SYNCRIP 15666

Name: SYNCRIP	Sequence: fasta or formatted (562aa)		NCBI GI: 228008400
Description: synaptotagmin binding, cytoplasmic RNA interacting protein isoform 6		Referenced in: hnRNP RNA Editing and Other RNA Modifications
Other entries for this name: alt prot [623aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 1 alt prot [561aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 5 alt prot [588aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 4 alt prot [464aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 2 alt prot [527aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 45 2 C cysteine 0.7 4 1 D aspartate 6.6 37 2 E glutamate 7.8 44 2 F phenylalanine 3.6 20 1 G glycine 11.6 65 2 H histidine 2.0 11 1 I isoleucine 3.2 18 1 K lysine 7.5 42 3 L leucine 6.4 36 2 M methionine 2.0 11 2 N asparagine 3.2 18 2 P proline 5.5 31 3 Q glutamine 4.6 26 3 R arginine 6.9 39 3 S serine 3.7 21 2 T threonine 4.1 23 2 V valine 6.4 36 1 W tryptophan 0.5 3 1 Y tyrosine 5.7 32 4			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.994 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.977 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.919 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.896 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.831 synaptotagmin binding, cytoplasmic RNA interacting ... HNRNPR 0.791 heterogeneous nuclear ribonucleoprotein R isoform 2 [... HNRNPR 0.787 heterogeneous nuclear ribonucleoprotein R isoform 1... HNRNPR 0.673 heterogeneous nuclear ribonucleoprotein R isoform 4... HNRNPR 0.667 heterogeneous nuclear ribonucleoprotein R isoform 3... RBM47 0.293 RNA binding motif protein 47 isoform a RBM47 0.279 RNA binding motif protein 47 isoform b A1CF 0.273 apobec-1 complementation factor isoform 2 A1CF 0.273 apobec-1 complementation factor isoform 1 RBM46 0.273 RNA binding motif protein 46 A1CF 0.259 apobec-1 complementation factor isoform 3 DND1 0.096 dead end homolog 1 PABPC4L 0.069 poly(A) binding protein, cytoplasmic 4-like PABPC4 0.061 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.061 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.061 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC3 0.057 poly(A) binding protein, cytoplasmic 3 PABPC1 0.054 poly(A) binding protein, cytoplasmic 1 PABPC1L 0.054 poly(A)-binding protein, cytoplasmic 1-like BRUNOL5 0.050 bruno-like 5, RNA binding protein isoform 1 HNRNPA1L2 0.047 heterogeneous nuclear ribonucleoprotein A1-like [Hom... HNRNPA1L2 0.047 heterogeneous nuclear ribonucleoprotein A1-like [Hom... HNRNPA1 0.046 heterogeneous nuclear ribonucleoprotein A1 isoform a ... BRUNOL4 0.046 bruno-like 4, RNA binding protein isoform 4 TNRC4 0.046 trinucleotide repeat containing 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.