Guide to the Human Genome
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Name: LOC100291872 Sequence: fasta or formatted (90aa) NCBI GI: 239753847
Description:

PREDICTED: hypothetical protein XP_002345798

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          4           1
 C cysteine            4.4          4           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       2.2          2           1
 G glycine             2.2          2           1
 H histidine          12.2         11           1
 I isoleucine         23.3         21           1
 K lysine              0.0          0           0
 L leucine             2.2          2           1
 M methionine          6.7          6           1
 N asparagine          1.1          1           1
 P proline             2.2          2           1
 Q glutamine           0.0          0           0
 R arginine            0.0          0           0
 S serine              3.3          3           2
 T threonine           6.7          6           1
 V valine              4.4          4           1
 W tryptophan          0.0          0           0
 Y tyrosine           24.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345798 
LOC100294441          0.827   PREDICTED: hypothetical protein 
LOC100132983          0.497   PREDICTED: hypothetical protein 
LOC100128473          0.447   PREDICTED: hypothetical protein 
LOC100132107          0.441   PREDICTED: hypothetical protein 
LOC100288317          0.441   PREDICTED: hypothetical protein XP_002342505 
LOC100134332          0.441   PREDICTED: hypothetical protein, partial 
LOC100291272          0.436   PREDICTED: hypothetical protein XP_002348172 
LOC100287989          0.436   PREDICTED: hypothetical protein XP_002343908 
LOC100132107          0.430   PREDICTED: hypothetical protein 
LOC100293402          0.430   PREDICTED: hypothetical protein 
LOC100129642          0.425   PREDICTED: hypothetical protein 
LOC100289649          0.419   PREDICTED: hypothetical protein XP_002342367 
LOC100131488          0.419   PREDICTED: hypothetical protein 
LOC100132316          0.413   PREDICTED: hypothetical protein 
LOC100134411          0.413   PREDICTED: hypothetical protein 
LOC100133807          0.413   PREDICTED: similar to serine/threonine-protein kina...
LOC100133173          0.408   PREDICTED: hypothetical protein 
LOC100132782          0.408   PREDICTED: hypothetical protein 
LOC100134060          0.402   PREDICTED: hypothetical protein 
LOC100131203          0.402   PREDICTED: hypothetical protein 
LOC100132679          0.402   PREDICTED: hypothetical protein 
LOC100291751          0.402   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100289991          0.402   PREDICTED: hypothetical protein XP_002348094 
LOC100134576          0.397   PREDICTED: hypothetical protein 
LOC100132016          0.397   PREDICTED: hypothetical protein 
LOC100288070          0.397   PREDICTED: hypothetical protein XP_002342194 
LOC100131203          0.397   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.397   PREDICTED: similar to serine/threonine-protein kina...
LOC100134730          0.397   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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