LOC440577 7172

Name: LOC440577	Sequence: fasta or formatted (186aa)		NCBI GI: 169161624
Description: PREDICTED: similar to nucleophosmin 1		Referenced in: Nucleus and Nucleolus
Other entries for this name: alt mRNA [186aa] PREDICTED: similar to nucleophosmin 1 alt mRNA [186aa] PREDICTED: similar to nucleophosmin 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 11 1 C cysteine 1.1 2 1 D aspartate 14.0 26 12 E glutamate 10.8 20 4 F phenylalanine 2.7 5 1 G glycine 7.0 13 3 H histidine 2.7 5 1 I isoleucine 3.2 6 1 K lysine 9.1 17 2 L leucine 8.1 15 2 M methionine 2.7 5 1 N asparagine 2.2 4 1 P proline 5.4 10 2 Q glutamine 2.7 5 1 R arginine 2.2 4 1 S serine 7.5 14 1 T threonine 3.2 6 1 V valine 8.6 16 2 W tryptophan 0.0 0 0 Y tyrosine 1.1 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to nucleophosmin 1 LOC440577 1.000 PREDICTED: similar to nucleophosmin 1 LOC440577 1.000 PREDICTED: similar to nucleophosmin 1 NPM1 0.943 nucleophosmin 1 isoform 3 NPM1 0.943 nucleophosmin 1 isoform 1 NPM1 0.934 nucleophosmin 1 isoform 2 NPM3 0.214 nucleophosmin/nucleoplasmin 3 NPM2 0.149 nucleoplasmin 2 NCL 0.089 nucleolin UBTF 0.066 upstream binding transcription factor, RNA polymera... UBTF 0.066 upstream binding transcription factor, RNA polymera... UBTF 0.066 upstream binding transcription factor, RNA polymerase... ATAD2 0.057 ATPase family, AAA domain containing 2 CASZ1 0.057 castor homolog 1, zinc finger isoform a EIF3CL 0.057 eukaryotic translation initiation factor 3, subunit... EIF3C 0.057 eukaryotic translation initiation factor 3, subunit ... EIF3C 0.057 eukaryotic translation initiation factor 3, subunit C... RNF34 0.049 ring finger protein 34 isoform 1 RNF34 0.049 ring finger protein 34 isoform 2 ASPN 0.049 asporin CENPB 0.046 centromere protein B HRC 0.046 histidine rich calcium binding protein precursor [Hom... C19orf2 0.043 RPB5-mediating protein isoform b C19orf2 0.043 RPB5-mediating protein isoform a ZBTB7C 0.043 zinc finger and BTB domain containing 7C LOC100288514 0.043 PREDICTED: hypothetical protein LOC100288514 0.043 PREDICTED: hypothetical protein XP_002343198 HIVEP2 0.043 human immunodeficiency virus type I enhancer bindin... MTERFD2 0.040 MTERF domain containing 2 HMGB1L1 0.040 high-mobility group box 1-like 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.