Guide to the Human Genome
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Name: LOC100128979 Sequence: fasta or formatted (266aa) NCBI GI: 169208667
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {266aa} PREDICTED: hypothetical protein
alt mRNA {266aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         34           3
 C cysteine            3.4          9           1
 D aspartate           2.3          6           1
 E glutamate           2.6          7           1
 F phenylalanine       1.5          4           1
 G glycine            16.2         43           2
 H histidine           1.5          4           2
 I isoleucine          0.8          2           1
 K lysine              0.8          2           1
 L leucine             8.6         23           2
 M methionine          0.8          2           1
 N asparagine          0.0          0           0
 P proline            13.2         35           3
 Q glutamine           2.6          7           1
 R arginine           15.8         42           4
 S serine              9.0         24           3
 T threonine           3.4          9           1
 V valine              3.0          8           1
 W tryptophan          1.9          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128979          1.000   PREDICTED: hypothetical protein 
LOC100128979          0.994   PREDICTED: hypothetical protein 
LOC645321             0.047   PREDICTED: hypothetical protein 
LOC645321             0.047   PREDICTED: hypothetical protein 
COL2A1                0.041   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.041   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.039   alpha 1 type I collagen preproprotein 
LOC100291634          0.039   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.039   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.039   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.039   PREDICTED: hypothetical protein 
LOC100293005          0.037   PREDICTED: hypothetical protein 
ANKRD33B              0.037   PREDICTED: ankyrin repeat domain 33B 
KHSRP                 0.036   KH-type splicing regulatory protein 
LOC729956             0.034   hypothetical protein LOC729956 
LOC100290812          0.032   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.032   PREDICTED: hypothetical protein XP_002343496 
LBXCOR1               0.032   LBXCOR1 homolog 
LOC100293975          0.030   PREDICTED: hypothetical protein 
LOC100292721          0.030   PREDICTED: hypothetical protein 
C1QL4                 0.030   complement component 1, q subcomponent-like 4 
SOLH                  0.030   small optic lobes 
LOC643355             0.030   PREDICTED: hypothetical protein 
LOC100133305          0.030   PREDICTED: hypothetical protein 
LOC100133305          0.030   PREDICTED: hypothetical protein 
MAGI2                 0.030   membrane associated guanylate kinase, WW and PDZ dom...
KCNC3                 0.028   Shaw-related voltage-gated potassium channel protein...
HOXD11                0.026   homeobox D11 
LOC284988             0.026   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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