Guide to the Human Genome
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Name: LOC100293487 Sequence: fasta or formatted (392aa) NCBI GI: 239755627
Description:

PREDICTED: similar to cag

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         19           1
 C cysteine            1.5          6           1
 D aspartate           6.6         26           2
 E glutamate           7.4         29           3
 F phenylalanine       3.1         12           2
 G glycine             4.8         19           1
 H histidine           4.1         16           1
 I isoleucine          5.4         21           1
 K lysine             12.5         49           3
 L leucine             9.7         38           2
 M methionine          3.8         15           1
 N asparagine          5.6         22           2
 P proline             2.3          9           1
 Q glutamine           4.3         17           3
 R arginine            3.6         14           2
 S serine              7.7         30           3
 T threonine           5.1         20           2
 V valine              4.6         18           2
 W tryptophan          0.8          3           1
 Y tyrosine            2.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to cag 
LOC100291289          0.996   PREDICTED: hypothetical protein XP_002347296 
LOC100287896          0.996   PREDICTED: hypothetical protein XP_002343159 
JRK                   0.153   jerky isoform a 
JRK                   0.153   jerky isoform b 
TIGD2                 0.129   tigger transposable element derived 2 
JRKL                  0.120   jerky homolog-like 
TIGD7                 0.082   tigger transposable element derived 7 
TIGD4                 0.060   tigger transposable element derived 4 
TIGD6                 0.054   hypothetical protein LOC81789 
TIGD1                 0.048   hypothetical protein LOC200765 
TIGD5                 0.042   tigger transposable element derived 5 
MGC16385              0.037   hypothetical protein LOC92806 
TIGD3                 0.033   tigger transposable element derived 3 
CENPB                 0.031   centromere protein B 
DCHS2                 0.014   dachsous 2 isoform 1 
LOC100293326          0.012   PREDICTED: similar to hCG1802057 
LOC100291015          0.012   PREDICTED: hypothetical protein XP_002347719 
LOC100288326          0.012   PREDICTED: hypothetical protein XP_002344143 
KIF15                 0.012   kinesin family member 15 
ATRX                  0.010   transcriptional regulator ATRX isoform 1 
LOC440577             0.009   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.009   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.009   PREDICTED: similar to nucleophosmin 1 
CENPE                 0.008   centromere protein E 
DDX23                 0.008   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
NARG1                 0.008   NMDA receptor regulated 1 
MYO18B                0.008   myosin XVIIIB 
PCDHB4                0.008   protocadherin beta 4 precursor 
RSPH10B2              0.007   radial spoke head 10 homolog B2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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