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Search of human proteins with 239755873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
(577 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 1190 0.0
gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo ... 477 e-134
gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo ... 468 e-132
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 48 3e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 6e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 47 6e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 47 6e-05
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-04
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-04
gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo ... 45 2e-04
gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo ... 45 2e-04
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 44 3e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 44 5e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 43 0.001
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 43 0.001
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 43 0.001
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 43 0.001
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 43 0.001
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 43 0.001
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 42 0.002
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 42 0.002
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 42 0.002
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 42 0.002
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 0.002
gi|239755454 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo ... 41 0.003
gi|48762934 alpha 2 type I collagen [Homo sapiens] 41 0.003
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 1190 bits (3078), Expect = 0.0
Identities = 577/577 (100%), Positives = 577/577 (100%)
Query: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
Query: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS
Sbjct: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
Query: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES
Sbjct: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
Query: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESPGSPQLCR 240
SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESPGSPQLCR
Sbjct: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESPGSPQLCR 240
Query: 241 VKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRK 300
VKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRK
Sbjct: 241 VKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRK 300
Query: 301 RYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRK 360
RYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRK
Sbjct: 301 RYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRK 360
Query: 361 SPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELGMSLR 420
SPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELGMSLR
Sbjct: 361 SPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELGMSLR 420
Query: 421 VWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAPGQSRG 480
VWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAPGQSRG
Sbjct: 421 VWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAPGQSRG 480
Query: 481 SLAPRPTGSAGRALAAARLFAPQRSAAQLPARCGCFGSARGMRAPRRLLVGAEETAGARS 540
SLAPRPTGSAGRALAAARLFAPQRSAAQLPARCGCFGSARGMRAPRRLLVGAEETAGARS
Sbjct: 481 SLAPRPTGSAGRALAAARLFAPQRSAAQLPARCGCFGSARGMRAPRRLLVGAEETAGARS 540
Query: 541 KRGKVLAHSPQSLASKHWHLNRLLPRHPFHCLLVLSL 577
KRGKVLAHSPQSLASKHWHLNRLLPRHPFHCLLVLSL
Sbjct: 541 KRGKVLAHSPQSLASKHWHLNRLLPRHPFHCLLVLSL 577
>gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo
sapiens]
Length = 233
Score = 477 bits (1228), Expect = e-134
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
Query: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS
Sbjct: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
Query: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES
Sbjct: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
Query: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233
SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP
Sbjct: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233
>gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo
sapiens]
Length = 232
Score = 468 bits (1205), Expect = e-132
Identities = 231/233 (99%), Positives = 231/233 (99%), Gaps = 1/233 (0%)
Query: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
Query: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPI LAVPGRSAPAVALACSRPFS
Sbjct: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPIR-LAVPGRSAPAVALACSRPFS 119
Query: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES
Sbjct: 120 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 179
Query: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233
SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP
Sbjct: 180 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 232
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 47.8 bits (112), Expect = 3e-05
Identities = 59/209 (28%), Positives = 75/209 (35%), Gaps = 32/209 (15%)
Query: 229 GDESPGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLG 288
GD P + + + L G A P GLT P P GL+ + +G
Sbjct: 530 GDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVG 589
Query: 289 PAG--ALRGRP-------RRKRYPEAGR--VPGARVQEPQRG-------AGEQKDQSAQG 330
P G ++G P RR R G +PG + RG GE+ + G
Sbjct: 590 PQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPG 649
Query: 331 PAAQPHPRPGILMLKTFGCRGFDAAVRKRKSP------ALSGQWQSPSP--PPALAGAPP 382
P+ P P PG G RG D V R P L G P P PP + G
Sbjct: 650 PSGPPGP-PG-----DDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDG 703
Query: 383 TPQQRQNFGPGCAGLSPRPEGPHGAGGCP 411
P + N GP P +G GA G P
Sbjct: 704 QPGPKGNVGPQGEPGPPGQQGNPGAQGLP 732
Score = 41.6 bits (96), Expect = 0.002
Identities = 70/244 (28%), Positives = 81/244 (33%), Gaps = 37/244 (15%)
Query: 271 PSQQ--PEGAGLRSKIWQLGPAGALR--GRPRRKRYPEAGRVPGARVQE-PQRGAGEQKD 325
P QQ P GL +GP G G+P P A PG +E P G Q
Sbjct: 720 PGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGP 779
Query: 326 QSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQ 385
QGP P PR G +G D + + G+ P G
Sbjct: 780 PGPQGPIGYPGPR---------GVKGADGIRGLKGTKGEKGE----DGFPGFKGDMGIKG 826
Query: 386 QRQNFGPGCAGLSPRPEGPHGAGG-----CPMGELGMSLRVWGTLLPLERARSLP--SWN 438
R GP PEGP G GG P+G G ++ LP R P S
Sbjct: 827 DRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIG 886
Query: 439 SRGFCGARRGGGSGRFLPG----------GGWRGARTKLRVCCTPAP-GQSRGSLAPRPT 487
GF GA G GR PG G RG R + P P G S G P
Sbjct: 887 FPGFPGA-NGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPP 945
Query: 488 GSAG 491
G G
Sbjct: 946 GERG 949
Score = 36.6 bits (83), Expect = 0.065
Identities = 41/149 (27%), Positives = 50/149 (33%), Gaps = 23/149 (15%)
Query: 273 QQPEGA-GLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEPQRGA-GEQKDQSAQG 330
Q P G GL+ + GPAG + E G PG + + +G G QG
Sbjct: 1128 QGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGE-PGQKGSKGDKGEQGPPGPTGPQG 1186
Query: 331 PAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQ--------WQSPSPPPALAGAPP 382
P QP P G D R L GQ + P P L G P
Sbjct: 1187 PIGQPGPS------------GADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPG 1234
Query: 383 TPQQRQNFGPGCAGLSPRPEGPHGAGGCP 411
P ++ G P P GP G G P
Sbjct: 1235 PPGEKGETGDVGQMGPPGPPGPRGPSGAP 1263
Score = 36.6 bits (83), Expect = 0.065
Identities = 49/173 (28%), Positives = 65/173 (37%), Gaps = 19/173 (10%)
Query: 257 EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGAL--RGRPRRKRYP-EAGRVPGARV 313
+GE P G T P QP +G + G G +G + +P G V +
Sbjct: 1173 KGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGL 1232
Query: 314 QEPQRGAGEQKDQSAQGPAAQPHPR-----PGILMLK-TFGCRGFDAAVRKRKSPALSGQ 367
P GE D GP P PR PG + G G AV ++ P +G+
Sbjct: 1233 PGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGE 1292
Query: 368 WQSPSPPPALAGAPPTPQ----QRQNFGPGCAGLSPRPEGPHGAGGCPMGELG 416
P G PP P+ ++ GP A P P+GP G G P G G
Sbjct: 1293 PGLPGE-----GGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDG-PKGSPG 1339
Score = 33.5 bits (75), Expect = 0.55
Identities = 35/128 (27%), Positives = 43/128 (33%), Gaps = 11/128 (8%)
Query: 286 QLGPAGALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPR--PGILM 343
Q GP G R R + G + P GE+ QGP P P+ PG
Sbjct: 911 QRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPG--- 967
Query: 344 LKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEG 403
G G +R G+ P PP + PT + GP P P G
Sbjct: 968 --PPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGET----GPMGERGHPGPPG 1021
Query: 404 PHGAGGCP 411
P G G P
Sbjct: 1022 PPGEQGLP 1029
Score = 32.0 bits (71), Expect = 1.6
Identities = 54/204 (26%), Positives = 68/204 (33%), Gaps = 32/204 (15%)
Query: 225 AADTGDESPGSPQ----LCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGL 280
A G+ P PQ KG D G+ TG P P G
Sbjct: 942 AGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGP 1001
Query: 281 RSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPG 340
+ + GP G RG P P +PG AG++ + GPA P + G
Sbjct: 1002 QGPTGETGPMGE-RGHPGPPGPPGEQGLPGL--------AGKEGTKGDPGPAGLPG-KDG 1051
Query: 341 ILMLKTF-GCRGFDAAVRKRKSPALSGQWQSPSPP----------PALA----GAPPTPQ 385
L+ F G RG V + L G P PP PA A G P P
Sbjct: 1052 PPGLRGFPGDRGLPGPVG---ALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPG 1108
Query: 386 QRQNFGPGCAGLSPRPEGPHGAGG 409
+ GP +P +GP G G
Sbjct: 1109 PQGPPGPAGEKGAPGEKGPQGPAG 1132
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.6 bits (109), Expect = 6e-05
Identities = 81/295 (27%), Positives = 98/295 (33%), Gaps = 58/295 (19%)
Query: 233 PGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGA 292
PG+ L +KG + D +G+A P G P +P G Q+GP
Sbjct: 256 PGTAGLPGMKGHRGFSGLD---GAKGDAGPAG------PKGEPGSPGENGAPGQMGP--- 303
Query: 293 LRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLK----TFG 348
RG P + P A GAR + GA + GPA P PG + K G
Sbjct: 304 -RGLPGERGRPGAPGPAGARGNDGATGAAGPPGPT--GPAGPPG-FPGAVGAKGEAGPQG 359
Query: 349 CRGFDAAVRKRKSPALSGQWQSPSPP-----------------PALAGAPPTPQQRQNFG 391
RG + R P G + P P +AGAP P R G
Sbjct: 360 PRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG 419
Query: 392 PGCAGLSPRPEGPHGAGGCP--MGELGMS-----LRVWGTLLPL-----ERARSLPSWNS 439
P G P P+G G G P G+ G + V G P AR P
Sbjct: 420 PQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTG 479
Query: 440 RGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLAPR-PTGSAGRA 493
RGG R PG V P RGS P P GS G A
Sbjct: 480 LPGPPGERGGPGSRGFPGAD--------GVAGPKGPAGERGSPGPAGPKGSPGEA 526
Score = 41.6 bits (96), Expect = 0.002
Identities = 51/146 (34%), Positives = 59/146 (40%), Gaps = 21/146 (14%)
Query: 288 GPAGALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQP-HPRP------- 339
GPAG G+ R AGR P AGE+ A GPA P P P
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR 958
Query: 340 GILMLK-TFGCRGF------DAAVRKRKSPALSGQWQSPSP--PPALAGAPPTPQQRQNF 390
G++ L G RGF K+ SG+ P P PP LAG PP R+
Sbjct: 959 GVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG-PPGESGREG- 1016
Query: 391 GPGCAGLSPRPEGPHGAGGCPMGELG 416
PG G SP +G GA G GE G
Sbjct: 1017 APGAEG-SPGRDGSPGAKG-DRGETG 1040
Score = 39.7 bits (91), Expect = 0.008
Identities = 64/208 (30%), Positives = 71/208 (34%), Gaps = 55/208 (26%)
Query: 227 DTGDESP----GSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRS 282
D GD P GSP V+GL G P G P+ P G
Sbjct: 744 DRGDAGPKGADGSPGKDGVRGL------------TGPIGPPG------PAGAPGDKGESG 785
Query: 283 KIWQLGPAGALRGRPRRKRYP----EAGRV--PGARVQEPQRGA-GEQKDQSAQGPAAQP 335
GP GA RG P + P AG PGA + Q GA GE D A+G A P
Sbjct: 786 PSGPAGPTGA-RGAPGDRGEPGPPGPAGFAGPPGA---DGQPGAKGEPGDAGAKGDAGPP 841
Query: 336 HPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPP-----PALAGAPPTPQQRQNF 390
P G G + +P G S PP P AG P N
Sbjct: 842 GPA---------GPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 892
Query: 391 GPGCAGLSPRPEGPHG--AGGCPMGELG 416
GP P P GP G G P GE G
Sbjct: 893 GP------PGPPGPAGKEGGKGPRGETG 914
Score = 39.3 bits (90), Expect = 0.010
Identities = 77/261 (29%), Positives = 90/261 (34%), Gaps = 50/261 (19%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEPQ 317
GE P G V P P AG + GPAGA G P + V G Q +
Sbjct: 911 GETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA-PGTPGPQGIAGQRGVVGLPGQRGE 969
Query: 318 RG----------AGEQKDQSAQGPAAQPHPR--PGIL----MLKTFGCRGFDAAVRKRKS 361
RG G+Q A G P P PG+ G G + + + S
Sbjct: 970 RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGS 1029
Query: 362 PALSGQ--WQSPSPPPALAGAPPTPQQRQNFGP-GCAGLS-----PRPEGPHGAGGCPMG 413
P G P+ PP GAP P GP G AG S P GP G G P+G
Sbjct: 1030 PGAKGDRGETGPAGPPGAPGAPGAP------GPVGPAGKSGDRGETGPAGPAGPVG-PVG 1082
Query: 414 ELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGG--GWRGARTKLRVCC 471
G + G P RG G R G SG P G G G +
Sbjct: 1083 ARGPA----GPQGPRGDKGETGEQGDRGIKGHR--GFSGLQGPPGPPGSPGEQ------- 1129
Query: 472 TPAPGQSRGSLAPR-PTGSAG 491
P + G PR P GSAG
Sbjct: 1130 --GPSGASGPAGPRGPPGSAG 1148
Score = 38.1 bits (87), Expect = 0.022
Identities = 82/285 (28%), Positives = 103/285 (36%), Gaps = 38/285 (13%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAG--ALRGRPRRKRYPEAGRVPGARVQE 315
G A P G P+ P GL GPAG G+P + P PG
Sbjct: 623 GPAGPAGERGEQGPAGSPGFQGLP------GPAGPPGEAGKPGEQGVPGDLGAPGPSGAR 676
Query: 316 PQRG-AGEQKDQSAQGPAAQ--PHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPS 372
+RG GE+ Q GPA + PG K G G A + +P L G P
Sbjct: 677 GERGFPGERGVQGPPGPAGPRGANGAPGNDGAK--GDAGAPGAPGSQGAPGLQGM---PG 731
Query: 373 PPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELGMSLRVWGTLLPLERAR 432
A AG P R + GP A SP +G G G P+G G + P ++
Sbjct: 732 ERGA-AGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG-PIGPPGPA------GAPGDKGE 783
Query: 433 SLPSWNSRGFCGARRGGGSGRFLPG-------GGWRGARTKLRVCCTPAPGQSRGSLA-P 484
S PS G GA RG R PG G GA + P ++G P
Sbjct: 784 SGPS-GPAGPTGA-RGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP 841
Query: 485 RPTGSAGRALAAARLFAP----QRSAAQLPARCGCFGSARGMRAP 525
P G AG + AP R +A P G G+A + P
Sbjct: 842 GPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886
Score = 37.7 bits (86), Expect = 0.029
Identities = 49/190 (25%), Positives = 61/190 (32%), Gaps = 26/190 (13%)
Query: 233 PGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGA 292
PG L KGL S G P G P P G + GP GA
Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA 588
Query: 293 LR--GRPRRKRYP-------EAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILM 343
G+ + P AG+ A Q P AG ++ QGPA P
Sbjct: 589 AGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP-------- 640
Query: 344 LKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLS--PRP 401
GF P +G+ P L P+ + + PG G+ P P
Sbjct: 641 -------GFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP 693
Query: 402 EGPHGAGGCP 411
GP GA G P
Sbjct: 694 AGPRGANGAP 703
Score = 31.2 bits (69), Expect = 2.7
Identities = 64/202 (31%), Positives = 74/202 (36%), Gaps = 39/202 (19%)
Query: 371 PSPPPALAGAP--PTPQQRQN-----FGPGCAG-LSPR-PEGPHGAGGCPMGELGMSLRV 421
PS P L G P P PQ Q PG +G + PR P GP G G GE G R
Sbjct: 183 PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNG-DDGEAGKPGRP 241
Query: 422 WGTLLP-LERARSLPSW-------NSRGFCGARRGGGSGRFLPGG--------GWRGART 465
P + AR LP RGF G G G P G G GA
Sbjct: 242 GERGPPGPQGARGLPGTAGLPGMKGHRGFSGL--DGAKGDAGPAGPKGEPGSPGENGAPG 299
Query: 466 KLRVCCTPAPGQSRGSLAPRPTGSAGR--ALAAARLFAPQRSAAQ--LPARCGCFGSARG 521
++ PG+ AP P G+ G A AA P A P G G A G
Sbjct: 300 QMGP--RGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA-G 356
Query: 522 MRAPRRLLVGAEETAGARSKRG 543
+ PR G+E G R + G
Sbjct: 357 PQGPR----GSEGPQGVRGEPG 374
Score = 29.6 bits (65), Expect = 7.9
Identities = 37/142 (26%), Positives = 44/142 (30%), Gaps = 26/142 (18%)
Query: 275 PEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQ 334
P G R + GP GA P A PG P AG+ D+ GPA
Sbjct: 1030 PGAKGDRGETGPAGPPGA----------PGAPGAPG-----PVGPAGKSGDRGETGPAGP 1074
Query: 335 PHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPP-----PALAGAPPTPQQRQN 389
P + G RG R +G+ L G P P
Sbjct: 1075 AGP------VGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE 1128
Query: 390 FGPGCAGLSPRPEGPHGAGGCP 411
GP A P GP G+ G P
Sbjct: 1129 QGPSGASGPAGPRGPPGSAGAP 1150
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 46.6 bits (109), Expect = 6e-05
Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 261 PPTGLTTAVVPSQQPEGAGLRSKI-----WQLGPAGALRGRPRRKRYPE---AGRVPGAR 312
PP G P Q +G L+ + L G G P +R P A + P ++
Sbjct: 462 PPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQ 521
Query: 313 VQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPS 372
P +G G Q A GP A P RP + R+ P + Q
Sbjct: 522 AAPPTQGQGRQSRPVAGGPGAPPAARP----------PASPSPQRQAGPPQATRQTSVSG 571
Query: 373 P-PPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHG 406
P PP +GAPP QQRQ G +P GP G
Sbjct: 572 PAPPKASGAPPGGQQRQ-------GPPQKPPGPAG 599
Score = 39.7 bits (91), Expect = 0.008
Identities = 57/234 (24%), Positives = 79/234 (33%), Gaps = 35/234 (14%)
Query: 205 TNALWLVAVVSDDHGNRWVEAADTGDESPGSPQLCRVKGLGEVNSSDLFLEGEGEAPP-- 262
T + L + D WV DT E G +C V+ L + D +E G + P
Sbjct: 339 TGSAMLEQIAMSDRYKLWV---DTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLI 395
Query: 263 ----------------TGLTTAVVPSQQPEGAGLRSKIWQLGPAGAL---RGRPRRKRYP 303
+ A+ +Q + + R Q GAL R ++ P
Sbjct: 396 GDHQDEDKQLIVELVVNKMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGP 455
Query: 304 EAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRP-GILMLKTFGCRGFDAAVRKRKSP 362
A + P + PQ G G Q+ QGP Q P P G L G ++ SP
Sbjct: 456 PAQQRPPPQGGPPQPGPGPQR----QGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSP 511
Query: 363 ALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELG 416
+ Q PA APPT Q + P G P A P + G
Sbjct: 512 TSAPQ------QPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAG 559
Score = 33.9 bits (76), Expect = 0.42
Identities = 40/158 (25%), Positives = 56/158 (35%), Gaps = 14/158 (8%)
Query: 255 EGEG-EAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALR-------GRPRRKRYPEAG 306
+G+G ++ P P+ +P + + Q GP A R P+ P G
Sbjct: 527 QGQGRQSRPVAGGPGAPPAARPPASPSPQR--QAGPPQATRQTSVSGPAPPKASGAPPGG 584
Query: 307 RVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSG 366
+ Q+P AG + S GP PR G + G A R + A
Sbjct: 585 QQRQGPPQKPPGPAGPTRQASQAGPV----PRTGPPTTQQPRPSGPGPAGRPKPQLAQKP 640
Query: 367 QWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGP 404
P P A AG PP PQ ++ A P P P
Sbjct: 641 SQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAPP 678
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 46.6 bits (109), Expect = 6e-05
Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 261 PPTGLTTAVVPSQQPEGAGLRSKI-----WQLGPAGALRGRPRRKRYPE---AGRVPGAR 312
PP G P Q +G L+ + L G G P +R P A + P ++
Sbjct: 462 PPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQ 521
Query: 313 VQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPS 372
P +G G Q A GP A P RP + R+ P + Q
Sbjct: 522 AAPPTQGQGRQSRPVAGGPGAPPAARP----------PASPSPQRQAGPPQATRQTSVSG 571
Query: 373 P-PPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHG 406
P PP +GAPP QQRQ G +P GP G
Sbjct: 572 PAPPKASGAPPGGQQRQ-------GPPQKPPGPAG 599
Score = 39.7 bits (91), Expect = 0.008
Identities = 57/234 (24%), Positives = 79/234 (33%), Gaps = 35/234 (14%)
Query: 205 TNALWLVAVVSDDHGNRWVEAADTGDESPGSPQLCRVKGLGEVNSSDLFLEGEGEAPP-- 262
T + L + D WV DT E G +C V+ L + D +E G + P
Sbjct: 339 TGSAMLEQIAMSDRYKLWV---DTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLI 395
Query: 263 ----------------TGLTTAVVPSQQPEGAGLRSKIWQLGPAGAL---RGRPRRKRYP 303
+ A+ +Q + + R Q GAL R ++ P
Sbjct: 396 GDHQDEDKQLIVELVVNKMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGP 455
Query: 304 EAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRP-GILMLKTFGCRGFDAAVRKRKSP 362
A + P + PQ G G Q+ QGP Q P P G L G ++ SP
Sbjct: 456 PAQQRPPPQGGPPQPGPGPQR----QGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSP 511
Query: 363 ALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELG 416
+ Q PA APPT Q + P G P A P + G
Sbjct: 512 TSAPQ------QPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAG 559
Score = 32.7 bits (73), Expect = 0.93
Identities = 36/139 (25%), Positives = 50/139 (35%), Gaps = 14/139 (10%)
Query: 255 EGEG-EAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALR-------GRPRRKRYPEAG 306
+G+G ++ P P+ +P + + Q GP A R P+ P G
Sbjct: 527 QGQGRQSRPVAGGPGAPPAARPPASPSPQR--QAGPPQATRQTSVSGPAPPKASGAPPGG 584
Query: 307 RVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSG 366
+ Q+P AG + S GP PR G + G A R + A
Sbjct: 585 QQRQGPPQKPPGPAGPTRQASQAGPV----PRTGPPTTQQPRPSGPGPAGRPKPQLAQKP 640
Query: 367 QWQSPSPPPALAGAPPTPQ 385
P P A AG PP PQ
Sbjct: 641 SQDVPPPATAAAGGPPHPQ 659
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 45.1 bits (105), Expect = 2e-04
Identities = 72/235 (30%), Positives = 93/235 (39%), Gaps = 46/235 (19%)
Query: 333 AQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGP 392
+Q HP P L F D R R++ G+ SPPPA GAP P +R + GP
Sbjct: 7 SQHHPFP----LGAFTLDQRDGKQRLRRT----GRAPPQSPPPAGPGAPGAPWRRGDEGP 58
Query: 393 GCAGLSPRPEGPHGA--GGCPMGELGMSLRVWGTLLPLERARSLPSW-NSRGFCGARRGG 449
G AG GP GA GGC G G V G L + + S SW +SR AR
Sbjct: 59 GPAG--GEAGGPCGAAPGGCASGGCG----VMGVSLTV--SLSFLSWSSSRCRVPARSSA 110
Query: 450 GSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLAPRPTGSAG----RALAAARLFAPQRS 505
S +LR+ A + ++AP + G R AA R P+ S
Sbjct: 111 AS----------ACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLS 160
Query: 506 AAQLPARCGCFGSARGMRAPRRLLVGA----------EETAGARSKRGKVLAHSP 550
LP+ G +R R L GA +TAG R++ G A P
Sbjct: 161 --WLPS-AGPPRPGLSVRRRRPLRPGAVRKSQPPGLRRQTAGGRARLGGARAVDP 212
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 45.1 bits (105), Expect = 2e-04
Identities = 72/235 (30%), Positives = 93/235 (39%), Gaps = 46/235 (19%)
Query: 333 AQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGP 392
+Q HP P L F D R R++ G+ SPPPA GAP P +R + GP
Sbjct: 7 SQHHPFP----LGAFTLDQRDGKQRLRRT----GRAPPQSPPPAGPGAPGAPWRRGDEGP 58
Query: 393 GCAGLSPRPEGPHGA--GGCPMGELGMSLRVWGTLLPLERARSLPSW-NSRGFCGARRGG 449
G AG GP GA GGC G G V G L + + S SW +SR AR
Sbjct: 59 GPAG--GEAGGPCGAAPGGCASGGCG----VMGVSLTV--SLSFLSWSSSRCRVPARSSA 110
Query: 450 GSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLAPRPTGSAG----RALAAARLFAPQRS 505
S +LR+ A + ++AP + G R AA R P+ S
Sbjct: 111 AS----------ACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLS 160
Query: 506 AAQLPARCGCFGSARGMRAPRRLLVGA----------EETAGARSKRGKVLAHSP 550
LP+ G +R R L GA +TAG R++ G A P
Sbjct: 161 --WLPS-AGPPRPGLSVRRRRPLRPGAVRKSQPPGLRRQTAGGRARLGGARAVDP 212
>gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
sapiens]
Length = 267
Score = 44.7 bits (104), Expect = 2e-04
Identities = 62/210 (29%), Positives = 79/210 (37%), Gaps = 21/210 (10%)
Query: 350 RGFDAAVRKRKSPALSGQWQ-SPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAG 408
RG A KR GQW+ SP P+ A A PQ R GC R E H +
Sbjct: 61 RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRA--ARGCELREGRAEAGHSST 118
Query: 409 GCPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGG-----GSGRFLPGGGWRGA 463
L T + + ++P +RG ARR G GR PGG G
Sbjct: 119 S-QKDTLSKGSAAAATAVAAGKHLAVPE--TRGGVPARRRETANPPGPGRARPGGSPFGH 175
Query: 464 RTKLRVCCTPAPGQSRGSLA-------PRPTGSAGRALAAARLFAPQRSAAQLPARCGCF 516
R L+ AP Q+ + P P GSA R+ A+ +RS PA G
Sbjct: 176 RPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGEL 235
Query: 517 GSARGMRAPRRLLVGAEETAGARSKRGKVL 546
R PR+ GA A RG+V+
Sbjct: 236 SIDREEGGPRQAPQGA---GHALEGRGRVI 262
>gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo
sapiens]
Length = 248
Score = 44.7 bits (104), Expect = 2e-04
Identities = 62/210 (29%), Positives = 79/210 (37%), Gaps = 21/210 (10%)
Query: 350 RGFDAAVRKRKSPALSGQWQ-SPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAG 408
RG A KR GQW+ SP P+ A A PQ R GC R E H +
Sbjct: 42 RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRA--ARGCELREGRAEAGHSST 99
Query: 409 GCPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGG-----GSGRFLPGGGWRGA 463
L T + + ++P +RG ARR G GR PGG G
Sbjct: 100 S-QKDTLSKGSAAAATAVAAGKHLAVPE--TRGGVPARRRETANPPGPGRARPGGSPFGH 156
Query: 464 RTKLRVCCTPAPGQSRGSLA-------PRPTGSAGRALAAARLFAPQRSAAQLPARCGCF 516
R L+ AP Q+ + P P GSA R+ A+ +RS PA G
Sbjct: 157 RPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGEL 216
Query: 517 GSARGMRAPRRLLVGAEETAGARSKRGKVL 546
R PR+ GA A RG+V+
Sbjct: 217 SIDREEGGPRQAPQGA---GHALEGRGRVI 243
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 44.3 bits (103), Expect = 3e-04
Identities = 72/235 (30%), Positives = 93/235 (39%), Gaps = 46/235 (19%)
Query: 333 AQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGP 392
+Q HP P L F D R R++ G+ SPPPA GAP P +R + GP
Sbjct: 7 SQHHPFP----LGAFTLDQRDGKQRLRRT----GRAPPQSPPPAGPGAPGAPWRRGDEGP 58
Query: 393 GCAGLSPRPEGPHGA--GGCPMGELGMSLRVWGTLLPLERARSLPSW-NSRGFCGARRGG 449
G AG GP GA GGC G G V G L + + S SW +SR AR
Sbjct: 59 GPAG--GEAGGPCGAAPGGCASGGCG----VMGVSLTV--SLSFLSWSSSRCRVPARSSA 110
Query: 450 GSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLAPRPTGSAG----RALAAARLFAPQRS 505
S +LR+ A + ++AP + G R AA R P+ S
Sbjct: 111 AS----------ACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLS 160
Query: 506 AAQLPARCGCFGSARGMRAPRRLLVGA----------EETAGARSKRGKVLAHSP 550
LP+ G +R R L GA +TAG R++ G A P
Sbjct: 161 --WLPS-AGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRARLGGARAVDP 212
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 44.3 bits (103), Expect = 3e-04
Identities = 57/191 (29%), Positives = 65/191 (34%), Gaps = 49/191 (25%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEPQ 317
G+A P GL V P QP GLR + G G LRG P P + Q
Sbjct: 123 GKAGPPGLPGKVGPPGQP---GLRGEPGIRGDQG-LRGPPGPPGLPGPSGITIPGKPGAQ 178
Query: 318 RGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPP--- 374
G Q GP +P P PG LK D V + P GQ +P PP
Sbjct: 179 GVPGPPGFQGEPGPQGEPGP-PGDRGLKG------DNGVGQPGLPGAPGQGGAPGPPGLP 231
Query: 375 -------PALAGAPPTPQQRQNFGP---------------------------GCAGLSPR 400
P L G P P + GP G AGL P
Sbjct: 232 GPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGL-PG 290
Query: 401 PEGPHGAGGCP 411
P+GP GA G P
Sbjct: 291 PQGPSGAKGEP 301
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 43.5 bits (101), Expect = 5e-04
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 20/166 (12%)
Query: 257 EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGAL--RGRPRRKRYPEAGRVPGARVQ 314
+GE P G+ + P + G R +GP G + RG P + +P + +PG +
Sbjct: 482 KGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGA 541
Query: 315 EPQRG-AGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSP 373
+ +RG G + +QG +P PG+ G RG +P + G P
Sbjct: 542 QGERGPVGSSGPKGSQGDPGRP-GEPGLP-----GARGLTG------NPGVQGPEGKLGP 589
Query: 374 --PPALAGAPPTPQQRQNFG-PGCAGLSPRPEGPHGAGGCPMGELG 416
P G P P G PG GL P P+G G G P GE G
Sbjct: 590 LGAPGEDGRPGPPGSIGIRGQPGSMGL-PGPKGSSGDPGKP-GEAG 633
Score = 38.9 bits (89), Expect = 0.013
Identities = 62/218 (28%), Positives = 82/218 (37%), Gaps = 43/218 (19%)
Query: 233 PGSPQLCRVKG----------LGEVNSSDLFLEGEGEAPPTGLTTAV-------VPSQQ- 274
PG+P L +KG GEV + +GEA PTG A+ +P ++
Sbjct: 290 PGAPGLPGLKGHRGHKGLEGPKGEVGAPG----SKGEAGPTGPMGAMGPLGPRGMPGERG 345
Query: 275 ---PEGA----GLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEPQRGA-GEQKDQ 326
P+GA G + GP G L G P +P PG + + GA G + Q
Sbjct: 346 RLGPQGAPGQRGAHGMPGKPGPMGPL-GIPGSSGFPGN---PGMKGEAGPTGARGPEGPQ 401
Query: 327 SAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQ 386
+G P P + G G A SP SG S PP + T Q
Sbjct: 402 GQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQ 461
Query: 387 RQNFGPGCAGL-------SPRPE-GPHGAGGCPMGELG 416
PG G+ P+ E GPHG G P+G G
Sbjct: 462 GIRGQPGDPGVPGFKGEAGPKGEPGPHGIQG-PIGPPG 498
Score = 36.2 bits (82), Expect = 0.084
Identities = 41/144 (28%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 288 GPAGALRGRPRRKRYPEAGRVPGARVQEPQRGA----GEQKDQSAQGPAAQPHPRPGILM 343
GP G L+G P + G R ++GA G + GP P P
Sbjct: 756 GPPG-LQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGE 814
Query: 344 LKTFGCRGFDAAVRKRKSPALSGQW-----------QSPSPPPALAGAPPTPQQRQNFG- 391
G RG R +P G+ Q P P + G P P Q+ + G
Sbjct: 815 KGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGS 874
Query: 392 PGCAGL--SPRPEGPHGAGGCPMG 413
PG GL SP P GP+G G G
Sbjct: 875 PGPQGLAGSPGPHGPNGVPGLKGG 898
Score = 34.7 bits (78), Expect = 0.25
Identities = 57/206 (27%), Positives = 64/206 (31%), Gaps = 30/206 (14%)
Query: 224 EAADTGDE-SPGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLT-----TAVVPSQQPEG 277
E GD SPG L G N G G P G T V P G
Sbjct: 865 EPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAG 924
Query: 278 AGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEPQRGA----GEQKDQSAQGPAA 333
A GPAG L G P ++ P PG+ + RG G D+ G
Sbjct: 925 AP--------GPAGPL-GEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDG 975
Query: 334 QPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGPG 393
QP P T G RG +R + G P P PT PG
Sbjct: 976 QPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGL---PGPAGTPGKVGPTGATGDKGPPG 1032
Query: 394 CAGL--------SPRPEGPHGAGGCP 411
G P PEGP G G P
Sbjct: 1033 PVGPPGSNGPVGEPGPEGPAGNDGTP 1058
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 42.7 bits (99), Expect = 0.001
Identities = 55/189 (29%), Positives = 72/189 (38%), Gaps = 38/189 (20%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGAL--------RGRPRRKRYPEA--GR 307
G P GLT P P +G + + GP G G+P ++ P A GR
Sbjct: 541 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGR 600
Query: 308 -VPGARVQEPQRG-------AGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKR 359
+PG + RG G++ + +GP P P PG G RG D + R
Sbjct: 601 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PG-----DDGMRGEDGEIGPR 654
Query: 360 KSPA------LSGQWQSPSPP--PALAGAPPTPQQRQNFG----PGCAGLSPRPEGPHGA 407
P L G +P P P +AG P + N G PG G P GP G
Sbjct: 655 GLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP-GPQGL 713
Query: 408 GGCPMGELG 416
G P G +G
Sbjct: 714 PG-PQGPIG 721
Score = 40.4 bits (93), Expect = 0.004
Identities = 75/279 (26%), Positives = 92/279 (32%), Gaps = 58/279 (20%)
Query: 232 SPGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAG 291
+PG P + V G + + +GE P G P GL +GP G
Sbjct: 674 APGQPGMAGVDGPPGPKGN---MGPQGEPGPPG------QQGNPGPQGLPGPQGPIGPPG 724
Query: 292 AL--RGRPRRKRYPEAGRVPGARVQEPQRGA-GEQKDQSAQGPAAQPHPRPGILMLKTFG 348
+G+P P A PG +E Q G G QGP P PR G
Sbjct: 725 EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR---------G 775
Query: 349 CRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPR----PEGP 404
+G D + S G+ P G R G + PR PEGP
Sbjct: 776 VKGADGVRGLKGSKGEKGE----DGFPGFKGDMGLKGDRGEVGQ----IGPRGEDGPEGP 827
Query: 405 HGAGGC-----PMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGG 459
G G P G+ G ++ LP R P S GF G F G
Sbjct: 828 KGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-GSTGFPG---------FPGANG 877
Query: 460 WRGARTKLRVCCTPAPGQSRGSLAPR-------PTGSAG 491
+GAR V P P RG PR PTG G
Sbjct: 878 EKGARG---VAGKPGPRGQRGPTGPRGSRGARGPTGKPG 913
Score = 38.9 bits (89), Expect = 0.013
Identities = 50/162 (30%), Positives = 62/162 (38%), Gaps = 30/162 (18%)
Query: 257 EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEP 316
+G+ P G VV Q P G + GP G RG P P +PGA +E
Sbjct: 969 QGKTGPPG-PGGVVGPQGPTG--------ETGPIGE-RGHPGPPGPPGEQGLPGAAGKEG 1018
Query: 317 QRG-AGEQKDQSAQGPAAQPHPRPGILMLKTF-GCRGFDAAVRKRKSPALSGQWQSPSPP 374
+G G Q GPA L+ F G RG A + +P L G + P P
Sbjct: 1019 AKGDPGPQGISGKDGPAG----------LRGFPGERGLPGA---QGAPGLKGG-EGPQGP 1064
Query: 375 PALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELG 416
P G+P GP P P+GP G P GE G
Sbjct: 1065 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPG----PAGEKG 1102
Score = 33.5 bits (75), Expect = 0.55
Identities = 54/199 (27%), Positives = 68/199 (34%), Gaps = 52/199 (26%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKR---------YPEAGRV 308
GE P G P+ P +G + +LG G L G P R+ +P A
Sbjct: 820 GEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPG-LPGYPGRQGPKGSTGFPGFPGANGE 878
Query: 309 PGAR--VQEP----QRG-AGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKS 361
GAR +P QRG G + + A+GP +P P+ T G G +R
Sbjct: 879 KGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKG------TSGGDGPPGPPGERGP 932
Query: 362 PALSGQWQSPSP-----PPALAGAPPTPQQRQNFG-------PGCAGL------------ 397
G P P PP G P P QR G PG G+
Sbjct: 933 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 992
Query: 398 -----SPRPEGPHGAGGCP 411
P P GP G G P
Sbjct: 993 IGERGHPGPPGPPGEQGLP 1011
Score = 33.5 bits (75), Expect = 0.55
Identities = 59/210 (28%), Positives = 70/210 (33%), Gaps = 27/210 (12%)
Query: 219 GNRWVEAADTGDESPGSPQLCRVKGLGEVNSSDLFLEGEGEAP-PTGLTTAVVPSQQPEG 277
G + AD PGS + V G+GE GE P P G P +
Sbjct: 1240 GPQGPNGADGPQGPPGS--VGSVGGVGEKGEP-----GEAGNPGPPGEAGVGGPKGERGE 1292
Query: 278 AGLRSKIWQLGPAGAL--------RGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQ 329
G GP GA +G P +P PG Q G G K +
Sbjct: 1293 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGED-- 1350
Query: 330 GPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQW--QSPSPPPALAGAPPTPQQR 387
G QP P PG G G KR P +G Q AGA P +
Sbjct: 1351 GDPGQPGP-PG-----PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1404
Query: 388 QNFGPGCAGLSPRPEGPHGAGGCPMGELGM 417
GP P PEG G G P+GE G+
Sbjct: 1405 GPVGPQGPAGKPGPEGLRGIPG-PVGEQGL 1433
Score = 30.4 bits (67), Expect = 4.6
Identities = 45/179 (25%), Positives = 62/179 (34%), Gaps = 21/179 (11%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALR--GRPRRKRYPEAGRVPGARVQE 315
G A P GL P P AG + + GP G G P G+ ++
Sbjct: 1078 GTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGED 1137
Query: 316 PQRGA----GEQKDQSAQGPAAQPHPRPGIL-MLKTFGCRGFDAAVRKRKSPALSGQ--- 367
+G G++ + +G P P PG+ + G G D R + GQ
Sbjct: 1138 GDKGEIGEPGQKGSKGDKGENGPPGP-PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGD 1196
Query: 368 -----WQSPSPPPALAGAPPTPQQRQ---NFGPGCAGLSPRPEGPHGAGGC--PMGELG 416
+ P P L G P P ++ + GP P P GP G G P G G
Sbjct: 1197 EGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1255
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 42.7 bits (99), Expect = 0.001
Identities = 55/189 (29%), Positives = 72/189 (38%), Gaps = 38/189 (20%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGAL--------RGRPRRKRYPEA--GR 307
G P GLT P P +G + + GP G G+P ++ P A GR
Sbjct: 490 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGR 549
Query: 308 -VPGARVQEPQRG-------AGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKR 359
+PG + RG G++ + +GP P P PG G RG D + R
Sbjct: 550 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PG-----DDGMRGEDGEIGPR 603
Query: 360 KSPA------LSGQWQSPSPP--PALAGAPPTPQQRQNFG----PGCAGLSPRPEGPHGA 407
P L G +P P P +AG P + N G PG G P GP G
Sbjct: 604 GLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP-GPQGL 662
Query: 408 GGCPMGELG 416
G P G +G
Sbjct: 663 PG-PQGPIG 670
Score = 40.4 bits (93), Expect = 0.004
Identities = 75/279 (26%), Positives = 92/279 (32%), Gaps = 58/279 (20%)
Query: 232 SPGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAG 291
+PG P + V G + + +GE P G P GL +GP G
Sbjct: 623 APGQPGMAGVDGPPGPKGN---MGPQGEPGPPG------QQGNPGPQGLPGPQGPIGPPG 673
Query: 292 AL--RGRPRRKRYPEAGRVPGARVQEPQRGA-GEQKDQSAQGPAAQPHPRPGILMLKTFG 348
+G+P P A PG +E Q G G QGP P PR G
Sbjct: 674 EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR---------G 724
Query: 349 CRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPR----PEGP 404
+G D + S G+ P G R G + PR PEGP
Sbjct: 725 VKGADGVRGLKGSKGEKGE----DGFPGFKGDMGLKGDRGEVGQ----IGPRGEDGPEGP 776
Query: 405 HGAGGC-----PMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGG 459
G G P G+ G ++ LP R P S GF G F G
Sbjct: 777 KGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-GSTGFPG---------FPGANG 826
Query: 460 WRGARTKLRVCCTPAPGQSRGSLAPR-------PTGSAG 491
+GAR V P P RG PR PTG G
Sbjct: 827 EKGARG---VAGKPGPRGQRGPTGPRGSRGARGPTGKPG 862
Score = 38.9 bits (89), Expect = 0.013
Identities = 50/162 (30%), Positives = 62/162 (38%), Gaps = 30/162 (18%)
Query: 257 EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEP 316
+G+ P G VV Q P G + GP G RG P P +PGA +E
Sbjct: 918 QGKTGPPG-PGGVVGPQGPTG--------ETGPIGE-RGHPGPPGPPGEQGLPGAAGKEG 967
Query: 317 QRG-AGEQKDQSAQGPAAQPHPRPGILMLKTF-GCRGFDAAVRKRKSPALSGQWQSPSPP 374
+G G Q GPA L+ F G RG A + +P L G + P P
Sbjct: 968 AKGDPGPQGISGKDGPAG----------LRGFPGERGLPGA---QGAPGLKGG-EGPQGP 1013
Query: 375 PALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELG 416
P G+P GP P P+GP G P GE G
Sbjct: 1014 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPG----PAGEKG 1051
Score = 33.5 bits (75), Expect = 0.55
Identities = 54/199 (27%), Positives = 68/199 (34%), Gaps = 52/199 (26%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKR---------YPEAGRV 308
GE P G P+ P +G + +LG G L G P R+ +P A
Sbjct: 769 GEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPG-LPGYPGRQGPKGSTGFPGFPGANGE 827
Query: 309 PGAR--VQEP----QRG-AGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKS 361
GAR +P QRG G + + A+GP +P P+ T G G +R
Sbjct: 828 KGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKG------TSGGDGPPGPPGERGP 881
Query: 362 PALSGQWQSPSP-----PPALAGAPPTPQQRQNFG-------PGCAGL------------ 397
G P P PP G P P QR G PG G+
Sbjct: 882 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 941
Query: 398 -----SPRPEGPHGAGGCP 411
P P GP G G P
Sbjct: 942 IGERGHPGPPGPPGEQGLP 960
Score = 33.5 bits (75), Expect = 0.55
Identities = 59/210 (28%), Positives = 70/210 (33%), Gaps = 27/210 (12%)
Query: 219 GNRWVEAADTGDESPGSPQLCRVKGLGEVNSSDLFLEGEGEAP-PTGLTTAVVPSQQPEG 277
G + AD PGS + V G+GE GE P P G P +
Sbjct: 1189 GPQGPNGADGPQGPPGS--VGSVGGVGEKGEP-----GEAGNPGPPGEAGVGGPKGERGE 1241
Query: 278 AGLRSKIWQLGPAGAL--------RGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQ 329
G GP GA +G P +P PG Q G G K +
Sbjct: 1242 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGED-- 1299
Query: 330 GPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQW--QSPSPPPALAGAPPTPQQR 387
G QP P PG G G KR P +G Q AGA P +
Sbjct: 1300 GDPGQPGP-PG-----PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1353
Query: 388 QNFGPGCAGLSPRPEGPHGAGGCPMGELGM 417
GP P PEG G G P+GE G+
Sbjct: 1354 GPVGPQGPAGKPGPEGLRGIPG-PVGEQGL 1382
Score = 30.4 bits (67), Expect = 4.6
Identities = 45/179 (25%), Positives = 62/179 (34%), Gaps = 21/179 (11%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALR--GRPRRKRYPEAGRVPGARVQE 315
G A P GL P P AG + + GP G G P G+ ++
Sbjct: 1027 GTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGED 1086
Query: 316 PQRGA----GEQKDQSAQGPAAQPHPRPGIL-MLKTFGCRGFDAAVRKRKSPALSGQ--- 367
+G G++ + +G P P PG+ + G G D R + GQ
Sbjct: 1087 GDKGEIGEPGQKGSKGDKGENGPPGP-PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGD 1145
Query: 368 -----WQSPSPPPALAGAPPTPQQRQ---NFGPGCAGLSPRPEGPHGAGGC--PMGELG 416
+ P P L G P P ++ + GP P P GP G G P G G
Sbjct: 1146 EGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1204
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 42.7 bits (99), Expect = 0.001
Identities = 55/189 (29%), Positives = 72/189 (38%), Gaps = 38/189 (20%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGAL--------RGRPRRKRYPEA--GR 307
G P GLT P P +G + + GP G G+P ++ P A GR
Sbjct: 529 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGR 588
Query: 308 -VPGARVQEPQRG-------AGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKR 359
+PG + RG G++ + +GP P P PG G RG D + R
Sbjct: 589 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PG-----DDGMRGEDGEIGPR 642
Query: 360 KSPA------LSGQWQSPSPP--PALAGAPPTPQQRQNFG----PGCAGLSPRPEGPHGA 407
P L G +P P P +AG P + N G PG G P GP G
Sbjct: 643 GLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP-GPQGL 701
Query: 408 GGCPMGELG 416
G P G +G
Sbjct: 702 PG-PQGPIG 709
Score = 40.4 bits (93), Expect = 0.004
Identities = 75/279 (26%), Positives = 92/279 (32%), Gaps = 58/279 (20%)
Query: 232 SPGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAG 291
+PG P + V G + + +GE P G P GL +GP G
Sbjct: 662 APGQPGMAGVDGPPGPKGN---MGPQGEPGPPG------QQGNPGPQGLPGPQGPIGPPG 712
Query: 292 AL--RGRPRRKRYPEAGRVPGARVQEPQRGA-GEQKDQSAQGPAAQPHPRPGILMLKTFG 348
+G+P P A PG +E Q G G QGP P PR G
Sbjct: 713 EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR---------G 763
Query: 349 CRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPR----PEGP 404
+G D + S G+ P G R G + PR PEGP
Sbjct: 764 VKGADGVRGLKGSKGEKGE----DGFPGFKGDMGLKGDRGEVGQ----IGPRGEDGPEGP 815
Query: 405 HGAGGC-----PMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGG 459
G G P G+ G ++ LP R P S GF G F G
Sbjct: 816 KGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-GSTGFPG---------FPGANG 865
Query: 460 WRGARTKLRVCCTPAPGQSRGSLAPR-------PTGSAG 491
+GAR V P P RG PR PTG G
Sbjct: 866 EKGARG---VAGKPGPRGQRGPTGPRGSRGARGPTGKPG 901
Score = 38.9 bits (89), Expect = 0.013
Identities = 50/162 (30%), Positives = 62/162 (38%), Gaps = 30/162 (18%)
Query: 257 EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEP 316
+G+ P G VV Q P G + GP G RG P P +PGA +E
Sbjct: 957 QGKTGPPG-PGGVVGPQGPTG--------ETGPIGE-RGHPGPPGPPGEQGLPGAAGKEG 1006
Query: 317 QRG-AGEQKDQSAQGPAAQPHPRPGILMLKTF-GCRGFDAAVRKRKSPALSGQWQSPSPP 374
+G G Q GPA L+ F G RG A + +P L G + P P
Sbjct: 1007 AKGDPGPQGISGKDGPAG----------LRGFPGERGLPGA---QGAPGLKGG-EGPQGP 1052
Query: 375 PALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELG 416
P G+P GP P P+GP G P GE G
Sbjct: 1053 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPG----PAGEKG 1090
Score = 33.5 bits (75), Expect = 0.55
Identities = 54/199 (27%), Positives = 68/199 (34%), Gaps = 52/199 (26%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKR---------YPEAGRV 308
GE P G P+ P +G + +LG G L G P R+ +P A
Sbjct: 808 GEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPG-LPGYPGRQGPKGSTGFPGFPGANGE 866
Query: 309 PGAR--VQEP----QRG-AGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKS 361
GAR +P QRG G + + A+GP +P P+ T G G +R
Sbjct: 867 KGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKG------TSGGDGPPGPPGERGP 920
Query: 362 PALSGQWQSPSP-----PPALAGAPPTPQQRQNFG-------PGCAGL------------ 397
G P P PP G P P QR G PG G+
Sbjct: 921 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 980
Query: 398 -----SPRPEGPHGAGGCP 411
P P GP G G P
Sbjct: 981 IGERGHPGPPGPPGEQGLP 999
Score = 33.5 bits (75), Expect = 0.55
Identities = 59/210 (28%), Positives = 70/210 (33%), Gaps = 27/210 (12%)
Query: 219 GNRWVEAADTGDESPGSPQLCRVKGLGEVNSSDLFLEGEGEAP-PTGLTTAVVPSQQPEG 277
G + AD PGS + V G+GE GE P P G P +
Sbjct: 1228 GPQGPNGADGPQGPPGS--VGSVGGVGEKGEP-----GEAGNPGPPGEAGVGGPKGERGE 1280
Query: 278 AGLRSKIWQLGPAGAL--------RGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQ 329
G GP GA +G P +P PG Q G G K +
Sbjct: 1281 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGED-- 1338
Query: 330 GPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQW--QSPSPPPALAGAPPTPQQR 387
G QP P PG G G KR P +G Q AGA P +
Sbjct: 1339 GDPGQPGP-PG-----PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1392
Query: 388 QNFGPGCAGLSPRPEGPHGAGGCPMGELGM 417
GP P PEG G G P+GE G+
Sbjct: 1393 GPVGPQGPAGKPGPEGLRGIPG-PVGEQGL 1421
Score = 30.4 bits (67), Expect = 4.6
Identities = 45/179 (25%), Positives = 62/179 (34%), Gaps = 21/179 (11%)
Query: 258 GEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALR--GRPRRKRYPEAGRVPGARVQE 315
G A P GL P P AG + + GP G G P G+ ++
Sbjct: 1066 GTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGED 1125
Query: 316 PQRGA----GEQKDQSAQGPAAQPHPRPGIL-MLKTFGCRGFDAAVRKRKSPALSGQ--- 367
+G G++ + +G P P PG+ + G G D R + GQ
Sbjct: 1126 GDKGEIGEPGQKGSKGDKGENGPPGP-PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGD 1184
Query: 368 -----WQSPSPPPALAGAPPTPQQRQ---NFGPGCAGLSPRPEGPHGAGGC--PMGELG 416
+ P P L G P P ++ + GP P P GP G G P G G
Sbjct: 1185 EGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1243
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 42.7 bits (99), Expect = 0.001
Identities = 74/273 (27%), Positives = 92/273 (33%), Gaps = 35/273 (12%)
Query: 233 PGSPQL-CRVKGLGEVNSSDLFLEG-EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPA 290
PG P L C V LG + + G +G P G +P G K GP
Sbjct: 778 PGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQ 837
Query: 291 GALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHP--RPGILMLKTFG 348
G +P G + + G GE+ QGP P P R L
Sbjct: 838 G----------FPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDME 887
Query: 349 CRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQ---RQNFGPGCAGLS--PRPEG 403
GF + + P + P PP + G P P + + PG AGL P EG
Sbjct: 888 GSGFGGDLEALRGPR---GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREG 944
Query: 404 PHGAGGCPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGGWRGA 463
P G G P G G G P R S G G + G+ PG GA
Sbjct: 945 PPGFPGLP-GPPGPP----GREGPPGRTGQKGSLGEAGAPGHKGSKGA----PGPA--GA 993
Query: 464 RTKLRVCCTPAPGQSRGSLAPRPTGSAGRALAA 496
R + + P P G P P G G L A
Sbjct: 994 RGESGLAGAPGPAGPPG--PPGPPGPPGPGLPA 1024
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 42.7 bits (99), Expect = 0.001
Identities = 74/273 (27%), Positives = 92/273 (33%), Gaps = 35/273 (12%)
Query: 233 PGSPQL-CRVKGLGEVNSSDLFLEG-EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPA 290
PG P L C V LG + + G +G P G +P G K GP
Sbjct: 363 PGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQ 422
Query: 291 GALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHP--RPGILMLKTFG 348
G +P G + + G GE+ QGP P P R L
Sbjct: 423 G----------FPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDME 472
Query: 349 CRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQ---RQNFGPGCAGLS--PRPEG 403
GF + + P + P PP + G P P + + PG AGL P EG
Sbjct: 473 GSGFGGDLEALRGPR---GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREG 529
Query: 404 PHGAGGCPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGGWRGA 463
P G G P G G G P R S G G + G+ PG GA
Sbjct: 530 PPGFPGLP-GPPGPP----GREGPPGRTGQKGSLGEAGAPGHKGSKGA----PGPA--GA 578
Query: 464 RTKLRVCCTPAPGQSRGSLAPRPTGSAGRALAA 496
R + + P P G P P G G L A
Sbjct: 579 RGESGLAGAPGPAGPPG--PPGPPGPPGPGLPA 609
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 42.7 bits (99), Expect = 0.001
Identities = 74/273 (27%), Positives = 92/273 (33%), Gaps = 35/273 (12%)
Query: 233 PGSPQL-CRVKGLGEVNSSDLFLEG-EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPA 290
PG P L C V LG + + G +G P G +P G K GP
Sbjct: 543 PGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQ 602
Query: 291 GALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHP--RPGILMLKTFG 348
G +P G + + G GE+ QGP P P R L
Sbjct: 603 G----------FPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDME 652
Query: 349 CRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQ---RQNFGPGCAGLS--PRPEG 403
GF + + P + P PP + G P P + + PG AGL P EG
Sbjct: 653 GSGFGGDLEALRGPR---GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREG 709
Query: 404 PHGAGGCPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFLPGGGWRGA 463
P G G P G G G P R S G G + G+ PG GA
Sbjct: 710 PPGFPGLP-GPPGPP----GREGPPGRTGQKGSLGEAGAPGHKGSKGA----PGPA--GA 758
Query: 464 RTKLRVCCTPAPGQSRGSLAPRPTGSAGRALAA 496
R + + P P G P P G G L A
Sbjct: 759 RGESGLAGAPGPAGPPG--PPGPPGPPGPGLPA 789
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 42.0 bits (97), Expect = 0.002
Identities = 60/219 (27%), Positives = 83/219 (37%), Gaps = 39/219 (17%)
Query: 262 PTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGR-----PRRKRYPEAGRVPGARVQEP 316
P GLT + GA + + +L P G RGR P R+R E RV + Q
Sbjct: 170 PGGLTQGEFAGRGAGGARVTHRPGRLRPRGRGRGRARRTCPARRRGEEDLRVQDSCPQAG 229
Query: 317 QRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPA 376
R G+++ A+G A+ R G+ C G ++KR GQ
Sbjct: 230 CRAMGQRRVLKAEG--ARARARGGV-------CFGPRPGMQKRSGGGSGGQ--------R 272
Query: 377 LAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELGMSLRVWGTLLPLERARSLPS 436
G P P R++ C ++ R GAG P RV G++ P +L S
Sbjct: 273 AGGWQPGPSVRES----CIDMAGRERPSRGAGQRPQ-------RVRGSVGPW----NLGS 317
Query: 437 WNSRGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAP 475
+ R G S R G RG K+ C TP P
Sbjct: 318 LGKKNKQETNRRGSSLRAAWSG--RGRFRKVGTCPTPGP 354
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 42.0 bits (97), Expect = 0.002
Identities = 60/219 (27%), Positives = 83/219 (37%), Gaps = 39/219 (17%)
Query: 262 PTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGR-----PRRKRYPEAGRVPGARVQEP 316
P GLT + GA + + +L P G RGR P R+R E RV + Q
Sbjct: 170 PGGLTQGEFAGRGAGGARVTHRPGRLRPRGRGRGRARRTCPARRRGEEDLRVQDSCPQAG 229
Query: 317 QRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPA 376
R G+++ A+G A+ R G+ C G ++KR GQ
Sbjct: 230 CRAMGQRRVLKAEG--ARARARGGV-------CFGPRPGMQKRSGGGSGGQ--------R 272
Query: 377 LAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCPMGELGMSLRVWGTLLPLERARSLPS 436
G P P R++ C ++ R GAG P RV G++ P +L S
Sbjct: 273 AGGWQPGPSVRES----CIDMAGRERPSRGAGQRPQ-------RVRGSVGPW----NLGS 317
Query: 437 WNSRGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAP 475
+ R G S R G RG K+ C TP P
Sbjct: 318 LGKKNKQETNRRGSSLRAAWSG--RGRFRKVGTCPTPGP 354
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 26/142 (18%)
Query: 279 GLRSKIWQLGPAGALRGRPRRKR---YP-EAGRVPGARVQEPQRGAGEQKDQSAQGPAAQ 334
G + K+ ++GP G +G P + YP EAG GE+ DQ +G +
Sbjct: 331 GQKGKLGRIGPPGC-KGDPGNRGPDGYPGEAG------------SPGERGDQGGKGDPGR 377
Query: 335 PHPR--PGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSP-----PPALAGAPPTPQQR 387
P R PG + K G +G+ SP + G P P P G P T
Sbjct: 378 PGRRGPPGEIGAK--GSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSP 435
Query: 388 QNFGPGCAGLSPRPEGPHGAGG 409
+ GP P PEGP G G
Sbjct: 436 GSDGPKGEKGDPGPEGPRGLAG 457
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 26/142 (18%)
Query: 279 GLRSKIWQLGPAGALRGRPRRKR---YP-EAGRVPGARVQEPQRGAGEQKDQSAQGPAAQ 334
G + K+ ++GP G +G P + YP EAG GE+ DQ +G +
Sbjct: 331 GQKGKLGRIGPPGC-KGDPGNRGPDGYPGEAG------------SPGERGDQGGKGDPGR 377
Query: 335 PHPR--PGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSP-----PPALAGAPPTPQQR 387
P R PG + K G +G+ SP + G P P P G P T
Sbjct: 378 PGRRGPPGEIGAK--GSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSP 435
Query: 388 QNFGPGCAGLSPRPEGPHGAGG 409
+ GP P PEGP G G
Sbjct: 436 GSDGPKGEKGDPGPEGPRGLAG 457
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 26/142 (18%)
Query: 279 GLRSKIWQLGPAGALRGRPRRKR---YP-EAGRVPGARVQEPQRGAGEQKDQSAQGPAAQ 334
G + K+ ++GP G +G P + YP EAG GE+ DQ +G +
Sbjct: 331 GQKGKLGRIGPPGC-KGDPGNRGPDGYPGEAG------------SPGERGDQGGKGDPGR 377
Query: 335 PHPR--PGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSP-----PPALAGAPPTPQQR 387
P R PG + K G +G+ SP + G P P P G P T
Sbjct: 378 PGRRGPPGEIGAK--GSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSP 435
Query: 388 QNFGPGCAGLSPRPEGPHGAGG 409
+ GP P PEGP G G
Sbjct: 436 GSDGPKGEKGDPGPEGPRGLAG 457
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 41.6 bits (96), Expect = 0.002
Identities = 80/305 (26%), Positives = 99/305 (32%), Gaps = 64/305 (20%)
Query: 227 DTGDESPGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQ---PEGAGLRSK 283
D D SPG P + G + F G A P G+ P+ + P AG R
Sbjct: 464 DGKDGSPGEPGANGLPGAAGERGAPGF---RGPAGPNGIPGEKGPAGERGAPGPAGPRGA 520
Query: 284 IWQLGPAGA-----LRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPR 338
+ G G +RG P P + PG P GE GP+ P +
Sbjct: 521 AGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPG-----PPGSQGESGRPGPPGPSG-PRGQ 574
Query: 339 PGILMLKTFGCRGFDAAVRKRKS------------PALSGQWQSPSPPPALAG------- 379
PG++ G +G D A K P +G+ P PP G
Sbjct: 575 PGVMGFP--GPKGNDGAPGKNGERGGPGGPGPQGPPGKNGE-TGPQGPPGPTGPGGDKGD 631
Query: 380 -APPTPQQRQNFGPGCAGL--------SPRPEGPHGAGGCPMGELGMSLRVWGTLLPLER 430
PP PQ Q PG G P P+G GA G P G+ P ER
Sbjct: 632 TGPPGPQGLQGL-PGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAG-------APGER 683
Query: 431 ARSLPSWNSRGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPA----PGQSRGSLAPRP 486
G G R G G G G G TP PG+ G +P P
Sbjct: 684 GPP----GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGP 739
Query: 487 TGSAG 491
G G
Sbjct: 740 KGDKG 744
Score = 40.4 bits (93), Expect = 0.004
Identities = 85/322 (26%), Positives = 103/322 (31%), Gaps = 53/322 (16%)
Query: 232 SPGSPQLCRVKGLGEVNSSDLFLEGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAG 291
SPG P G + G P+G P G GP G
Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKG 924
Query: 292 ALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRG 351
G+P K P A PGA P AG + GP P PR G +G
Sbjct: 925 DA-GQPGEKGSPGAQGPPGA--PGPLGIAGITGARGLAGPPGMPGPRGSP------GPQG 975
Query: 352 FDAAVRKRKSPALSGQWQSPSPP--PALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGG 409
K + LSG+ P P P LAG P + N PG GL R P G G
Sbjct: 976 VKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGN--PGSDGLPGRDGSPGGKG- 1032
Query: 410 CPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGA-RRGGGSGRFLPGG--GWRGARTK 466
GE G S G GA G G P G G RG
Sbjct: 1033 -DRGENG----------------------SPGAPGAPGHPGPPGPVGPAGKSGDRGESGP 1069
Query: 467 LRVCCTPAPGQSRGSLAPR-PTGSAGRALAAARLFAPQRSAAQLPARCGCFGSARGMRAP 525
P P SRG+ P+ P G G +R AA + G G+ +P
Sbjct: 1070 AGPAGAPGPAGSRGAPGPQGPRGDKGE--------TGERGAAGIKGHRGFPGNPGAPGSP 1121
Query: 526 ----RRLLVGAEETAGARSKRG 543
++ +G+ AG R G
Sbjct: 1122 GPAGQQGAIGSPGPAGPRGPVG 1143
Score = 36.6 bits (83), Expect = 0.065
Identities = 67/220 (30%), Positives = 83/220 (37%), Gaps = 33/220 (15%)
Query: 288 GPAGALRGRPRRKRYPEAGRVPGARVQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTF 347
GP G RG P + P +PGA AG + + A+G QP P PG
Sbjct: 297 GPMGP-RGAPGERGRPG---LPGA--------AGARGNDGARGSDGQPGP-PG-----PP 338
Query: 348 GCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGA 407
G GF SP G+ P+ P GAP QR GP + P GP G
Sbjct: 339 GTAGFPG------SPGAKGE-VGPAGSPGSNGAPG---QRGEPGPQGHAGAQGPPGPPGI 388
Query: 408 GGCPMGELGMSLRVWGTLLPLERARSLPS-WNSRGFCGARRGGGS-GRFLPGG--GWRGA 463
G P G+ M L AR P + G G R G G G+ G G RG
Sbjct: 389 NGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE 448
Query: 464 RTKLRVCCTP-APGQSRGSLAPRPTGSAGRALAAARLFAP 502
R + + P A G+ +P G+ G AA AP
Sbjct: 449 RGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAP 488
Score = 35.8 bits (81), Expect = 0.11
Identities = 43/165 (26%), Positives = 55/165 (33%), Gaps = 43/165 (26%)
Query: 256 GEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGA-----LRGRPRRKRYPEAGRVPG 310
G+GE P G+ P GL GPAGA LRG A PG
Sbjct: 394 GKGEMGPAGI---------PGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPG 444
Query: 311 ARVQEPQRGA----GEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSG 366
R + + G G + + G +P G G A +R +P G
Sbjct: 445 PRGERGEAGIPGVPGAKGEDGKDGSPGEP------------GANGLPGAAGERGAPGFRG 492
Query: 367 QWQSPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCP 411
P+ P + G GP +P P GP GA G P
Sbjct: 493 ----PAGPNGIPGEK---------GPAGERGAPGPAGPRGAAGEP 524
Score = 35.8 bits (81), Expect = 0.11
Identities = 46/156 (29%), Positives = 57/156 (36%), Gaps = 26/156 (16%)
Query: 255 EGEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQ 314
+GEG AP GL P P G R + GPAG G P + P GA +
Sbjct: 779 KGEGGAP--GLPGIAGPRGSP---GERGETGPPGPAG-FPGAPGQNGEPGGKGERGAPGE 832
Query: 315 EPQRGA-GEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSP 373
+ + G G GPA P P+ G +G +R SP G +
Sbjct: 833 KGEGGPPGVAGPPGGSGPAGPPGPQ---------GVKG------ERGSPGGPGA----AG 873
Query: 374 PPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGG 409
P G P P N GP SP +GP G G
Sbjct: 874 FPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAG 909
>gi|239755454 PREDICTED: hypothetical protein [Homo sapiens]
Length = 305
Score = 41.2 bits (95), Expect = 0.003
Identities = 69/262 (26%), Positives = 99/262 (37%), Gaps = 41/262 (15%)
Query: 269 VVPSQQPEGAGLRSKIWQLGPAGAL-----RGRPRRKRYPEAGRVPGARVQEPQRGAGEQ 323
+ PS+ EG + AGAL G K ++ GA+ +E Q G+ E+
Sbjct: 1 MTPSRAQEGPPRVERAECGASAGALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEK 60
Query: 324 KDQSA---QGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKS---PALSGQWQSPSPPPAL 377
SA P + P PRP + G G A ++ P GQ P A
Sbjct: 61 LTTSAFLSAKPGSVPAPRP---LRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRAS 117
Query: 378 AGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCP--MGELGMSLRVWGTLLPLERARSLP 435
+P ++ + P G RP G+ P GE G+ R G PLER S+
Sbjct: 118 VASPG--EKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVA 175
Query: 436 SWNSRGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLA-PRPTGSAGRAL 494
S +G CG + GG WR P + RGS+A P G G
Sbjct: 176 SPGQKGECGV-------PWREGGVWR-------------PLERRGSVASPGEKGECGVPW 215
Query: 495 AAARLFAP--QRSAAQLPARCG 514
R++ P +R++ P + G
Sbjct: 216 REGRVWRPLERRASVASPGQKG 237
>gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo
sapiens]
Length = 389
Score = 41.2 bits (95), Expect = 0.003
Identities = 69/262 (26%), Positives = 99/262 (37%), Gaps = 41/262 (15%)
Query: 269 VVPSQQPEGAGLRSKIWQLGPAGAL-----RGRPRRKRYPEAGRVPGARVQEPQRGAGEQ 323
+ PS+ EG + AGAL G K ++ GA+ +E Q G+ E+
Sbjct: 1 MTPSRAQEGPPRVERAECGASAGALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEK 60
Query: 324 KDQSA---QGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKS---PALSGQWQSPSPPPAL 377
SA P + P PRP + G G A ++ P GQ P A
Sbjct: 61 LTTSAFLSAKPGSVPAPRP---LRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRAS 117
Query: 378 AGAPPTPQQRQNFGPGCAGLSPRPEGPHGAGGCP--MGELGMSLRVWGTLLPLERARSLP 435
+P ++ + P G RP G+ P GE G+ R G PLER S+
Sbjct: 118 VASPG--EKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVA 175
Query: 436 SWNSRGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLA-PRPTGSAGRAL 494
S +G CG + GG WR P + RGS+A P G G
Sbjct: 176 SPGQKGECGV-------PWREGGVWR-------------PLERRGSVASPGEKGECGVPW 215
Query: 495 AAARLFAP--QRSAAQLPARCG 514
R++ P +R++ P + G
Sbjct: 216 REGRVWRPLERRASVASPGQKG 237
Score = 30.0 bits (66), Expect = 6.1
Identities = 33/115 (28%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 383 TPQQRQNFG-PGCAGLSPRPEGPHGAGGCP--MGELGMSLRVWGTLLPLERARSLPSWNS 439
+P Q+ G P G RP G+ P GE G+ G PLER S+ S
Sbjct: 232 SPGQKGECGVPWREGPVWRPLERRGSVASPGEKGECGVPWTEGGVWRPLERRASVASPGE 291
Query: 440 RGFCGARRGGGSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLAPRPTGSAGRAL 494
+G CG + GG WR + V +PG+ P G R L
Sbjct: 292 KGECGV-------PWTEGGVWRPLERRASVA---SPGEKGECGVPWREGGVWRPL 336
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 40.8 bits (94), Expect = 0.003
Identities = 53/174 (30%), Positives = 65/174 (37%), Gaps = 15/174 (8%)
Query: 256 GEGEAPP-TGLTTAVVPSQQPEGAGLRSKIWQLGPAG--ALRGRPRRKRYPEAGRVPGAR 312
G+G P TG A + P +G+ GPAG LRG PR + P GR
Sbjct: 778 GDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRG-PRGDQGP-VGRTGEVG 835
Query: 313 VQEPQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPS 372
P AGE+ G A P +L G G + +R P ++G P
Sbjct: 836 AVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPG 895
Query: 373 P-----PPALAGAP-PTPQQRQNFGPGCAGLSPRP--EGPHGAGGCP--MGELG 416
P PP G P N PG AG P +GP G G P GE G
Sbjct: 896 PLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERG 949
Score = 33.9 bits (76), Expect = 0.42
Identities = 49/176 (27%), Positives = 62/176 (35%), Gaps = 22/176 (12%)
Query: 257 EGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAG--ALRGRPRRKRYPEAGRVPGARVQ 314
+GE G PS + G + GP G LRG P + P A G
Sbjct: 360 KGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGP 419
Query: 315 EPQRGA-GEQKDQSAQGPAAQPHPRPGILMLKTF-GCRGFDAAVRKRKSPALSGQWQSPS 372
RGA G + G A +P PG++ + G G K L G P
Sbjct: 420 PGSRGASGPAGVRGPNGDAGRPG-EPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPG 478
Query: 373 P--PPALAGAP----------PTPQQRQNFGPGCAGLS-----PRPEGPHGAGGCP 411
P P G P PT +N G AGL+ P P+G +GA G P
Sbjct: 479 PIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPP 534
Score = 32.7 bits (73), Expect = 0.93
Identities = 55/214 (25%), Positives = 73/214 (34%), Gaps = 35/214 (16%)
Query: 256 GEGEAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQE 315
G+GE GL + + G + GPAGA R EAG A
Sbjct: 653 GKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRG------EAGAAGPAGPAG 706
Query: 316 PQRGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGF-----DAAVRKRKSPALSGQWQS 370
P+ GE+ + GP P G RG + V P +
Sbjct: 707 PRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAG 766
Query: 371 PSPPPALAGA-----PPT----PQQRQNFGP-GCAGLS--PRPEGPHGAGGC--PMGELG 416
P+ PP AG+ PP P GP G +G+S P P GP G G P G+ G
Sbjct: 767 PNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQG 826
Query: 417 MSLRVWGTLLPLERARSLPSWNSRGFCGARRGGG 450
P+ R + + GF G + G
Sbjct: 827 ----------PVGRTGEVGAVGPPGFAGEKGPSG 850
Score = 30.0 bits (66), Expect = 6.1
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 362 PALSGQWQSPSPPPALAGAPPTPQQRQNF-----------GPGCAGLSPRPEGPHGAGGC 410
P G+ P+ PP G P P NF GPG GL P GP GA G
Sbjct: 50 PGRDGE-DGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMG-PRGPPGAAGA 107
Query: 411 P 411
P
Sbjct: 108 P 108
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 40.8 bits (94), Expect = 0.003
Identities = 79/293 (26%), Positives = 101/293 (34%), Gaps = 63/293 (21%)
Query: 259 EAPPTGLTTAVVPSQQPEGAGLRSKIWQLGPAGALRGRPRRKRYPEAGRVPGARVQEPQR 318
+ PP L P +Q G R K P P + P A P ARV+EP R
Sbjct: 171 QRPPVYLGNKPTPPRQEGSFGGRPK--SQPPLPQETAAPAPQPGPTA---PPARVREPGR 225
Query: 319 GAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALA 378
G ++ + AA+P P PG A R +S A A
Sbjct: 226 AEGASREPRLRSRAARPPPAPGP-----------GALSRASRSRA--------------A 260
Query: 379 GAPPTPQQRQNFGPGCAG--LSPRPEGPHGAGGCPMGELGMSLRVWGTLLPLERARSLPS 436
G P GPG G + P P G GG G LG + P RAR +
Sbjct: 261 GRP---------GPGFHGGEKAAAPRAPGGGGGRNPGALGRA-------APPSRARQ-DA 303
Query: 437 WNSRGFC--GARRG----GGSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLAPRPTGSA 490
W G G RRG GS + P G R + C + G +
Sbjct: 304 WGLSGCATVGLRRGDCDRAGSSQ-PPATSGNGERCRF---CRRRRRRGGGGEGEGTHATH 359
Query: 491 GRALAAARLFAPQRSAAQLPARCGCFGSARGMR---APRRLLVGAEETAGARS 540
G A R + AA L A G GS RG++ PRR+ + G R+
Sbjct: 360 GPASPPGRRHDEEVGAAVLRAGSG-EGSRRGLQLTPPPRRVHGALQRFGGGRN 411
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,307,238
Number of Sequences: 37866
Number of extensions: 1812671
Number of successful extensions: 11312
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 581
Number of HSP's that attempted gapping in prelim test: 9720
Number of HSP's gapped (non-prelim): 1970
length of query: 577
length of database: 18,247,518
effective HSP length: 108
effective length of query: 469
effective length of database: 14,157,990
effective search space: 6640097310
effective search space used: 6640097310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.