TIGD3 15907

Name: TIGD3	Sequence: fasta or formatted (471aa)		NCBI GI: 23312394
Description: tigger transposable element derived 3		Referenced in: DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.8 46 2 C cysteine 2.5 12 2 D aspartate 4.0 19 1 E glutamate 8.5 40 3 F phenylalanine 4.0 19 2 G glycine 7.2 34 2 H histidine 2.1 10 1 I isoleucine 3.0 14 1 K lysine 5.7 27 3 L leucine 12.7 60 3 M methionine 1.3 6 1 N asparagine 1.3 6 2 P proline 7.4 35 4 Q glutamine 3.8 18 2 R arginine 6.8 32 2 S serine 7.9 37 2 T threonine 3.0 14 2 V valine 5.5 26 2 W tryptophan 1.9 9 1 Y tyrosine 1.5 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tigger transposable element derived 3 TIGD4 0.163 tigger transposable element derived 4 CENPB 0.129 centromere protein B TIGD6 0.111 hypothetical protein LOC81789 JRKL 0.087 jerky homolog-like TIGD2 0.082 tigger transposable element derived 2 JRK 0.061 jerky isoform a JRK 0.061 jerky isoform b TIGD5 0.054 tigger transposable element derived 5 TIGD7 0.051 tigger transposable element derived 7 TIGD1 0.051 hypothetical protein LOC200765 LOC100293487 0.027 PREDICTED: similar to cag LOC100291289 0.027 PREDICTED: hypothetical protein XP_002347296 LOC100287896 0.027 PREDICTED: hypothetical protein XP_002343159 HDAC5 0.011 histone deacetylase 5 isoform 3 HDAC5 0.011 histone deacetylase 5 isoform 1 SMCR7 0.008 Smith-Magenis syndrome chromosome region, candidate... ZFHX4 0.008 zinc finger homeodomain 4 SSH1 0.006 slingshot 1 isoform 1 SSH1 0.006 slingshot 1 isoform 3 SSH1 0.006 slingshot 1 isoform 2 GOLGA6D 0.005 golgi autoantigen, golgin subfamily a, 6D TSC2 0.005 tuberous sclerosis 2 isoform 1 GOLGA6C 0.005 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... SETD1A 0.005 SET domain containing 1A MYST3 0.005 MYST histone acetyltransferase (monocytic leukemia)... MYST3 0.005 MYST histone acetyltransferase (monocytic leukemia)... MYST3 0.005 MYST histone acetyltransferase (monocytic leukemia)... GOLGA6 0.005 golgi autoantigen, golgin subfamily a, 6 NFATC4 0.005 nuclear factor of activated T-cells, cytoplasmic, c... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.