Guide to the Human Genome
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Name: LOC100289676 Sequence: fasta or formatted (86aa) NCBI GI: 239750556
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {86aa} PREDICTED: hypothetical protein XP_002344121
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.9         18           2
 C cysteine            3.5          3           2
 D aspartate           2.3          2           1
 E glutamate           7.0          6           1
 F phenylalanine       0.0          0           0
 G glycine             9.3          8           1
 H histidine           2.3          2           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            11.6         10           1
 M methionine          1.2          1           1
 N asparagine          0.0          0           0
 P proline            11.6         10           2
 Q glutamine           7.0          6           2
 R arginine           10.5          9           3
 S serine              4.7          4           1
 T threonine           3.5          3           1
 V valine              3.5          3           1
 W tryptophan          1.2          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291643          1.000   PREDICTED: hypothetical protein XP_002344786 
LOC100289676          1.000   PREDICTED: hypothetical protein XP_002344121 
SRRM1                 0.072   serine/arginine repetitive matrix 1 
TAF4                  0.059   TBP-associated factor 4 
MTCH1                 0.053   mitochondrial carrier homolog 1 
BARHL2                0.046   BarH-like homeobox 2 
MICALL1               0.046   molecule interacting with Rab13 
FLJ39639              0.039   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.039   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.039   PREDICTED: hypothetical protein LOC283876 
LOC100293652          0.033   PREDICTED: hypothetical protein 
LOC100291016          0.033   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.033   PREDICTED: hypothetical protein XP_002343597 
CTTNBP2               0.033   cortactin binding protein 2 
ANO8                  0.033   anoctamin 8 
TNK1                  0.033   tyrosine kinase, non-receptor, 1 
CC2D1A                0.026   coiled-coil and C2 domain containing 1A 
DDX51                 0.026   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
LOC100292122          0.026   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.026   PREDICTED: hypothetical protein XP_002344191 
GRIN2D                0.026   N-methyl-D-aspartate receptor subunit 2D precursor ...
SYNCRIP               0.020   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.020   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.020   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.020   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.020   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.020   synaptotagmin binding, cytoplasmic RNA interacting ...
CBL                   0.020   Cas-Br-M (murine) ecotropic retroviral transforming ...
ATXN2                 0.020   ataxin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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