SYNCRIP 15665

Name: SYNCRIP	Sequence: fasta or formatted (527aa)		NCBI GI: 228008398
Description: synaptotagmin binding, cytoplasmic RNA interacting protein isoform 3		Referenced in: hnRNP RNA Editing and Other RNA Modifications
Other entries for this name: alt prot [623aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 1 alt prot [561aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 5 alt prot [588aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 4 alt prot [464aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 2 alt prot [562aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 6
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 42 2 C cysteine 0.8 4 1 D aspartate 6.5 34 2 E glutamate 7.8 41 2 F phenylalanine 3.8 20 1 G glycine 11.8 62 2 H histidine 2.1 11 1 I isoleucine 3.2 17 1 K lysine 7.4 39 3 L leucine 6.6 35 2 M methionine 1.7 9 2 N asparagine 3.2 17 2 P proline 5.3 28 3 Q glutamine 4.9 26 3 R arginine 6.8 36 1 S serine 3.8 20 2 T threonine 4.2 22 2 V valine 5.9 31 1 W tryptophan 0.2 1 1 Y tyrosine 6.1 32 4			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.983 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.977 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.975 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.958 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.802 synaptotagmin binding, cytoplasmic RNA interacting ... HNRNPR 0.765 heterogeneous nuclear ribonucleoprotein R isoform 2 [... HNRNPR 0.761 heterogeneous nuclear ribonucleoprotein R isoform 1... HNRNPR 0.638 heterogeneous nuclear ribonucleoprotein R isoform 4... HNRNPR 0.633 heterogeneous nuclear ribonucleoprotein R isoform 3... RBM47 0.263 RNA binding motif protein 47 isoform a RBM47 0.249 RNA binding motif protein 47 isoform b A1CF 0.246 apobec-1 complementation factor isoform 2 A1CF 0.246 apobec-1 complementation factor isoform 1 RBM46 0.243 RNA binding motif protein 46 A1CF 0.230 apobec-1 complementation factor isoform 3 DND1 0.093 dead end homolog 1 PABPC4L 0.062 poly(A) binding protein, cytoplasmic 4-like PABPC4 0.055 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.055 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.055 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... BRUNOL5 0.053 bruno-like 5, RNA binding protein isoform 1 BRUNOL4 0.049 bruno-like 4, RNA binding protein isoform 4 HNRNPD 0.046 heterogeneous nuclear ribonucleoprotein D isoform b ... TNRC4 0.046 trinucleotide repeat containing 4 HNRNPD 0.046 heterogeneous nuclear ribonucleoprotein D isoform a ... BRUNOL4 0.045 bruno-like 4, RNA binding protein isoform 3 BRUNOL4 0.045 bruno-like 4, RNA binding protein isoform 2 BRUNOL4 0.045 bruno-like 4, RNA binding protein isoform 1 BRUNOL6 0.044 bruno-like 6, RNA binding protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.