Search of human proteins with 239756053

Search of human proteins with 239756053

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756053 PREDICTED: hypothetical protein XP_002344786 [Homo
sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756053 PREDICTED: hypothetical protein XP_002344786 [Homo ...   177   2e-45
gi|239750556 PREDICTED: hypothetical protein [Homo sapiens]           177   2e-45
gi|239744853 PREDICTED: hypothetical protein XP_002344121 [Homo ...   177   2e-45
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         36   0.007
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    34   0.028
gi|7657345 mitochondrial carrier homolog 1 [Homo sapiens]              33   0.037
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                        32   0.11 
gi|31324577 molecule interacting with Rab13 [Homo sapiens]             32   0.11 
gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo sapi...    31   0.18 
gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo sapi...    31   0.18 
gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo sap...    31   0.18 
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]            30   0.41 
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ...    30   0.41 
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ...    30   0.41 
gi|16975496 cortactin binding protein 2 [Homo sapiens]                 30   0.41 
gi|55741655 anoctamin 8 [Homo sapiens]                                 30   0.53 
gi|150010577 tyrosine kinase, non-receptor, 1 [Homo sapiens]           30   0.53 
gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens]     29   0.70 
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap...    29   0.70 
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ...    29   0.91 
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ...    29   0.91 
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ...    29   0.91 
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...    28   1.2  
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...    28   1.2  
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...    28   1.2  
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...    28   1.2  
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...    28   1.2  
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...    28   1.2  
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ...    28   1.2  
gi|171543895 ataxin 2 [Homo sapiens]                                   28   1.2  

>gi|239756053 PREDICTED: hypothetical protein XP_002344786 [Homo
          sapiens]
          Length = 86

 Score =  177 bits (449), Expect = 2e-45
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP 60
          MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP
Sbjct: 1  MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP 60

Query: 61 SRRRLPAPRRQLGEAGWAPETCCSGA 86
          SRRRLPAPRRQLGEAGWAPETCCSGA
Sbjct: 61 SRRRLPAPRRQLGEAGWAPETCCSGA 86


>gi|239750556 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score =  177 bits (449), Expect = 2e-45
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP 60
          MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP
Sbjct: 1  MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP 60

Query: 61 SRRRLPAPRRQLGEAGWAPETCCSGA 86
          SRRRLPAPRRQLGEAGWAPETCCSGA
Sbjct: 61 SRRRLPAPRRQLGEAGWAPETCCSGA 86


>gi|239744853 PREDICTED: hypothetical protein XP_002344121 [Homo
          sapiens]
          Length = 86

 Score =  177 bits (449), Expect = 2e-45
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP 60
          MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP
Sbjct: 1  MELEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAP 60

Query: 61 SRRRLPAPRRQLGEAGWAPETCCSGA 86
          SRRRLPAPRRQLGEAGWAPETCCSGA
Sbjct: 61 SRRRLPAPRRQLGEAGWAPETCCSGA 86


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 20  EAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCT------DASAPSRRRLPAPRR 70
           E +P+G    +  PP  R   S  P PP  R +  T        S P RRR P+PRR
Sbjct: 539 ETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRR 595


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 8   ALALGVLGRGAAEAAPQGLTLAALRPPAAREGH-SQQPQPPHARLQVCTDASAPSRRRLP 66
           A A G LG      +P G   A   P A  EG     P+PP A  +       P R   P
Sbjct: 52  AAAAGALGNHVVSGSPAGA--AGAGPAAPAEGAPGAAPEPPPAG-RARPGGGGPQRPGPP 108

Query: 67  APRRQLGEAGWAP 79
           +PRR L  AG AP
Sbjct: 109 SPRRPLVPAGPAP 121



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 17  GAAEAAP-QGLTLAALRPPAARE-----GHSQQPQPPHARLQVCTDASAPSRRRL-PAPR 69
           GA  AAP +G   AA  PP A       G  Q+P PP  R  +     AP   +L P P 
Sbjct: 72  GAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPE 131

Query: 70  RQLGEAGWAPETCCSGA 86
              G     P      A
Sbjct: 132 GSAGSCAPVPAAAAVAA 148


>gi|7657345 mitochondrial carrier homolog 1 [Homo sapiens]
          Length = 372

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 15 GRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPRRQLGE 74
          G GA   A  G+   A  PP A   H + P+P          A+ PS RR+      LG 
Sbjct: 25 GAGARGGAAAGVEARARDPPPAHRAHPRHPRP----------AAQPSARRMDGGSGGLGS 74

Query: 75 AGWAPET 81
             AP T
Sbjct: 75 GDNAPTT 81


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 14/82 (17%)

Query: 17  GAAEAAPQGLTLAALRPPAAREG--------HSQQPQPPHAR----LQVCTDASAP--SR 62
           G A ++P  +T+    P    +         HSQQP PP A     LQ       P   +
Sbjct: 59  GTAPSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQ 118

Query: 63  RRLPAPRRQLGEAGWAPETCCS 84
           +  P P +QLG A  AP T  S
Sbjct: 119 QPPPPPPQQLGSAASAPRTSTS 140


>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
          Length = 863

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPR 69
           A  V G G + +AP G    A  P A+ E   Q P  P    ++   AS P+ R  PAPR
Sbjct: 249 AKDVPGGGPSSSAPAGAE--ADGPKASPEARPQIPTKPRVPGKLQELASPPAGRPTPAPR 306

Query: 70  RQLGEAGWAPET 81
           +       AP T
Sbjct: 307 KASESTTPAPPT 318


>gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo
           sapiens]
          Length = 284

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPR 69
           A G   RGA+     G   A   PP         P  PHAR +      +P R+ LP P 
Sbjct: 100 ATGTTVRGASVKRTGGPAPAQPSPPGPLP---PTPHGPHARAETGASPGSPVRQPLPGPA 156

Query: 70  RQLGEAGW 77
            Q  EA W
Sbjct: 157 PQ-REAAW 163


>gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo
           sapiens]
          Length = 284

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPR 69
           A G   RGA+     G   A   PP         P  PHAR +      +P R+ LP P 
Sbjct: 100 ATGTTVRGASVKRTGGPAPAQPSPPGPLP---PTPHGPHARAETGASPGSPVRQPLPGPA 156

Query: 70  RQLGEAGW 77
            Q  EA W
Sbjct: 157 PQ-REAAW 163


>gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo
           sapiens]
          Length = 284

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPR 69
           A G   RGA+     G   A   PP         P  PHAR +      +P R+ LP P 
Sbjct: 100 ATGTTVRGASVKRTGGPAPAQPSPPGPLP---PTPHGPHARAETGASPGSPVRQPLPGPA 156

Query: 70  RQLGEAGW 77
            Q  EA W
Sbjct: 157 PQ-REAAW 163


>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 281

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 13  VLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQ-PPHARLQVCTDASAPSRRRLPAPRRQ 71
           VLGR A EA      L  LRP AA++   Q P+ P HAR      A +P    LP  R+ 
Sbjct: 192 VLGREAPEAV-----LLVLRPGAAQQQPQQPPRHPSHAR----RAAGSPELSWLPRGRKG 242

Query: 72  LG 73
            G
Sbjct: 243 TG 244


>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
           sapiens]
          Length = 346

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 13  VLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQ-PPHARLQVCTDASAPSRRRLPAPRRQ 71
           VLGR A EA      L  LRP AA++   Q P+ P HAR      A +P    LP  R+ 
Sbjct: 257 VLGREAPEAV-----LLVLRPGAAQQQPQQPPRHPSHAR----RAAGSPELSWLPRGRKG 307

Query: 72  LG 73
            G
Sbjct: 308 TG 309


>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
           sapiens]
          Length = 346

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 13  VLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQ-PPHARLQVCTDASAPSRRRLPAPRRQ 71
           VLGR A EA      L  LRP AA++   Q P+ P HAR      A +P    LP  R+ 
Sbjct: 257 VLGREAPEAV-----LLVLRPGAAQQQPQQPPRHPSHAR----RAAGSPELSWLPRGRKG 307

Query: 72  LG 73
            G
Sbjct: 308 TG 309


>gi|16975496 cortactin binding protein 2 [Homo sapiens]
          Length = 1663

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 34  PAAREGHSQQPQPPHARLQVCTDASAPS 61
           P  + G SQ P PPH +L+V  D+S  S
Sbjct: 546 PPKKPGLSQTPSPPHPQLKVIIDSSRAS 573


>gi|55741655 anoctamin 8 [Homo sapiens]
          Length = 1232

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 12   GVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQP----------PHARLQVCTD---AS 58
            G  G G   AAP+    AA  PP A  G    PQP          P   L   +D     
Sbjct: 1153 GPWGCGGEGAAPRQALAAAECPPCAMAGPPPAPQPLPGDASFYSLPPPPLPPTSDPLETP 1212

Query: 59   APSRRRLPAPRRQLGEAGW 77
            APS    P+P+     +GW
Sbjct: 1213 APSPSPSPSPQAVCWPSGW 1231


>gi|150010577 tyrosine kinase, non-receptor, 1 [Homo sapiens]
          Length = 661

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 15/53 (28%)

Query: 19  AEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPRRQ 71
           A A PQG      RPP +    S  PQP           S PSR RLP P+R+
Sbjct: 521 ARAVPQGPPGLPPRPPLS----SSSPQP-----------SQPSRERLPWPKRK 558


>gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens]
          Length = 951

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 20  EAAPQG--LTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPRRQLGEA 75
           EA  +G  + L+ L PP  +      P PP    Q  T A+APS   +P P R L EA
Sbjct: 298 EALSRGEPVDLSCLPPPPDQ----LPPDPPSPPSQPPTPATAPSTTEVPPPPRTLLEA 351


>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
          sapiens]
          Length = 666

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 20/66 (30%), Positives = 26/66 (39%)

Query: 10 ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPR 69
          A    G   AEA   G   A L    +R    QQ + P       +   A  RRR P  R
Sbjct: 14 AAAAAGPEGAEAGAHGRARALLERLQSRARERQQQREPAQTEAAASTEPATRRRRRPRRR 73

Query: 70 RQLGEA 75
          R++ +A
Sbjct: 74 RRVNDA 79


>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
           sapiens]
          Length = 459

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 15  GRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHAR-------LQVCTDASAPSRRRLPA 67
           GR  + A P G T +A R P AR    +  QP HA         +  + A+ P   R PA
Sbjct: 165 GRSPSPADP-GSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPA 223

Query: 68  PRR 70
            RR
Sbjct: 224 SRR 226


>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
           sapiens]
          Length = 459

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 15  GRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHAR-------LQVCTDASAPSRRRLPA 67
           GR  + A P G T +A R P AR    +  QP HA         +  + A+ P   R PA
Sbjct: 165 GRSPSPADP-GSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPA 223

Query: 68  PRR 70
            RR
Sbjct: 224 SRR 226


>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
            sapiens]
          Length = 1336

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 5/34 (14%)

Query: 14   LGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPP 47
            LG G A AAP+G     L PPAA     Q PQ P
Sbjct: 975  LGLGEARAAPRGAAGRPLSPPAA-----QPPQKP 1003


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHAR 50
           A G  GRGA  AAP     AA  PP  R G+SQ+  P  AR
Sbjct: 495 ARGRGGRGARGAAPSRGRGAA--PPRGRAGYSQRGGPGSAR 533


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHAR 50
           A G  GRGA  AAP     AA  PP  R G+SQ+  P  AR
Sbjct: 460 ARGRGGRGARGAAPSRGRGAA--PPRGRAGYSQRGGPGSAR 498


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHAR 50
           A G  GRGA  AAP     AA  PP  R G+SQ+  P  AR
Sbjct: 397 ARGRGGRGARGAAPSRGRGAA--PPRGRAGYSQRGGPGSAR 435


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHAR 50
           A G  GRGA  AAP     AA  PP  R G+SQ+  P  AR
Sbjct: 460 ARGRGGRGARGAAPSRGRGAA--PPRGRAGYSQRGGPGSAR 498


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHAR 50
           A G  GRGA  AAP     AA  PP  R G+SQ+  P  AR
Sbjct: 495 ARGRGGRGARGAAPSRGRGAA--PPRGRAGYSQRGGPGSAR 533


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 10  ALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHAR 50
           A G  GRGA  AAP     AA  PP  R G+SQ+  P  AR
Sbjct: 495 ARGRGGRGARGAAPSRGRGAA--PPRGRAGYSQRGGPGSAR 533


>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence [Homo sapiens]
          Length = 906

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 3   LEVADALALGVLGRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSR 62
           L  A   A G L +      P  L      PP  R         P  R   CT    PSR
Sbjct: 516 LGTASKAASGSLHKDKPLPVPPTLRDLPPPPPPDRPYSVGAESRPQRRPLPCTPGDCPSR 575

Query: 63  RRL-PAPRRQLGEAGWAP 79
            +L P P  +LG++ W P
Sbjct: 576 DKLPPVPSSRLGDS-WLP 592


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 15 GRGAAEAAPQGLTLAALRPPAAREGHSQQPQPPHARLQVCTDASAPSRRRLPAPRRQLGE 74
          GRG   AAP     AA  PP      S+Q  PP A     ++ +     R P  RR LG 
Sbjct: 39 GRGGGGAAPGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGNGGGAFR-PGSRRLLGL 97

Query: 75 AG 76
           G
Sbjct: 98 GG 99


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.130    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,131,177
Number of Sequences: 37866
Number of extensions: 210024
Number of successful extensions: 1348
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 182
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.