Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PCDHB4 Sequence: fasta or formatted (795aa) NCBI GI: 9256616
Description:

protocadherin beta 4 precursor

Referenced in:

Cadherins and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         50           2
 C cysteine            0.9          7           1
 D aspartate           6.2         49           3
 E glutamate           6.4         51           2
 F phenylalanine       4.5         36           2
 G glycine             6.4         51           3
 H histidine           2.0         16           1
 I isoleucine          4.7         37           2
 K lysine              3.6         29           3
 L leucine            12.7        101           3
 M methionine          0.8          6           1
 N asparagine          4.4         35           2
 P proline             6.7         53           2
 Q glutamine           4.0         32           2
 R arginine            5.3         42           2
 S serine              8.4         67           2
 T threonine           5.3         42           1
 V valine              8.9         71           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin beta 4 precursor 
PCDHB5                0.774   protocadherin beta 5 precursor 
PCDHB6                0.766   protocadherin beta 6 precursor 
PCDHB3                0.762   protocadherin beta 3 precursor 
PCDHB15               0.762   protocadherin beta 15 precursor 
PCDHB14               0.756   protocadherin beta 14 precursor 
PCDHB2                0.744   protocadherin beta 2 precursor 
PCDHB12               0.743   protocadherin beta 12 precursor 
PCDHB16               0.741   protocadherin beta 16 precursor 
PCDHB7                0.738   protocadherin beta 7 precursor 
PCDHB11               0.736   protocadherin beta 11 precursor 
PCDHB8                0.733   protocadherin beta 8 precursor 
PCDHB9                0.726   protocadherin beta 9 precursor 
PCDHB13               0.724   protocadherin beta 13 precursor 
PCDHB10               0.723   protocadherin beta 10 precursor 
PCDHB1                0.490   protocadherin beta 1 precursor 
PCDHGA2               0.395   protocadherin gamma subfamily A, 2 isoform 1 precurs...
PCDHGA2               0.395   protocadherin gamma subfamily A, 2 isoform 2 precurs...
PCDHGA7               0.393   protocadherin gamma subfamily A, 7 isoform 1 precurs...
PCDHGA5               0.393   protocadherin gamma subfamily A, 5 isoform 2 precurs...
PCDHGA5               0.393   protocadherin gamma subfamily A, 5 isoform 1 precurs...
PCDHGA7               0.393   protocadherin gamma subfamily A, 7 isoform 2 precurs...
PCDHGA6               0.393   protocadherin gamma subfamily A, 6 isoform 1 precurs...
PCDHGA6               0.393   protocadherin gamma subfamily A, 6 isoform 2 precurs...
PCDHGA1               0.392   protocadherin gamma subfamily A, 1 isoform 1 precurs...
PCDHGA1               0.392   protocadherin gamma subfamily A, 1 isoform 2 precurs...
PCDHGA4               0.391   protocadherin gamma subfamily A, 4 isoform 2 precurs...
PCDHGA4               0.391   protocadherin gamma subfamily A, 4 isoform 1 precurs...
PCDHGA9               0.391   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA9               0.391   protocadherin gamma subfamily A, 9 isoform 2 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press