Guide to the Human Genome
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Name: LOC100291016 Sequence: fasta or formatted (346aa) NCBI GI: 239751318
Description:

PREDICTED: hypothetical protein XP_002347804

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         42           3
 C cysteine            0.9          3           1
 D aspartate           1.4          5           1
 E glutamate           5.8         20           2
 F phenylalanine       0.9          3           1
 G glycine            12.7         44           2
 H histidine           3.5         12           2
 I isoleucine          0.9          3           1
 K lysine              0.9          3           1
 L leucine            11.8         41           2
 M methionine          0.6          2           1
 N asparagine          0.3          1           1
 P proline            10.4         36           2
 Q glutamine           7.8         27           3
 R arginine           10.1         35           2
 S serine              3.8         13           2
 T threonine           2.6          9           2
 V valine             11.0         38           2
 W tryptophan          2.0          7           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          1.000   PREDICTED: hypothetical protein XP_002343597 
LOC100293652          0.784   PREDICTED: hypothetical protein 
LOC100132168          0.080   PREDICTED: hypothetical protein 
LOC100292754          0.032   PREDICTED: hypothetical protein 
LOC100290764          0.032   PREDICTED: hypothetical protein XP_002346421 
LOC100287607          0.032   PREDICTED: hypothetical protein XP_002342119 
LOC728767             0.021   PREDICTED: hypothetical protein 
LOC728767             0.021   PREDICTED: hypothetical protein 
CACNA1B               0.019   calcium channel, voltage-dependent, N type, alpha 1B ...
GLTSCR1               0.019   glioma tumor suppressor candidate region gene 1 [Ho...
LOC100292595          0.018   PREDICTED: hypothetical protein 
LOC100290895          0.018   PREDICTED: hypothetical protein XP_002348072 
LOC100287206          0.018   PREDICTED: hypothetical protein XP_002343750 
LOC100293492          0.018   PREDICTED: hypothetical protein 
LOC729162             0.016   PREDICTED: similar to hCG1981372 
LOC729162             0.016   PREDICTED: similar to hCG1981372 
LOC100288030          0.016   PREDICTED: hypothetical protein XP_002343812 
LOC375295             0.016   PREDICTED: hypothetical protein 
LOC389906             0.015   PREDICTED: similar to Serine/threonine-protein kina...
APC2                  0.015   adenomatosis polyposis coli 2 
HES1                  0.015   hairy and enhancer of split 1 
LOC100288108          0.015   PREDICTED: hypothetical protein 
LOC100288108          0.015   PREDICTED: hypothetical protein XP_002342919 
GPR162                0.015   G protein-coupled receptor 162 isoform 2 
GPR162                0.015   G protein-coupled receptor 162 isoform 1 
LOC100293818          0.015   PREDICTED: hypothetical protein 
LOC100132799          0.015   PREDICTED: hypothetical protein 
DDN                   0.015   dendrin 
SUPT6H                0.015   suppressor of Ty 6 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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