Guide to the Human Genome
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Name: TIGD5 Sequence: fasta or formatted (593aa) NCBI GI: 144922631
Description:

tigger transposable element derived 5

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         69           2
 C cysteine            1.7         10           1
 D aspartate           4.4         26           3
 E glutamate           7.4         44           3
 F phenylalanine       2.9         17           2
 G glycine            10.3         61           3
 H histidine           2.0         12           2
 I isoleucine          2.0         12           1
 K lysine              3.7         22           2
 L leucine            11.1         66           2
 M methionine          1.3          8           1
 N asparagine          0.7          4           1
 P proline            11.0         65           4
 Q glutamine           3.9         23           2
 R arginine            7.8         46           2
 S serine              6.1         36           2
 T threonine           2.2         13           1
 V valine              5.1         30           2
 W tryptophan          2.4         14           1
 Y tyrosine            2.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tigger transposable element derived 5 
JRK                   0.115   jerky isoform a 
TIGD2                 0.112   tigger transposable element derived 2 
JRK                   0.111   jerky isoform b 
JRKL                  0.111   jerky homolog-like 
TIGD7                 0.095   tigger transposable element derived 7 
TIGD6                 0.087   hypothetical protein LOC81789 
TIGD1                 0.081   hypothetical protein LOC200765 
CENPB                 0.074   centromere protein B 
TIGD4                 0.065   tigger transposable element derived 4 
TIGD3                 0.042   tigger transposable element derived 3 
LOC100293487          0.027   PREDICTED: similar to cag 
LOC100291289          0.027   PREDICTED: hypothetical protein XP_002347296 
LOC100287896          0.027   PREDICTED: hypothetical protein XP_002343159 
POGK                  0.017   pogo transposable element with KRAB domain 
TAF4                  0.014   TBP-associated factor 4 
VASP                  0.014   vasodilator-stimulated phosphoprotein 
LMTK3                 0.014   lemur tyrosine kinase 3 
COL5A2                0.013   alpha 2 type V collagen preproprotein 
PELP1                 0.013   proline, glutamic acid and leucine rich protein 1 [...
DGKK                  0.013   diacylglycerol kinase kappa 
ENAH                  0.012   enabled homolog isoform a 
ENAH                  0.012   enabled homolog isoform b 
WAS                   0.012   Wiskott-Aldrich syndrome protein 
FMN1                  0.012   formin 1 
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.012   PREDICTED: hypothetical protein LOC647024 
FMN2                  0.012   formin 2 
SF3B4                 0.012   splicing factor 3b, subunit 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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