Guide to the Human Genome
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Name: CBL Sequence: fasta or formatted (906aa) NCBI GI: 52426745
Description:

Cas-Br-M (murine) ecotropic retroviral transforming sequence

Referenced in:

Retroviral Oncogene Homologs
Protein Tyrosine Phosphatases
Ring Finger Proteins
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         58           3
 C cysteine            2.5         23           1
 D aspartate           5.5         50           5
 E glutamate           6.1         55           2
 F phenylalanine       3.6         33           1
 G glycine             6.7         61           3
 H histidine           2.4         22           7
 I isoleucine          4.1         37           1
 K lysine              5.2         47           2
 L leucine             8.8         80           2
 M methionine          2.5         23           2
 N asparagine          3.3         30           2
 P proline            10.5         95           6
 Q glutamine           4.2         38           2
 R arginine            5.2         47           2
 S serine             10.3         93           3
 T threonine           5.1         46           2
 V valine              4.0         36           2
 W tryptophan          1.1         10           1
 Y tyrosine            2.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Cas-Br-M (murine) ecotropic retroviral transforming ... 
CBLB                  0.438   Cas-Br-M (murine) ecotropic retroviral transforming ...
CBLC                  0.215   Cas-Br-M (murine) ecotropic retroviral transforming...
CBLC                  0.164   Cas-Br-M (murine) ecotropic retroviral transforming...
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.017   myeloid/lymphoid or mixed-lineage leukemia 2 
RAPH1                 0.017   Ras association and pleckstrin homology domains 1 is...
WIPF3                 0.017   WAS/WASL interacting protein family, member 3 [Homo...
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
DIAPH1                0.016   diaphanous 1 isoform 2 
DIAPH1                0.016   diaphanous 1 isoform 1 
PDCD7                 0.016   programmed cell death 7 
WIPF1                 0.015   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.015   WAS/WASL interacting protein family, member 1 
SETD1B                0.015   SET domain containing 1B 
SYVN1                 0.015   synoviolin 1 isoform a 
B4GALNT4              0.015   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
RNF5                  0.014   ring finger protein 5 
SYVN1                 0.014   synoviolin 1 isoform b 
WASL                  0.014   Wiskott-Aldrich syndrome gene-like protein 
LOC100132247          0.014   hypothetical protein LOC100132247 
PRR12                 0.014   proline rich 12 
COL27A1               0.013   collagen, type XXVII, alpha 1 
POU3F3                0.013   POU class 3 homeobox 3 
TTN                   0.013   titin isoform N2-A 
MUC7                  0.013   mucin 7, secreted precursor 
MUC7                  0.013   mucin 7, secreted precursor 
MUC7                  0.013   mucin 7, secreted precursor 
RERE                  0.013   atrophin-1 like protein isoform b 
RERE                  0.013   atrophin-1 like protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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