Guide to the Human Genome
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Name: FLJ39639 Sequence: fasta or formatted (284aa) NCBI GI: 113426298
Description:

PREDICTED: hypothetical protein FLJ39639

Not currently referenced in the text

Other entries for this name:
alt mRNA {284aa} PREDICTED: hypothetical protein LOC283876
alt mRNA {284aa} PREDICTED: hypothetical protein FLJ39639
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         27           2
 C cysteine            1.4          4           1
 D aspartate           3.5         10           1
 E glutamate           4.6         13           2
 F phenylalanine       2.8          8           1
 G glycine             7.7         22           2
 H histidine           2.1          6           1
 I isoleucine          2.1          6           1
 K lysine              4.6         13           2
 L leucine             8.8         25           2
 M methionine          1.4          4           1
 N asparagine          2.5          7           1
 P proline            14.8         42           2
 Q glutamine           2.8          8           1
 R arginine           12.0         34           3
 S serine              6.0         17           1
 T threonine           4.9         14           2
 V valine              5.3         15           2
 W tryptophan          3.2          9           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              1.000   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              1.000   PREDICTED: hypothetical protein LOC283876 
BAT2                  0.045   HLA-B associated transcript-2 
ARHGEF11              0.036   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.036   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
PDCD7                 0.035   programmed cell death 7 
SYDE1                 0.035   synapse defective 1, Rho GTPase, homolog 1 
SYN1                  0.033   synapsin I isoform Ia 
SYN1                  0.033   synapsin I isoform Ib 
ROBO3                 0.033   roundabout, axon guidance receptor, homolog 3 
EP300                 0.031   E1A binding protein p300 
NACA                  0.031   nascent polypeptide-associated complex alpha subuni...
MGC50722              0.031   hypothetical protein LOC399693 
FHDC1                 0.030   FH2 domain containing 1 
LOC100131102          0.030   PREDICTED: hypothetical protein 
LOC100131102          0.030   PREDICTED: hypothetical protein 
LOC283999             0.030   hypothetical protein LOC283999 
COL11A2               0.030   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.030   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.030   collagen, type XI, alpha 2 isoform 1 preproprotein ...
MED25                 0.030   mediator complex subunit 25 
FNDC1                 0.028   fibronectin type III domain containing 1 
WASF3                 0.028   WAS protein family, member 3 
WAS                   0.026   Wiskott-Aldrich syndrome protein 
TBKBP1                0.026   TBK1 binding protein 1 
USP51                 0.026   ubiquitin specific protease 51 
COL2A1                0.026   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.026   collagen, type II, alpha 1 isoform 2 precursor [Hom...
PRG4                  0.026   proteoglycan 4 isoform D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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