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Search of human proteins with 239755627
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755627 PREDICTED: similar to cag [Homo sapiens]
(392 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755627 PREDICTED: similar to cag [Homo sapiens] 790 0.0
gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo ... 787 0.0
gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo ... 787 0.0
gi|117938293 jerky isoform a [Homo sapiens] 142 7e-34
gi|117938295 jerky isoform b [Homo sapiens] 142 7e-34
gi|23312392 tigger transposable element derived 2 [Homo sapiens] 124 1e-28
gi|22547224 jerky homolog-like [Homo sapiens] 117 1e-26
gi|22325392 tigger transposable element derived 7 [Homo sapiens] 88 2e-17
gi|22219477 tigger transposable element derived 4 [Homo sapiens] 71 1e-12
gi|13569924 hypothetical protein LOC81789 [Homo sapiens] 66 6e-11
gi|22209001 hypothetical protein LOC200765 [Homo sapiens] 62 7e-10
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 57 2e-08
gi|49619234 hypothetical protein LOC92806 [Homo sapiens] 53 5e-07
gi|23312394 tigger transposable element derived 3 [Homo sapiens] 50 4e-06
gi|21735415 centromere protein B [Homo sapiens] 49 8e-06
gi|47059046 dachsous 2 isoform 1 [Homo sapiens] 36 0.052
gi|239756639 PREDICTED: similar to hCG1802057 [Homo sapiens] 34 0.20
gi|239751125 PREDICTED: hypothetical protein XP_002347719 [Homo ... 34 0.20
gi|239745616 PREDICTED: hypothetical protein XP_002344143 [Homo ... 34 0.20
gi|9910266 kinesin family member 15 [Homo sapiens] 34 0.20
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 33 0.34
gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 32 1.3
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 32 1.3
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 32 1.3
gi|71061468 centromere protein E [Homo sapiens] 31 1.7
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 31 1.7
gi|17149828 NMDA receptor regulated 1 [Homo sapiens] 31 1.7
gi|51317366 myosin XVIIIB [Homo sapiens] 31 2.2
gi|9256616 protocadherin beta 4 precursor [Homo sapiens] 31 2.2
gi|153792461 radial spoke head 10 homolog B2 [Homo sapiens] 30 2.9
>gi|239755627 PREDICTED: similar to cag [Homo sapiens]
Length = 392
Score = 790 bits (2039), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK 60
MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK
Sbjct: 1 MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK 60
Query: 61 RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL 120
RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL
Sbjct: 61 RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL 120
Query: 121 MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG 180
MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG
Sbjct: 121 MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG 180
Query: 181 WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFSNDDEQDGNFEGFSMSSEKKIMSDL 240
WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFSNDDEQDGNFEGFSMSSEKKIMSDL
Sbjct: 181 WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFSNDDEQDGNFEGFSMSSEKKIMSDL 240
Query: 241 LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV 300
LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV
Sbjct: 241 LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV 300
Query: 301 NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF 360
NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF
Sbjct: 301 NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF 360
Query: 361 KKAIQRNASSSLQDPLLGPSTASDASSHLKIK 392
KKAIQRNASSSLQDPLLGPSTASDASSHLKIK
Sbjct: 361 KKAIQRNASSSLQDPLLGPSTASDASSHLKIK 392
>gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo
sapiens]
Length = 392
Score = 787 bits (2033), Expect = 0.0
Identities = 391/392 (99%), Positives = 391/392 (99%)
Query: 1 MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK 60
MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK
Sbjct: 1 MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK 60
Query: 61 RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL 120
RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL
Sbjct: 61 RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL 120
Query: 121 MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG 180
MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG
Sbjct: 121 MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG 180
Query: 181 WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFSNDDEQDGNFEGFSMSSEKKIMSDL 240
WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTG FSNDDEQDGNFEGFSMSSEKKIMSDL
Sbjct: 181 WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGKFSNDDEQDGNFEGFSMSSEKKIMSDL 240
Query: 241 LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV 300
LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV
Sbjct: 241 LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV 300
Query: 301 NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF 360
NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF
Sbjct: 301 NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF 360
Query: 361 KKAIQRNASSSLQDPLLGPSTASDASSHLKIK 392
KKAIQRNASSSLQDPLLGPSTASDASSHLKIK
Sbjct: 361 KKAIQRNASSSLQDPLLGPSTASDASSHLKIK 392
>gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo
sapiens]
Length = 392
Score = 787 bits (2033), Expect = 0.0
Identities = 391/392 (99%), Positives = 391/392 (99%)
Query: 1 MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK 60
MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK
Sbjct: 1 MRAGWTRQQQVSHNAPHGAKTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISDKKK 60
Query: 61 RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL 120
RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL
Sbjct: 61 RKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQIL 120
Query: 121 MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG 180
MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG
Sbjct: 121 MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTG 180
Query: 181 WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFSNDDEQDGNFEGFSMSSEKKIMSDL 240
WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTG FSNDDEQDGNFEGFSMSSEKKIMSDL
Sbjct: 181 WLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGKFSNDDEQDGNFEGFSMSSEKKIMSDL 240
Query: 241 LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV 300
LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV
Sbjct: 241 LTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDV 300
Query: 301 NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF 360
NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF
Sbjct: 301 NTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETF 360
Query: 361 KKAIQRNASSSLQDPLLGPSTASDASSHLKIK 392
KKAIQRNASSSLQDPLLGPSTASDASSHLKIK
Sbjct: 361 KKAIQRNASSSLQDPLLGPSTASDASSHLKIK 392
>gi|117938293 jerky isoform a [Homo sapiens]
Length = 568
Score = 142 bits (357), Expect = 7e-34
Identities = 66/157 (42%), Positives = 105/157 (66%)
Query: 59 KKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
+KRK + L++ +K+ + +L+ G S K L +EY VGM+T+YD++ K +LL+F+A SD
Sbjct: 13 EKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
Query: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYS 178
++ R+TLH K E LDRVL EW +RSE +P++G +++++AK ++ ++++ C +S
Sbjct: 73 KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFS 132
Query: 179 TGWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNF 215
GWL +FK RHGIK L K SA H+A E+F F
Sbjct: 133 GGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFF 169
>gi|117938295 jerky isoform b [Homo sapiens]
Length = 556
Score = 142 bits (357), Expect = 7e-34
Identities = 66/157 (42%), Positives = 105/157 (66%)
Query: 59 KKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
+KRK + L++ +K+ + +L+ G S K L +EY VGM+T+YD++ K +LL+F+A SD
Sbjct: 13 EKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
Query: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYS 178
++ R+TLH K E LDRVL EW +RSE +P++G +++++AK ++ ++++ C +S
Sbjct: 73 KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFS 132
Query: 179 TGWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNF 215
GWL +FK RHGIK L K SA H+A E+F F
Sbjct: 133 GGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFF 169
>gi|23312392 tigger transposable element derived 2 [Homo sapiens]
Length = 525
Score = 124 bits (312), Expect = 1e-28
Identities = 58/163 (35%), Positives = 101/163 (61%)
Query: 60 KRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQI 119
KRK + L+I K+ +++KL+ G+S K L+ YG+G +T+ D+KK K++++ + SD
Sbjct: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
Query: 120 LMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYST 179
+ RK++ + E+LDRV+ EW Q++++ +P++G + KQAK + + L +EG+ S+
Sbjct: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASS 123
Query: 180 GWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFSNDDEQD 222
GWL +FK+RHGI G K A +F G+F E++
Sbjct: 124 GWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKE 166
>gi|22547224 jerky homolog-like [Homo sapiens]
Length = 524
Score = 117 bits (294), Expect = 1e-26
Identities = 55/163 (33%), Positives = 98/163 (60%)
Query: 60 KRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQI 119
KRK + L+I K+ +++KL+ G S K L YG+G TT+ D++K K+K++ + + SD
Sbjct: 4 KRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTS 63
Query: 120 LMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYST 179
L+ RK++ + E+LDR + EW Q+R++ P++G + K+A+ + L ++G+ S
Sbjct: 64 LLAKRKSMKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYALGMDGDFNPSA 123
Query: 180 GWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFSNDDEQD 222
GWL +FK+RH I+ + + + A E F NF + E++
Sbjct: 124 GWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIERE 166
>gi|22325392 tigger transposable element derived 7 [Homo sapiens]
Length = 549
Score = 87.8 bits (216), Expect = 2e-17
Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 7/162 (4%)
Query: 59 KKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
K+ K+ L++ +K+K+L ++++G S+K + +E+G+ +T YD+KK K +L F + D
Sbjct: 3 KRGKYTTLNLEEKMKVLSRIEAGRSLKSVMDEFGISKSTFYDIKKNKKLILDFVLKQDMP 62
Query: 119 IL-MKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEY 177
++ + RK AK D+D + W +Q+RS +P+ G+ + A+ + + G ++
Sbjct: 63 LVGAEKRKRTTGAKYGDVDDAVYMWYQQKRSAGVPVRGVELQAAAERF---ARCFGRTDF 119
Query: 178 --STGWLQKFKKRHGIKFLKTCGNKA-SAGHEATEKFTGNFS 216
STGWL +F+ RH I K CG + S+ E E F S
Sbjct: 120 KASTGWLFRFRNRHAIGNRKGCGEQVLSSVSENVEPFRQKLS 161
>gi|22219477 tigger transposable element derived 4 [Homo sapiens]
Length = 512
Score = 71.2 bits (173), Expect = 1e-12
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 52 PVNISDKKKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKF 111
PV + KK LSI +K+ ++ ++SG + EYG+ ++ + K KDK+L+
Sbjct: 12 PVTVKKKKS-----LSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEA 66
Query: 112 YAESDEQILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQA-----KIYH 166
+ + RK L A DL+ L W R + ++P+NG ++ +A K+ H
Sbjct: 67 F---ESLRFDPKRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLGH 123
Query: 167 NELKIEGNCEYSTGWLQKFKKRHGIKF 193
N+ K S GWL +FK R+G+ F
Sbjct: 124 NDFKC------SNGWLDRFKSRYGLVF 144
>gi|13569924 hypothetical protein LOC81789 [Homo sapiens]
Length = 521
Score = 65.9 bits (159), Expect = 6e-11
Identities = 38/143 (26%), Positives = 75/143 (52%), Gaps = 4/143 (2%)
Query: 55 ISDKKKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAE 114
+++K +K S+ +K+K++ +DSG + +E+G+ +T+ K + K F +
Sbjct: 1 MANKGNKKRRQFSLEEKMKVVGAVDSGKRKGDVAKEFGITPSTLSTFLKDRTK---FEEK 57
Query: 115 SDEQILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGN 174
E + RK + A +D+D+ + W ++ ++++ + G +I K+A N L + N
Sbjct: 58 VREASVGPQRKRMRSALYDDIDKAVFAWFQEIHAKNILVTGSVIRKKALNLANMLGYD-N 116
Query: 175 CEYSTGWLQKFKKRHGIKFLKTC 197
+ S GWL +F+ RHGI C
Sbjct: 117 FQASVGWLNRFRDRHGIALKAVC 139
>gi|22209001 hypothetical protein LOC200765 [Homo sapiens]
Length = 591
Score = 62.4 bits (150), Expect = 7e-10
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 56 SDKKKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAES 115
S++K R L L+ QK+++++ + G+S + G+ T+ + K+K LK +
Sbjct: 7 SERKSRTSLTLN--QKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKFLKEVKSA 64
Query: 116 DEQILMKNRKTLHKAKN--EDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEG 173
N + + K + D+++VL WI + S ++PL+ LI +A N +K E
Sbjct: 65 TPM----NTRMIRKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTLFNSMKAER 120
Query: 174 NC-------EYSTGWLQKFKKRHGIKFLKTCGNKASAGHEATEKF 211
E S GW +FK+R +K G ASA EA +
Sbjct: 121 GVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASADVEAAASY 165
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 57.4 bits (137), Expect = 2e-08
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 67 SIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQILMKNRKT 126
SI K++ +E++ G + ++GV T+ K + KL F + ++ + RK
Sbjct: 8 SIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWLKDEPKLRWFLEQLGGEVGTQ-RKK 66
Query: 127 LHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNEL-KIEGNCEYSTGWLQKF 185
+ A E++DR + W R +PL+G LI QA+ + ++ E + S GW ++
Sbjct: 67 MRLANEEEIDRAVYAWFLALRQHGVPLSGPLIQAQAEAFARQIYGPECTFKASHGWFWRW 126
Query: 186 KKRHGI 191
+KRHGI
Sbjct: 127 QKRHGI 132
>gi|49619234 hypothetical protein LOC92806 [Homo sapiens]
Length = 187
Score = 52.8 bits (125), Expect = 5e-07
Identities = 37/159 (23%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 46 KRPKDTPVNISDKKKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQK 105
+RP D V S K++RK + L + K+++L + ++G + + + + ++T+ ++ K
Sbjct: 4 ERPTDATVIPSAKRERKAITLDL--KLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSK 61
Query: 106 DKLLKFYAESDEQI---LMKNRKTLHK-AKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQ 161
+K+ ++ QI L +R T H+ A E ++++L W+ + + L+ ++ ++
Sbjct: 62 EKI-----KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEK 116
Query: 162 AKI-----YHNELKIEGNCEYSTGWLQKFKKRHGIKFLK 195
A+ H E S GWL +FK+ H + K
Sbjct: 117 AEFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFK 155
>gi|23312394 tigger transposable element derived 3 [Homo sapiens]
Length = 471
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 60 KRKHLCLSIAQKVKLLEKLD-SGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
K+K LS+A+K+++LE LD S +S + + V I + K K+KLL +
Sbjct: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTAN 65
Query: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEY- 177
+ RK ++K +D L W R++ + G +++ +AK EL ++
Sbjct: 66 ---RERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAK----ELADIMGQDFV 118
Query: 178 -STGWLQKFKKRHGIKF 193
S GWL ++K+R+ + F
Sbjct: 119 PSIGWLVRWKRRNNVGF 135
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 48.9 bits (115), Expect = 8e-06
Identities = 28/128 (21%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 66 LSIAQKVKLLEKLDSGVSVK--HLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQILMKN 123
L+ +K +++++++ ++ + + + +T+ + K K +L +E +
Sbjct: 8 LTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILA--SERKYGVASTC 65
Query: 124 RKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTGWLQ 183
RKT + + L+ +L W +Q R+ +P+ G+++ ++A EL ++ + S GWL
Sbjct: 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMD-DFTASNGWLD 124
Query: 184 KFKKRHGI 191
+F++RHG+
Sbjct: 125 RFRRRHGV 132
>gi|47059046 dachsous 2 isoform 1 [Homo sapiens]
Length = 2916
Score = 36.2 bits (82), Expect = 0.052
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 163 KIYHNELKIEGNCEYSTGWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFS 216
K+ +E E E S GW +FK R + +LK ASA EA ++ N +
Sbjct: 268 KVERDEEAAEKKFEASRGWFMRFKGRRHLHYLKVQDEAASADGEAAARYVANLA 321
>gi|239756639 PREDICTED: similar to hCG1802057 [Homo sapiens]
Length = 86
Score = 34.3 bits (77), Expect = 0.20
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 66 LSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAES--DEQILMKN 123
+ + +KV++L+KL SG+S + E V +TI +KK++ ++ + E+ D +
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 124 RKTLHKAKNEDLDRVLKEWIRQ 145
+ K E +++ L WI +
Sbjct: 61 VRDEAMTKMEKMEKRLNLWIHE 82
>gi|239751125 PREDICTED: hypothetical protein XP_002347719 [Homo
sapiens]
Length = 86
Score = 34.3 bits (77), Expect = 0.20
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 66 LSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAES--DEQILMKN 123
+ + +KV++L+KL SG+S + E V +TI +KK++ ++ + E+ D +
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 124 RKTLHKAKNEDLDRVLKEWIRQ 145
+ K E +++ L WI +
Sbjct: 61 VRDEAMTKMEKMEKRLNLWIHE 82
>gi|239745616 PREDICTED: hypothetical protein XP_002344143 [Homo
sapiens]
Length = 86
Score = 34.3 bits (77), Expect = 0.20
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 66 LSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAES--DEQILMKN 123
+ + +KV++L+KL SG+S + E V +TI +KK++ ++ + E+ D +
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 124 RKTLHKAKNEDLDRVLKEWIRQ 145
+ K E +++ L WI +
Sbjct: 61 VRDEAMTKMEKMEKRLNLWIHE 82
>gi|9910266 kinesin family member 15 [Homo sapiens]
Length = 1388
Score = 34.3 bits (77), Expect = 0.20
Identities = 65/323 (20%), Positives = 137/323 (42%), Gaps = 51/323 (15%)
Query: 100 DLKKQKDKLLKFYAESDEQILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIM 159
+L+ + +KLL+ +++ Q N + + K + + L R L+ + ++ + LN ++ +
Sbjct: 848 NLRLENEKLLE--SKACLQDSYDNLQEIMKFEIDQLSRNLQNFKKENETLKSDLNNLMEL 905
Query: 160 KQAKIYHNE---LKIEGNCEYSTGWLQKF-------KKRHGIKFLKTCGN--KASAGHEA 207
+A+ N L+ E + E S+ + K K++ K + K A
Sbjct: 906 LEAEKERNNKLSLQFEEDKENSSKEILKVLEAVRQEKQKETAKCEQQMAKVQKLEESLLA 965
Query: 208 TEKFTGNFSNDDEQDGNFEGFSMSSEKKIMSDLLTYTKNIHPETVSKLE-----EEDIKD 262
TEK + S S+KK+++DL+ + + K E ++++KD
Sbjct: 966 TEKVISSLEK-----------SRDSDKKVVADLMNQIQELRTSVCEKTETIDTLKQELKD 1014
Query: 263 VFNSNNEAPVVHSLSNGEVTKM--------------VLNQDDHDDNDNEDDVNTAEKV-P 307
+ N A V S + K +L++D D ED + E++
Sbjct: 1015 INCKYNSALVDREESRVLIKKQEVDILDLKETLRLRILSEDIERDMLCEDLAHATEQLNM 1074
Query: 308 IDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETFK-KAIQR 366
+ + K GL++ ++ +T++E + + +++ + L QK + Q + FK + ++
Sbjct: 1075 LTEASKKHSGLLQSAQEE--LTKKEAL-IQELQHK-LNQKKEEVEQKKNEYNFKMRQLEH 1130
Query: 367 NASSSLQDPLLGPSTASDASSHL 389
S+ +DP P T +HL
Sbjct: 1131 VMDSAAEDP-QSPKTPPHFQTHL 1152
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 33.5 bits (75), Expect = 0.34
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 203 AGHEATEKFTGNFSNDDEQDGNFEGFSMSSEKKIMSDL-------LTYTKNIHPETVSKL 255
A ++ T+K +G+ SN D + + E + SSEK S TK + + L
Sbjct: 39 AMNQNTDKISGSGSNSDMMENSKEEGTSSSEKSKSSGSSRSKRKPSIVTKYVESDDEKPL 98
Query: 256 EEEDI-KDVFNSNNEAPV-VHSLSNGEV---TKMVLNQDDHD 292
++E + +D N N+E + + SL G V + VLN+D D
Sbjct: 99 DDETVNEDASNENSENDITMQSLPKGTVIVQPEPVLNEDKDD 140
>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 31.6 bits (70), Expect = 1.3
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 256 EEEDIKDV-FNSNNEAPVVHSLSNGEVTKMVLNQDDHDDN----DNEDDVNTAEKVPI 308
EEED+K + + AP S + K+ +++DD DD+ D+ DD EKVP+
Sbjct: 125 EEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVPV 182
>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 31.6 bits (70), Expect = 1.3
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 256 EEEDIKDV-FNSNNEAPVVHSLSNGEVTKMVLNQDDHDDN----DNEDDVNTAEKVPI 308
EEED+K + + AP S + K+ +++DD DD+ D+ DD EKVP+
Sbjct: 125 EEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVPV 182
>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 31.6 bits (70), Expect = 1.3
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 256 EEEDIKDV-FNSNNEAPVVHSLSNGEVTKMVLNQDDHDDN----DNEDDVNTAEKVPI 308
EEED+K + + AP S + K+ +++DD DD+ D+ DD EKVP+
Sbjct: 125 EEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVPV 182
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 31.2 bits (69), Expect = 1.7
Identities = 53/278 (19%), Positives = 111/278 (39%), Gaps = 56/278 (20%)
Query: 98 IYDLKKQKDKL---LKFYAESDEQI--LMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMP 152
I DLKKQ +++ + A +Q+ L++ + L K +NE ++ + +
Sbjct: 352 IMDLKKQLEEVSLETRAQAMEKDQLAQLLEEKDLLQKVQNEKIENLTR------------ 399
Query: 153 LNGMLIMKQAKIYHNELKIEGN--CEYSTGWLQKFKKRHGIKFLKTCGNKASAGHEATEK 210
ML+ + ELK + + G + K K + N + H K
Sbjct: 400 ---MLVTSSSLTLQQELKAKRKRRVTWCLGKINKMKNSNYADQFNIPTNITTKTH----K 452
Query: 211 FTGNFSNDDEQDGNFEGFSMSSEKKIMSDLLTYTKNIHPETVSKLEEEDIKDVFNSNNEA 270
+ N + ++ S+ SE + S+ L +T+S++E + N N
Sbjct: 453 LSINLLREIDE-------SVCSESDVFSNTL--------DTLSEIEWNPATKLLNQENIE 497
Query: 271 PVVHSLSNGEVTKMVLNQDDHDDNDNEDDVNTAEKVPIDDM------------VKMCDGL 318
++SL + +VL+ + E ++ EK +D+ +++ +
Sbjct: 498 SELNSL-RADYDNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEI 556
Query: 319 --IKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQM 354
+K L +HA + Q++ + K LLR+K ++++
Sbjct: 557 SNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKL 594
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 31.2 bits (69), Expect = 1.7
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 85 KHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQILMKNRKTLHKAKNED--LDRVLKEW 142
+H + G G DLK+QK + +FY + LM+ R+TL + + E+ L ++ K+
Sbjct: 293 RHQVQLLGRGFIAGIDLKQQKREQSRFYGD-----LMEKRRTLEEKEQEEARLRKLRKKE 347
Query: 143 IRQR 146
+QR
Sbjct: 348 AKQR 351
>gi|17149828 NMDA receptor regulated 1 [Homo sapiens]
Length = 866
Score = 31.2 bits (69), Expect = 1.7
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 235 KIMSDLLTYTKNIHPETVSKLEEEDIKDVFN----SNNEAPVVHSLSNGEVTKMVLNQDD 290
K+ + LT H + + ++++K + N + +A + N E K NQ
Sbjct: 567 KLHDNPLTDENKEHEADTANMSDKELKKLRNKQRRAQKKAQIEEEKKNAEKEKQQRNQKK 626
Query: 291 HDDNDNEDDVNTAEKV----------PIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIK 340
D+D+E+ E++ P+++ +K L K L ++ T +Y K
Sbjct: 627 KKDDDDEEIGGPKEELIPEKLAKVETPLEEAIKFLTPL-KNLVKNKIETHLFAFEIYFRK 685
Query: 341 ERLLRQKASLMRQMTL 356
E+ L S+ R +
Sbjct: 686 EKFLLMLQSVKRAFAI 701
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 30.8 bits (68), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 20 KTCVHYSLHFFAYSLLCGINILLKMSKRPKDTPVNISD 57
++ +H+ S L GI +LK S PK+ P ++SD
Sbjct: 2470 RSSIHFETEEANRSFLSGIKTILKKSPEPKEDPAHLSD 2507
>gi|9256616 protocadherin beta 4 precursor [Homo sapiens]
Length = 795
Score = 30.8 bits (68), Expect = 2.2
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 71 KVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQILMKNRKTLHKA 130
+ +LE+ +SG V HL ++ G+G I +L + ++L ++ D+Q L +R+T
Sbjct: 31 RYSVLEETESGSFVAHLAKDLGLG---IGELASRSARVL---SDDDKQRLQLDRQTGDLL 84
Query: 131 KNEDLDR 137
E LDR
Sbjct: 85 LREKLDR 91
>gi|153792461 radial spoke head 10 homolog B2 [Homo sapiens]
Length = 870
Score = 30.4 bits (67), Expect = 2.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 161 QAKIYHNELKIEGNCEYSTGWLQKFKKRHGIKFLKT 196
+ IY+N+ EG C Y W+Q KK GI+ K+
Sbjct: 191 KGSIYYNQ---EGTCWYEGDWVQNIKKGWGIRCYKS 223
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,134,977
Number of Sequences: 37866
Number of extensions: 607052
Number of successful extensions: 2122
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2056
Number of HSP's gapped (non-prelim): 97
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.