Guide to the Human Genome
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Name: LOC100289202 Sequence: fasta or formatted (232aa) NCBI GI: 239744649
Description:

PREDICTED: hypothetical protein XP_002343213

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         32           2
 C cysteine            1.7          4           1
 D aspartate           3.4          8           2
 E glutamate           6.5         15           2
 F phenylalanine       1.3          3           1
 G glycine             6.5         15           2
 H histidine           6.0         14           1
 I isoleucine          1.3          3           1
 K lysine              1.3          3           1
 L leucine             7.8         18           2
 M methionine          1.3          3           1
 N asparagine          2.2          5           1
 P proline             8.2         19           2
 Q glutamine           2.2          5           2
 R arginine            7.8         18           3
 S serine             12.9         30           3
 T threonine           4.7         11           1
 V valine              8.2         19           2
 W tryptophan          2.6          6           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343213 
LOC100293005          0.984   PREDICTED: hypothetical protein 
LOC100289780          0.984   PREDICTED: hypothetical protein XP_002347375 
LOC100293070          0.020   PREDICTED: hypothetical protein 
LOC100130716          0.018   PREDICTED: similar to mucin 11 
LOC100130716          0.018   PREDICTED: similar to Mucin-12 
MIDN                  0.018   midnolin 
BMP1                  0.018   bone morphogenetic protein 1 isoform 3 precursor [Hom...
C16orf86              0.018   hypothetical protein LOC388284 
C9orf69               0.018   hypothetical protein LOC90120 
CHD9                  0.016   chromodomain helicase DNA binding protein 9 
NUP62                 0.016   nucleoporin 62kDa 
NUP62                 0.016   nucleoporin 62kDa 
NUP62                 0.016   nucleoporin 62kDa 
NUP62                 0.016   nucleoporin 62kDa 
SFRS16                0.016   splicing factor, arginine/serine-rich 16 
MUC12                 0.013   PREDICTED: mucin 12 
MST1R                 0.013   macrophage stimulating 1 receptor precursor 
MUC12                 0.013   PREDICTED: mucin 12 
MUC12                 0.013   PREDICTED: mucin 12, cell surface associated 
TAF6                  0.013   TBP-associated factor 6 isoform delta 
TAF6                  0.013   TBP-associated factor 6 isoform gamma 
TAF6                  0.013   TBP-associated factor 6 isoform alpha 
TAF6                  0.013   TBP-associated factor 6 isoform alpha 
MTSS1                 0.013   metastasis suppressor 1 
LOC399829             0.011   PREDICTED: FLJ43861 protein 
ZMYM3                 0.011   zinc finger protein 261 
ZMYM3                 0.011   zinc finger protein 261 
CDC42BPB              0.011   CDC42-binding protein kinase beta 
DMRTA2                0.011   DMRT-like family A2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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