Guide to the Human Genome
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Name: NARG1 Sequence: fasta or formatted (866aa) NCBI GI: 17149828
Description:

NMDA receptor regulated 1

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         69           2
 C cysteine            2.5         22           1
 D aspartate           5.1         44           4
 E glutamate          10.6         92           3
 F phenylalanine       3.7         32           1
 G glycine             3.2         28           2
 H histidine           2.2         19           1
 I isoleucine          4.6         40           2
 K lysine             10.0         87           4
 L leucine            12.4        107           3
 M methionine          2.4         21           1
 N asparagine          4.8         42           1
 P proline             3.6         31           2
 Q glutamine           4.0         35           2
 R arginine            5.7         49           2
 S serine              3.9         34           2
 T threonine           4.3         37           2
 V valine              3.1         27           2
 W tryptophan          1.0          9           1
 Y tyrosine            4.7         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NMDA receptor regulated 1 
NARG1L                0.717   NMDA receptor regulated 1-like protein isoform 1 [Ho...
NARG1L                0.370   NMDA receptor regulated 1-like protein isoform 3 [H...
NARG1L                0.270   NMDA receptor regulated 1-like protein isoform 2 [Ho...
LOC100294364          0.013   PREDICTED: hypothetical protein 
LOC100294088          0.012   PREDICTED: hypothetical protein, partial 
USP8                  0.012   ubiquitin specific peptidase 8 
USP8                  0.012   ubiquitin specific peptidase 8 
USP8                  0.012   ubiquitin specific peptidase 8 
ANKRD11               0.011   ankyrin repeat domain 11 
BAT2D1                0.011   HBxAg transactivated protein 2 
RGAG4                 0.011   retrotransposon gag domain containing 4 
ZRSR2                 0.010   U2 small nuclear RNA auxiliary factor 1-like 2 
LOC100133599          0.010   PREDICTED: hypothetical protein 
MAP1B                 0.010   microtubule-associated protein 1B 
IFIT1L                0.010   interferon-induced protein with tetratricopeptide re...
WDR87                 0.010   NYD-SP11 protein 
BRD9                  0.010   bromodomain containing 9 isoform 1 
ANKRD18B              0.010   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.010   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.010   PREDICTED: ankyrin repeat domain 18B 
SART3                 0.010   squamous cell carcinoma antigen recognized by T cells...
CHAF1A                0.010   chromatin assembly factor 1, subunit A (p150) 
ANKHD1                0.010   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.010   ANKHD1-EIF4EBP3 protein 
RBM25                 0.009   RNA binding motif protein 25 
BAZ1B                 0.009   bromodomain adjacent to zinc finger domain, 1B [Homo...
LOC100133599          0.009   PREDICTED: hypothetical protein 
LOC645202             0.009   PREDICTED: hypothetical protein LOC645202 
MYO6                  0.009   myosin VI 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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