TIGD2 15906

Name: TIGD2	Sequence: fasta or formatted (525aa)		NCBI GI: 23312392
Description: tigger transposable element derived 2		Referenced in: DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 31 2 C cysteine 1.7 9 2 D aspartate 5.5 29 2 E glutamate 7.2 38 2 F phenylalanine 3.6 19 3 G glycine 5.7 30 1 H histidine 1.3 7 1 I isoleucine 5.9 31 3 K lysine 10.5 55 2 L leucine 9.1 48 3 M methionine 2.1 11 1 N asparagine 4.8 25 2 P proline 3.4 18 2 Q glutamine 5.0 26 2 R arginine 5.0 26 2 S serine 8.2 43 2 T threonine 5.5 29 1 V valine 5.1 27 2 W tryptophan 1.9 10 1 Y tyrosine 2.5 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tigger transposable element derived 2 JRKL 0.630 jerky homolog-like JRK 0.258 jerky isoform a JRK 0.256 jerky isoform b TIGD7 0.205 tigger transposable element derived 7 TIGD1 0.189 hypothetical protein LOC200765 TIGD4 0.135 tigger transposable element derived 4 TIGD6 0.135 hypothetical protein LOC81789 TIGD5 0.131 tigger transposable element derived 5 CENPB 0.108 centromere protein B LOC100293487 0.096 PREDICTED: similar to cag LOC100291289 0.096 PREDICTED: hypothetical protein XP_002347296 LOC100287896 0.096 PREDICTED: hypothetical protein XP_002343159 TIGD3 0.074 tigger transposable element derived 3 MGC16385 0.036 hypothetical protein LOC92806 POGZ 0.018 pogo transposable element with ZNF domain isoform 1 ... POGZ 0.018 pogo transposable element with ZNF domain isoform 2 ... DCDC2 0.013 doublecortin domain containing 2 LOC100293326 0.012 PREDICTED: similar to hCG1802057 LOC100291015 0.012 PREDICTED: hypothetical protein XP_002347719 LOC100288326 0.012 PREDICTED: hypothetical protein XP_002344143 TCF12 0.009 transcription factor 12 isoform c TCF12 0.009 transcription factor 12 isoform b TCF12 0.009 transcription factor 12 isoform a TCF12 0.009 transcription factor 12 isoform a TCF12 0.009 transcription factor 12 isoform b C6orf103 0.007 hypothetical protein LOC79747 NKAPL 0.007 NFKB activating protein-like KRT17 0.007 keratin 17 CCDC34 0.007 coiled-coil domain containing 34 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.