Guide to the Human Genome
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Name: SYNCRIP Sequence: fasta or formatted (561aa) NCBI GI: 228008293
Description:

synaptotagmin binding, cytoplasmic RNA interacting protein isoform 5

Referenced in:

hnRNP
RNA Editing and Other RNA Modifications

Other entries for this name:
alt prot [623aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 1
alt prot [588aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 4
alt prot [464aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 2
alt prot [527aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 3
alt prot [562aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         45           2
 C cysteine            0.7          4           1
 D aspartate           6.6         37           2
 E glutamate           7.8         44           2
 F phenylalanine       3.6         20           1
 G glycine            11.6         65           2
 H histidine           2.0         11           1
 I isoleucine          3.2         18           1
 K lysine              7.5         42           3
 L leucine             6.4         36           2
 M methionine          2.0         11           2
 N asparagine          3.2         18           2
 P proline             5.5         31           3
 Q glutamine           4.5         25           3
 R arginine            7.0         39           3
 S serine              3.7         21           2
 T threonine           4.1         23           2
 V valine              6.4         36           1
 W tryptophan          0.5          3           1
 Y tyrosine            5.7         32           4
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin binding, cytoplasmic RNA interacting ... 
SYNCRIP               0.996   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.982   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.916   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.902   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.826   synaptotagmin binding, cytoplasmic RNA interacting ...
HNRNPR                0.795   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
HNRNPR                0.791   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.676   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.671   heterogeneous nuclear ribonucleoprotein R isoform 3...
RBM47                 0.292   RNA binding motif protein 47 isoform a 
RBM47                 0.279   RNA binding motif protein 47 isoform b 
A1CF                  0.274   apobec-1 complementation factor isoform 2 
A1CF                  0.274   apobec-1 complementation factor isoform 1 
RBM46                 0.273   RNA binding motif protein 46 
A1CF                  0.260   apobec-1 complementation factor isoform 3 
DND1                  0.097   dead end homolog 1 
PABPC4L               0.069   poly(A) binding protein, cytoplasmic 4-like 
PABPC4                0.061   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.061   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.061   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC3                0.057   poly(A) binding protein, cytoplasmic 3 
PABPC1                0.054   poly(A) binding protein, cytoplasmic 1 
PABPC1L               0.054   poly(A)-binding protein, cytoplasmic 1-like 
BRUNOL5               0.051   bruno-like 5, RNA binding protein isoform 1 
HNRNPA1L2             0.047   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.047   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1               0.046   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
BRUNOL4               0.046   bruno-like 4, RNA binding protein isoform 4 
TNRC4                 0.046   trinucleotide repeat containing 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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