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Search of human proteins with 11967991
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11967991 SRY-box 17 [Homo sapiens]
(414 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11967991 SRY-box 17 [Homo sapiens] 879 0.0
gi|8924248 SRY-box 18 [Homo sapiens] 243 2e-64
gi|13899269 SRY-box 7 [Homo sapiens] 230 2e-60
gi|4557853 transcription factor SOX9 [Homo sapiens] 139 6e-33
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens] 136 3e-32
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] 133 3e-31
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 131 1e-30
gi|28195386 sex-determining region Y-box 2 [Homo sapiens] 129 4e-30
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 124 1e-28
gi|4759162 SRY-box 14 [Homo sapiens] 124 2e-28
gi|5902108 SRY-box 21 [Homo sapiens] 120 2e-27
gi|5902106 SRY-box 15 [Homo sapiens] 120 3e-27
gi|4507161 SRY-box 11 [Homo sapiens] 115 9e-26
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 115 9e-26
gi|41406089 SRY-box 13 [Homo sapiens] 114 1e-25
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 114 2e-25
gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo... 112 8e-25
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 112 8e-25
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 112 8e-25
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 109 5e-24
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 109 5e-24
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 109 5e-24
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 109 5e-24
gi|4507225 sex determining region Y [Homo sapiens] 106 4e-23
gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo... 82 9e-16
gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Hom... 82 9e-16
gi|112421108 capicua homolog [Homo sapiens] 66 7e-11
gi|226371625 transcription factor 7-like 2 isoform 5 [Homo sapiens] 64 2e-10
gi|226371764 transcription factor 7-like 2 isoform 1 [Homo sapiens] 62 1e-09
gi|217035121 HMG-BOX transcription factor BBX isoform 1 [Homo sa... 61 2e-09
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 879 bits (2272), Expect = 0.0
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAG 60
MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAG
Sbjct: 1 MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAG 60
Query: 61 RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE 120
RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
Sbjct: 61 RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE 120
Query: 121 AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLG 180
AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLG
Sbjct: 121 AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLG 180
Query: 181 LQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAAP 240
LQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAAP
Sbjct: 181 LQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAAP 240
Query: 241 MPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAM 300
MPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAM
Sbjct: 241 MPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAM 300
Query: 301 GSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQPSPPPEALPCRDGTDPSQPAELLGEVDR 360
GSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQPSPPPEALPCRDGTDPSQPAELLGEVDR
Sbjct: 301 GSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQPSPPPEALPCRDGTDPSQPAELLGEVDR 360
Query: 361 TEFEQYLHFVCKPEMGLPYQGHDSGVNLPDSHGAISSVVSDASSAVYYCNYPDV 414
TEFEQYLHFVCKPEMGLPYQGHDSGVNLPDSHGAISSVVSDASSAVYYCNYPDV
Sbjct: 361 TEFEQYLHFVCKPEMGLPYQGHDSGVNLPDSHGAISSVVSDASSAVYYCNYPDV 414
>gi|8924248 SRY-box 18 [Homo sapiens]
Length = 384
Score = 243 bits (621), Expect = 2e-64
Identities = 178/420 (42%), Positives = 218/420 (51%), Gaps = 78/420 (18%)
Query: 3 SPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAGR- 61
+P G A+D + +A PA +A P A SP E +PAG R
Sbjct: 23 APGHGAAADTRGL--AAGPAALAA--PAAPASPPSPQRSPPRSPEPGRYGLSPAGRGERQ 78
Query: 62 AKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEA 121
A ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNA LSKMLGK+WK L AEKRPFVEEA
Sbjct: 79 AADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEA 138
Query: 122 ERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGG-FLHGLAEPQAAALGPEGGRVAMDGLG 180
ERLRVQH++DHPNYKYRPRR+KQ ++ +R+E G L GLA PQ
Sbjct: 139 ERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQP---------------- 182
Query: 181 LQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDP-DPAFFAA 239
P + FPA +R+ LGA DG LPTP+ SPLDG++P + AFF
Sbjct: 183 ---PPEPFPAA-----SGSARAFRELPPLGA-EFDGLGLPTPERSPLDGLEPGEAAFFPP 233
Query: 240 P-MPGDC---PAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHV 295
P P DC P Y+ ++S P P+ L P + GL
Sbjct: 234 PAAPEDCALRPFRAPYAPTELS--RDPGGCYGAPLAEALRTAPPAAPLAGL--------- 282
Query: 296 YYGAMGSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQPSPPPEALPCRDGTDPSQPAELL 355
YYG +G+PG P PG SPPPEA P A+L
Sbjct: 283 YYGTLGTPG-----------------------PYPGPLSPPPEAPPLESAEPLGPAADLW 319
Query: 356 GEVDRTEFEQYLHFV-CKPEM-GLPY-----QGHDSGVNLPDSHGAISSVVSDASSAVYY 408
+VD TEF+QYL+ +P+ GLPY + ++ P+ IS+ +SDASSAVYY
Sbjct: 320 ADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCPEESSLISA-LSDASSAVYY 378
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 230 bits (587), Expect = 2e-60
Identities = 173/415 (41%), Positives = 217/415 (52%), Gaps = 64/415 (15%)
Query: 27 LGPCPWAESLS-PIGDMKVK-GEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERK 84
LG PW E L P D ++ G++P P G G ESRIRRPMNAFMVWAKDERK
Sbjct: 5 LGAYPWPEGLECPALDAELSDGQSPPAVPRPPGDKG---SESRIRRPMNAFMVWAKDERK 61
Query: 85 RLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ 144
RLA QNPDLHNAELSKMLGKSWKALTL++KRP+V+EAERLR+QHMQD+PNYKYRPRR+KQ
Sbjct: 62 RLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQ 121
Query: 145 VKRL-KRVEGGFLHGLAEPQAAALGPEGGRVAMDGLGLQFPEQGFPAGPPLLPPHMGGHY 203
KRL KRV+ GFL AL PE + LG + + G L P + G Y
Sbjct: 122 AKRLCKRVDPGFLLSSLSRDQNAL-PEKRSGSRGALGEKEDRGEYSPGTAL--PSLRGCY 178
Query: 204 RDCQSLGA-----PPLDGYP--LPT-PDTSPLDGVDPDPAFFAAPMPGDCPAAGTYSYAQ 255
+ + G +D YP LPT P+ SPLD ++P+ FF++P
Sbjct: 179 HEGPAGGGGGGTPSSVDTYPYGLPTPPEMSPLDVLEPEQTFFSSPCQ------------- 225
Query: 256 VSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQ- 314
++ P P P HP PE A PS LH + +GS G G M
Sbjct: 226 -EEHGHPRRIPHLPGHP-YSPEYA----------PSPLHCSH-PLGSLALGQSPGVSMMS 272
Query: 315 ------PQHQHQHQHQHHP------PGPGQPSPPPEALPCRDGTDPSQPAELLGEVDRTE 362
P + +HP GQ SPPPE P D D ELLG++DR E
Sbjct: 273 PVPGCPPSPAYYSPATYHPLHSNLQAHLGQLSPPPEH-PGFDALDQLSQVELLGDMDRNE 331
Query: 363 FEQYLHFVCKPEM---GLPYQGH---DSGVNLPDSHGAISSVVSDASSAVYYCNY 411
F+QYL+ P+ + GH + ++ SV++DA +A YY +Y
Sbjct: 332 FDQYLNTPGHPDSATGAMALSGHVPVSQVTPTGPTETSLISVLADA-TATYYNSY 385
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 139 bits (349), Expect = 6e-33
Identities = 106/309 (34%), Positives = 133/309 (43%), Gaps = 40/309 (12%)
Query: 55 PAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEK 114
P G +K + ++RPMNAFMVWA+ R++LA Q P LHNAELSK LGK W+ L +EK
Sbjct: 92 PVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEK 151
Query: 115 RPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRV 174
RPFVEEAERLRVQH +DHP+YKY+PRRRK VK +G AE + A E +
Sbjct: 152 RPFVEEAERLRVQHKKDHPDYKYQPRRRKSVK----------NGQAEAEEAT---EQTHI 198
Query: 175 AMDGLGLQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDPDP 234
+ + + PH + S G PTP T+P V P
Sbjct: 199 SPNAIFKALQADS---------PHSSSGMSEVHSPGEHSGQSQGPPTPPTTPKTDVQPGK 249
Query: 235 AFF---AAPMP-GDCPAAGTYSYAQV----SDYAGPPEPPAGPMHPRLGPEPAGPSIPGL 286
A P+P G + + SD E + P P +P
Sbjct: 250 ADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPPNGHPGVP-- 307
Query: 287 LAPPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQP---SPPPEALPCR 343
A H GS G H + Q PP P QP P P+A P
Sbjct: 308 -----ATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQAPPQP 362
Query: 344 DGTDPSQPA 352
P QPA
Sbjct: 363 QAAPPQQPA 371
>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
Length = 446
Score = 136 bits (343), Expect = 3e-32
Identities = 98/252 (38%), Positives = 124/252 (49%), Gaps = 30/252 (11%)
Query: 57 GAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRP 116
G G K + ++RPMNAFMVWA+ R++LA Q P LHNAELSK LGK W+ L+ +EKRP
Sbjct: 91 GGGGALKAKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRP 150
Query: 117 FVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAA-LGPE--GGR 173
FVEEAERLRVQH +DHP+YKY+PRRRK K G ++ + A LGP GG
Sbjct: 151 FVEEAERLRVQHKKDHPDYKYQPRRRKSAKA----------GHSDSDSGAELGPHPGGGA 200
Query: 174 V--AMDGLG---LQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPP---LDGYPLPTPDTS 225
V A GLG G GPP P + Q GA P L+G
Sbjct: 201 VYKAEAGLGDGHHHGDHTGQTHGPPTPPT---TPKTELQQAGAKPELKLEGRRPVDSGRQ 257
Query: 226 PLDGVDPDPAFFAAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGP------MHPRLGPEPA 279
+D + D + ++ + G A + + Q GP P G H P A
Sbjct: 258 NIDFSNVDISELSSEVMGTMDAFDVHEFDQYLPLGGPAPPEPGQAYGGAYFHAGASPVWA 317
Query: 280 GPSIPGLLAPPS 291
S P A P+
Sbjct: 318 HKSAPSASASPT 329
>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
Length = 446
Score = 133 bits (334), Expect = 3e-31
Identities = 99/298 (33%), Positives = 139/298 (46%), Gaps = 32/298 (10%)
Query: 21 PAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAGRAKG--ESRIRRPMNAFMVW 78
P AG G P A + G A + G+ GA+G G + R++RPMNAFMVW
Sbjct: 91 PTQAAGTGG-PAAPGGAGKSSANAAGGANSGGGSSGGASGGGGGTDQDRVKRPMNAFMVW 149
Query: 79 AKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 138
++ +R+++A +NP +HN+E+SK LG WK LT AEKRPF++EA+RLR HM+++P+YKYR
Sbjct: 150 SRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYR 209
Query: 139 PRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMD-----GLGLQFPE----QGFP 189
PRR+ + LK+ + GL P AAA A G+G + G+
Sbjct: 210 PRRKTKT-LLKKDKYSLPSGLLPPGAAAAAAAAAAAAAAASSPVGVGQRLDTYTHVNGWA 268
Query: 190 AGPPLLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAAPMPGDCPAAG 249
G L G+ PP P P P P+ D ++ MP P A
Sbjct: 269 NGAYSLVQEQLGY-------AQPPSMSSPPPPPALPPMHRYDMAGLQYSPMMP---PGAQ 318
Query: 250 TY-----SYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAMGS 302
+Y + A S Y G G +PA + A +L G MGS
Sbjct: 319 SYMNVAAAAAAASGYGGMAPSATAAAAAAYGQQPATAAAAAAAAAAMSL----GPMGS 372
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 131 bits (329), Expect = 1e-30
Identities = 68/148 (45%), Positives = 96/148 (64%), Gaps = 18/148 (12%)
Query: 47 EAPANSGAPAGAAGRAKG-------------ESRIRRPMNAFMVWAKDERKRLAQQNPDL 93
+AP N PAGA G G + R++RPMNAFMVW++ +R+++AQ+NP +
Sbjct: 17 QAPTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVKRPMNAFMVWSRGQRRKMAQENPKM 76
Query: 94 HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEG 153
HN+E+SK LG WK ++ AEKRPF++EA+RLR HM++HP+YKYRPRR+ + LK+ +
Sbjct: 77 HNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT-LLKKDKY 135
Query: 154 GFLHGLAEPQAAALGPEGGRVAMDGLGL 181
GL AA G G VAM G+G+
Sbjct: 136 SLAGGLL---AAGAGGGGAAVAM-GVGV 159
>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
Length = 317
Score = 129 bits (325), Expect = 4e-30
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 3/140 (2%)
Query: 36 LSPIGDMKVKGEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHN 95
L P G + G NS A A + R++RPMNAFMVW++ +R+++AQ+NP +HN
Sbjct: 9 LKPPGPQQTSGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHN 68
Query: 96 AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLK---RVE 152
+E+SK LG WK L+ EKRPF++EA+RLR HM++HP+YKYRPRR+ + K +
Sbjct: 69 SEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLP 128
Query: 153 GGFLHGLAEPQAAALGPEGG 172
GG L A+ +G G
Sbjct: 129 GGLLAPGGNSMASGVGVGAG 148
>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
Length = 466
Score = 124 bits (312), Expect = 1e-28
Identities = 56/92 (60%), Positives = 71/92 (77%)
Query: 55 PAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEK 114
P G +K + ++RPMNAFMVWA+ R++LA Q P LHNAELSK LGK W+ L ++K
Sbjct: 91 PVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDK 150
Query: 115 RPFVEEAERLRVQHMQDHPNYKYRPRRRKQVK 146
RPF+EEAERLR+QH +DHP+YKY+PRRRK K
Sbjct: 151 RPFIEEAERLRMQHKKDHPDYKYQPRRRKNGK 182
>gi|4759162 SRY-box 14 [Homo sapiens]
Length = 240
Score = 124 bits (311), Expect = 2e-28
Identities = 66/139 (47%), Positives = 94/139 (67%), Gaps = 6/139 (4%)
Query: 62 AKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEA 121
+K I+RPMNAFMVW++ +R+++AQ+NP +HN+E+SK LG WK L+ AEKRP+++EA
Sbjct: 2 SKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEA 61
Query: 122 ERLRVQHMQDHPNYKYRPRRRKQ--VKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGL 179
+RLR QHM++HP+YKYRPRR+ + +K+ + V G +P AA P G A DGL
Sbjct: 62 KRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFPLPYLGDTDPLKAAGLPVG---ASDGL 118
Query: 180 GLQFPEQGFPAGPPLLPPH 198
L PE+ PP P+
Sbjct: 119 -LSAPEKARAFLPPASAPY 136
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 120 bits (302), Expect = 2e-27
Identities = 60/125 (48%), Positives = 87/125 (69%), Gaps = 6/125 (4%)
Query: 62 AKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEA 121
+K ++RPMNAFMVW++ +R+++AQ+NP +HN+E+SK LG WK LT +EKRPF++EA
Sbjct: 2 SKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEA 61
Query: 122 ERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGF-----LHGLAEPQAAALGPEGGRVAM 176
+RLR HM++HP+YKYRPRR+ + LK+ + F L G+A+ + AL G A
Sbjct: 62 KRLRAMHMKEHPDYKYRPRRKPKT-LLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAG 120
Query: 177 DGLGL 181
G GL
Sbjct: 121 AGGGL 125
>gi|5902106 SRY-box 15 [Homo sapiens]
Length = 233
Score = 120 bits (300), Expect = 3e-27
Identities = 81/207 (39%), Positives = 105/207 (50%), Gaps = 28/207 (13%)
Query: 53 GAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLA 112
GA + AA +++RPMNAFMVW+ +R+++AQQNP +HN+E+SK LG WK L
Sbjct: 34 GAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDED 93
Query: 113 EKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGG 172
EKRPFVEEA+RLR +H++D+P+YKYRPRR K G G A+ GP G
Sbjct: 94 EKRPFVEEAKRLRARHLRDYPDYKYRPRR----KAKSSGAGPSRCGQGRGNLASGGPLWG 149
Query: 173 RVAMDGLGLQFPEQGFPAGPP-----LLPPHMGGHYRDCQS-------LGAPPLDGYPLP 220
G P +GF PP LP G + ++ P L G LP
Sbjct: 150 ----PGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLP 205
Query: 221 T-----PDTSPLDGVDPDPAFFAAPMP 242
T P SP +P APMP
Sbjct: 206 TYTHYLPPGSP---TPYNPPLAGAPMP 229
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 115 bits (287), Expect = 9e-26
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 68 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127
I+RPMNAFMVW+K ER+++ +Q+PD+HNAE+SK LGK WK L +EK PF+ EAERLR++
Sbjct: 49 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLK 108
Query: 128 HMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGG 172
HM D+P+YKYRPR++ ++ + P+ +A G GG
Sbjct: 109 HMADYPDYKYRPRKKPKMDPSAKPSAS-----QSPEKSAAGGGGG 148
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 115 bits (287), Expect = 9e-26
Identities = 64/144 (44%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 43 KVKGEAPANSGAPAGAAGRAKG-----ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAE 97
K G P PA R G I+RPMNAFMVW++ ER+++ Q PD+HNAE
Sbjct: 10 KRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAE 69
Query: 98 LSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ---VKRLKRVEGG 154
+SK LG+ W+ L +EK PFV EAERLR++HM D+P+YKYRPR++ + K R GG
Sbjct: 70 ISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGG 129
Query: 155 FLHGLAEPQAAALGPEGGRVAMDG 178
G L GGR A G
Sbjct: 130 SGGGSRLKPGPQLPGRGGRRAAGG 153
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 114 bits (286), Expect = 1e-25
Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 8/142 (5%)
Query: 62 AKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEA 121
++ S I+RPMNAFMVWAKDER+++ Q PD+HN+ +SK+LG WK++T EK+P+ EE
Sbjct: 418 SRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQ 477
Query: 122 ERLRVQHMQDHPNYKYRPR-RRKQVKRLKRVEGGFLHGLAEP------QAAALGPEGGRV 174
RL QH++ +P+YKY+PR +R + KR+ G L Q+ + P+ G+V
Sbjct: 478 ARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPPQAGQV 537
Query: 175 AMDGLGLQFPE-QGFPAGPPLL 195
M + +P G P PL+
Sbjct: 538 QMSSSDVLYPRAAGMPLAQPLV 559
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 114 bits (284), Expect = 2e-25
Identities = 60/136 (44%), Positives = 87/136 (63%), Gaps = 16/136 (11%)
Query: 53 GAPAGAAGRAKGES-------RIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKS 105
G+ A G+A S I+RPMNAFMVW++ ER+++ +Q+PD+HNAE+SK LGK
Sbjct: 37 GSTASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKR 96
Query: 106 WKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAA 165
WK L ++K PF+ EAERLR++HM D+P+YKYRPR K+V+ G + + A+
Sbjct: 97 WKLLKDSDKIPFIREAERLRLKHMADYPDYKYRPR--------KKVKSGNANSSSSAAAS 148
Query: 166 AL-GPEGGRVAMDGLG 180
+ G +G +V G G
Sbjct: 149 SKPGEKGDKVGGSGGG 164
>gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo
sapiens]
Length = 377
Score = 112 bits (279), Expect = 8e-25
Identities = 49/108 (45%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 41 DMKVKGEAPANSGAPAG-----AAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHN 95
D + G++ ++G + GR E I+RPMNAFMVWAKDER+++ Q PD+HN
Sbjct: 138 DFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN 197
Query: 96 AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 143
+ +SK+LG WKA+T EK+P+ EE RL QH++ +P+YKY+PR ++
Sbjct: 198 SNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 245
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 112 bits (279), Expect = 8e-25
Identities = 49/108 (45%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 41 DMKVKGEAPANSGAPAG-----AAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHN 95
D + G++ ++G + GR E I+RPMNAFMVWAKDER+++ Q PD+HN
Sbjct: 511 DFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN 570
Query: 96 AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 143
+ +SK+LG WKA+T EK+P+ EE RL QH++ +P+YKY+PR ++
Sbjct: 571 SNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 618
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 112 bits (279), Expect = 8e-25
Identities = 49/108 (45%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 41 DMKVKGEAPANSGAPAG-----AAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHN 95
D + G++ ++G + GR E I+RPMNAFMVWAKDER+++ Q PD+HN
Sbjct: 524 DFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN 583
Query: 96 AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 143
+ +SK+LG WKA+T EK+P+ EE RL QH++ +P+YKY+PR ++
Sbjct: 584 SNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 631
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 109 bits (272), Expect = 5e-24
Identities = 48/98 (48%), Positives = 68/98 (69%)
Query: 46 GEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKS 105
G A + A GRA E I+RPMNAFMVWAKDER+++ Q PD+HN+ +SK+LG
Sbjct: 612 GATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSR 671
Query: 106 WKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 143
WK+++ EK+P+ EE RL H++ +PNYKY+PR ++
Sbjct: 672 WKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKR 709
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 109 bits (272), Expect = 5e-24
Identities = 48/98 (48%), Positives = 68/98 (69%)
Query: 46 GEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKS 105
G A + A GRA E I+RPMNAFMVWAKDER+++ Q PD+HN+ +SK+LG
Sbjct: 572 GATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSR 631
Query: 106 WKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 143
WK+++ EK+P+ EE RL H++ +PNYKY+PR ++
Sbjct: 632 WKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKR 669
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 109 bits (272), Expect = 5e-24
Identities = 48/98 (48%), Positives = 68/98 (69%)
Query: 46 GEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKS 105
G A + A GRA E I+RPMNAFMVWAKDER+++ Q PD+HN+ +SK+LG
Sbjct: 575 GATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSR 634
Query: 106 WKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 143
WK+++ EK+P+ EE RL H++ +PNYKY+PR ++
Sbjct: 635 WKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKR 672
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 109 bits (272), Expect = 5e-24
Identities = 48/98 (48%), Positives = 68/98 (69%)
Query: 46 GEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKS 105
G A + A GRA E I+RPMNAFMVWAKDER+++ Q PD+HN+ +SK+LG
Sbjct: 579 GATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSR 638
Query: 106 WKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 143
WK+++ EK+P+ EE RL H++ +PNYKY+PR ++
Sbjct: 639 WKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKR 676
>gi|4507225 sex determining region Y [Homo sapiens]
Length = 204
Score = 106 bits (264), Expect = 4e-23
Identities = 43/89 (48%), Positives = 67/89 (75%)
Query: 57 GAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRP 116
G + + R++RPMNAF+VW++D+R+++A +NP + N+E+SK LG WK LT AEK P
Sbjct: 49 GENSKGNVQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWP 108
Query: 117 FVEEAERLRVQHMQDHPNYKYRPRRRKQV 145
F +EA++L+ H + +PNYKYRPRR+ ++
Sbjct: 109 FFQEAQKLQAMHREKYPNYKYRPRRKAKM 137
>gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo
sapiens]
Length = 501
Score = 82.0 bits (201), Expect = 9e-16
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 49 PANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKA 108
P+++G P + + ++RPMNAFMVWA+ R LA+ NP +NAE+S LG W
Sbjct: 319 PSDAGIPDTPFSKDRN-GHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNK 377
Query: 109 LTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ 144
L+ +K+P+ +EA++++ +H ++ P + Y+PR K+
Sbjct: 378 LSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKR 413
>gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Homo
sapiens]
Length = 753
Score = 82.0 bits (201), Expect = 9e-16
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 49 PANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKA 108
P+++G P + + ++RPMNAFMVWA+ R LA+ NP +NAE+S LG W
Sbjct: 319 PSDAGIPDTPFSKDRN-GHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNK 377
Query: 109 LTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ 144
L+ +K+P+ +EA++++ +H ++ P + Y+PR K+
Sbjct: 378 LSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKR 413
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 65.9 bits (159), Expect = 7e-11
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 51 NSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 110
+S G + + + IRRPMNAFM+++K R + Q++P+ N +SK+LG+ W AL
Sbjct: 183 SSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALG 242
Query: 111 LAEKRPFVEEAERLRVQHMQDHPNYKY-RPRRRKQVKRLKRVEGGFLHGLAEPQAAALGP 169
EK+ + + A +++ H + HP++K+ R+K K G G E + ++
Sbjct: 243 PKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSE 302
Query: 170 EGGRVA 175
G A
Sbjct: 303 TGTAAA 308
Score = 32.3 bits (72), Expect = 0.81
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 212 PPLDGYPLPTPDTSPLDGVDPDPAFFAAPMPGDCPAAGTYSYAQVSD----YAGPPEPP- 266
PP PLP P P AAP P PA G + SD A PP PP
Sbjct: 1528 PPGAEAPLPVP---------PPTGTAAAPAPTPSPAGGPDPTSPSSDSGTAQAAPPLPPP 1578
Query: 267 --AGPMH------PRLGPEPAGPS 282
+GP P+ P P GPS
Sbjct: 1579 PESGPGQPGWEGAPQPSPPPPGPS 1602
Score = 29.6 bits (65), Expect = 5.2
Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 18/133 (13%)
Query: 211 APPLDGYPLPTPDTSPLDGV------DPDPAFFAAPMPGDCPAAGTYSYAQVSDYAGPPE 264
APP Y + T T P + P A A P AG+ +Y+ V+ A P
Sbjct: 1114 APPSLVYTVATSTTPPAATILPKGPPAPATATPAPTSPFPSATAGSMTYSLVAPKAQRPS 1173
Query: 265 PPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQ 324
P A P+ +I + P + GA G PG + + P +
Sbjct: 1174 PKA--------PQKVKAAIASI--PVGSFEA--GASGRPGPAPRQPLEPGPVREPTAPES 1221
Query: 325 HHPPGPGQPSPPP 337
P P+PPP
Sbjct: 1222 ELEGQPTPPAPPP 1234
>gi|226371625 transcription factor 7-like 2 isoform 5 [Homo sapiens]
Length = 579
Score = 64.3 bits (155), Expect = 2e-10
Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 15/250 (6%)
Query: 63 KGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAE 122
K + I++P+NAFM++ K+ R ++ + +A ++++LG+ W AL+ E+ + E A
Sbjct: 322 KKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELAR 381
Query: 123 RLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAA----ALGPEGGRVAMDG 178
+ R HMQ +P + R K+ KR + + G + L+ P+ L +
Sbjct: 382 KERQLHMQLYPGWSARDNYGKKKKRKRDKQPGETNDLSAPKKCRARFGLDQQNNWCGPCR 441
Query: 179 LGLQFPEQGFPAGPPLLPPHMGGHYRDC-----QSLGAPPLDGYPLPTPDTSPLD-GVDP 232
+ G L PP G D LG+PP D T T PL + P
Sbjct: 442 RKKKCVRYIQGEGSCLSPPSSDGSLLDSPPPSPNLLGSPPRDA-KSQTEQTQPLSLSLKP 500
Query: 233 DPAFFAAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSA 292
DP + MP PA A+ + A P P +PA PS S+
Sbjct: 501 DPLAHLSMMPPP-PA---LLLAEATHKASALCPNGALDLPPAALQPAAPSSSIAQPSTSS 556
Query: 293 LHVYYGAMGS 302
LH + G+
Sbjct: 557 LHSHSSLAGT 566
>gi|226371764 transcription factor 7-like 2 isoform 1 [Homo sapiens]
Length = 602
Score = 61.6 bits (148), Expect = 1e-09
Identities = 69/260 (26%), Positives = 106/260 (40%), Gaps = 35/260 (13%)
Query: 63 KGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAE 122
K + I++P+NAFM++ K+ R ++ + +A ++++LG+ W AL+ E+ + E A
Sbjct: 345 KKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELAR 404
Query: 123 RLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLGLQ 182
+ R HMQ +P + R K+ KR + + G + P+ A+ GL Q
Sbjct: 405 KERQLHMQLYPGWSARDNYGKKKKRKRDKQPGETNDANTPKKCR--------ALFGLDRQ 456
Query: 183 F--------------PEQGFPAGPPLLPPHMGGHYRDC-----QSLGAPPLDGYPLPTPD 223
QG G L PP G D LG+PP D T
Sbjct: 457 TLWCKPCRRKKKCVRYIQG--EGSCLSPPSSDGSLLDSPPPSPNLLGSPPRDA-KSQTEQ 513
Query: 224 TSPLD-GVDPDPAFFAAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPS 282
T PL + PDP + MP PA A+ + A P P +PA PS
Sbjct: 514 TQPLSLSLKPDPLAHLSMMPPP-PA---LLLAEATHKASALCPNGALDLPPAALQPAAPS 569
Query: 283 IPGLLAPPSALHVYYGAMGS 302
S+LH + G+
Sbjct: 570 SSIAQPSTSSLHSHSSLAGT 589
>gi|217035121 HMG-BOX transcription factor BBX isoform 1 [Homo
sapiens]
Length = 941
Score = 60.8 bits (146), Expect = 2e-09
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 65 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124
E R RRPMNAF+++ K R + Q++P L N +K+L W L EK+ + + A+
Sbjct: 77 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 136
Query: 125 RVQHMQDHPNYKYRPRRRKQVK 146
+ M+ +P YK+ P K VK
Sbjct: 137 KDAFMKANPGYKWCPTTNKPVK 158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,223,005
Number of Sequences: 37866
Number of extensions: 1616990
Number of successful extensions: 13380
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 871
Number of HSP's that attempted gapping in prelim test: 8065
Number of HSP's gapped (non-prelim): 4255
length of query: 414
length of database: 18,247,518
effective HSP length: 105
effective length of query: 309
effective length of database: 14,271,588
effective search space: 4409920692
effective search space used: 4409920692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.