Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SYNCRIP Sequence: fasta or formatted (464aa) NCBI GI: 228008396
Description:

synaptotagmin binding, cytoplasmic RNA interacting protein isoform 2

Referenced in:

hnRNP
RNA Editing and Other RNA Modifications

Other entries for this name:
alt prot [623aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 1
alt prot [561aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 5
alt prot [588aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 4
alt prot [527aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 3
alt prot [562aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         34           2
 C cysteine            0.6          3           1
 D aspartate           6.2         29           2
 E glutamate           7.3         34           2
 F phenylalanine       3.4         16           1
 G glycine            12.7         59           2
 H histidine           1.5          7           1
 I isoleucine          3.2         15           1
 K lysine              8.0         37           3
 L leucine             5.4         25           2
 M methionine          1.9          9           2
 N asparagine          2.8         13           2
 P proline             6.2         29           3
 Q glutamine           4.5         21           3
 R arginine            8.2         38           3
 S serine              3.2         15           2
 T threonine           3.9         18           2
 V valine              6.0         28           1
 W tryptophan          0.6          3           1
 Y tyrosine            6.7         31           4
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin binding, cytoplasmic RNA interacting ... 
SYNCRIP               1.000   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.993   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.972   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.903   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.875   synaptotagmin binding, cytoplasmic RNA interacting ...
HNRNPR                0.809   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.809   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
HNRNPR                0.803   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.803   heterogeneous nuclear ribonucleoprotein R isoform 1...
RBM47                 0.353   RNA binding motif protein 47 isoform a 
RBM47                 0.335   RNA binding motif protein 47 isoform b 
A1CF                  0.329   apobec-1 complementation factor isoform 2 
A1CF                  0.329   apobec-1 complementation factor isoform 1 
RBM46                 0.328   RNA binding motif protein 46 
A1CF                  0.312   apobec-1 complementation factor isoform 3 
DND1                  0.116   dead end homolog 1 
PABPC4L               0.083   poly(A) binding protein, cytoplasmic 4-like 
PABPC4                0.073   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.073   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.073   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC3                0.068   poly(A) binding protein, cytoplasmic 3 
PABPC1                0.065   poly(A) binding protein, cytoplasmic 1 
PABPC1L               0.065   poly(A)-binding protein, cytoplasmic 1-like 
BRUNOL5               0.061   bruno-like 5, RNA binding protein isoform 1 
HNRNPA1L2             0.056   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.056   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1               0.055   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
BRUNOL4               0.055   bruno-like 4, RNA binding protein isoform 4 
TNRC4                 0.055   trinucleotide repeat containing 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press