FBLN1                 0.180   fibulin 1 isoform D 
FBLN1                 0.174   fibulin 1 isoform B precursor 
FBLN1                 0.174   fibulin 1 isoform A precursor 
FBN2                  0.154   fibrillin 2 precursor 
FBN1                  0.153   fibrillin 1 precursor 
HMCN1                 0.152   hemicentin 1 
FBN3                  0.151   fibrillin 3 precursor 
LTBP2                 0.139   latent transforming growth factor beta binding protei...
LTBP1                 0.139   latent transforming growth factor beta binding prote...
LTBP1                 0.139   latent transforming growth factor beta binding prote...
LTBP3                 0.138   latent transforming growth factor beta binding prot...
LTBP3                 0.138   latent transforming growth factor beta binding prote...
LTBP4                 0.130   latent transforming growth factor beta binding prot...
LTBP4                 0.130   latent transforming growth factor beta binding prot...
LTBP4                 0.130   latent transforming growth factor beta binding prot...
MATN2                 0.116   matrilin 2 isoform b precursor 
MATN2                 0.116   matrilin 2 isoform a precursor 
SCUBE1                0.109   signal peptide, CUB domain, EGF-like 1 
SCUBE3                0.108   signal peptide, CUB domain, EGF-like 3 
MEGF6                 0.108   EGF-like-domain, multiple 3 
SCUBE2                0.107   CEGP1 protein 
FBLN7                 0.107   fibulin 7 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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