CENPB 13686

Name: CENPB	Sequence: fasta or formatted (599aa)		NCBI GI: 21735415
Description: centromere protein B		Referenced in: Centromere Proteins DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.2 67 3 C cysteine 1.2 7 1 D aspartate 6.3 38 5 E glutamate 14.7 88 14 F phenylalanine 2.8 17 2 G glycine 9.8 59 3 H histidine 2.0 12 1 I isoleucine 2.5 15 2 K lysine 3.8 23 1 L leucine 8.5 51 3 M methionine 1.2 7 1 N asparagine 1.7 10 1 P proline 4.8 29 2 Q glutamine 4.2 25 2 R arginine 6.5 39 3 S serine 6.7 40 3 T threonine 4.2 25 2 V valine 5.2 31 2 W tryptophan 1.0 6 1 Y tyrosine 1.7 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 centromere protein B TIGD6 0.151 hypothetical protein LOC81789 TIGD4 0.136 tigger transposable element derived 4 TIGD3 0.102 tigger transposable element derived 3 TIGD2 0.095 tigger transposable element derived 2 JRKL 0.079 jerky homolog-like TIGD5 0.076 tigger transposable element derived 5 TIGD7 0.074 tigger transposable element derived 7 JRK 0.071 jerky isoform a JRK 0.071 jerky isoform b RPGR 0.067 retinitis pigmentosa GTPase regulator isoform C [Hom... TIGD1 0.060 hypothetical protein LOC200765 NCL 0.053 nucleolin SLC24A1 0.050 solute carrier family 24 (sodium/potassium/calcium ex... PELP1 0.049 proline, glutamic acid and leucine rich protein 1 [... NSBP1 0.046 nucleosomal binding protein 1 ANP32E 0.044 acidic (leucine-rich) nuclear phosphoprotein 32 fami... ANP32E 0.044 acidic (leucine-rich) nuclear phosphoprotein 32 fam... ANP32E 0.044 acidic (leucine-rich) nuclear phosphoprotein 32 fam... FAM9A 0.043 family with sequence similarity 9, member A MYT1 0.042 myelin transcription factor 1 ANP32B 0.042 acidic (leucine-rich) nuclear phosphoprotein 32 famil... UBTF 0.040 upstream binding transcription factor, RNA polymera... UBTF 0.040 upstream binding transcription factor, RNA polymera... UBTF 0.040 upstream binding transcription factor, RNA polymerase... PAF1 0.040 Paf1, RNA polymerase II associated factor, homolog [... CDC2L2 0.040 cell division cycle 2-like 2 isoform 4 CDC2L2 0.040 cell division cycle 2-like 2 isoform 1 CDC2L1 0.040 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.040 cell division cycle 2-like 1 (PITSLRE proteins) isof... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.